Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
16:30:57 (2730944): wrapper (7.7.26015): starting
16:30:57 (2730944): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 16:30:57] Arguments: --nthreads 12
[2025-10-13 16:30:57] Threads: 12
[2025-10-13 16:30:57] Checking for CVMFS
[2025-10-13 16:30:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 16:30:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 16:30:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 16:30:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 16:30:57] 2.12.7.0 2061225 3823 86896 151672 1 188 2530733 4194304 917 130560 0 10878453 99.997 134136 2357 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2025-10-13 16:30:57] CVMFS is ok
[2025-10-13 16:30:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:30:57] Checking for apptainer binary...
[2025-10-13 16:30:57] apptainer is not installed, using version from CVMFS
[2025-10-13 16:30:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:30:57] Trebeth
[2025-10-13 16:30:57] apptainer works
[2025-10-13 16:30:58] Set ATHENA_PROC_NUMBER=12
[2025-10-13 16:30:58] Set ATHENA_CORE_NUMBER=12
[2025-10-13 16:30:58] Starting ATLAS job with PandaID=6840537576
[2025-10-13 16:30:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:13:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:13:21]  protocol_id=None
[2025-10-13 17:13:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 17:13:21]  replicas=None
[2025-10-13 17:13:21]  scope=mc23_13p6TeV
[2025-10-13 17:13:21]  status=None
[2025-10-13 17:13:21]  status_code=0
[2025-10-13 17:13:21]  storage_token=
[2025-10-13 17:13:21]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6840537576/log.46676269._086723.job.log.tgz.1
[2025-10-13 17:13:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/55/log.46676269._086723.job.log.tgz.1
[2025-10-13 17:13:21]  workdir=None
[2025-10-13 17:13:21] ]
[2025-10-13 17:13:21] 2025-10-13 21:12:44,322 | INFO     | transferring file log.46676269._086723.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6840537576/log.46676269._086723.job.log.tgz.1 to /var/lib/boinc
[2025-10-13 17:13:21] 2025-10-13 21:12:44,322 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6840537576/log.46676269._086723.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.466762
[2025-10-13 17:13:21] 2025-10-13 21:12:44,335 | INFO     | adding to output.list: log.46676269._086723.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/55/log.46676269._086723.job.log.tg
[2025-10-13 17:13:21] 2025-10-13 21:12:44,336 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 17:13:21] 2025-10-13 21:12:44,336 | INFO     | summary of transferred files:
[2025-10-13 17:13:21] 2025-10-13 21:12:44,336 | INFO     |  -- lfn=log.46676269._086723.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 17:13:21] 2025-10-13 21:12:44,336 | INFO     | stage-out finished correctly
[2025-10-13 17:13:21] 2025-10-13 21:12:44,380 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 17:13:21] 2025-10-13 21:12:44,517 | INFO     | time since job start (2497s) is within the limit (172800.0s)
[2025-10-13 17:13:21] 2025-10-13 21:12:45,443 | INFO     | job 6840537576 has state=finished
[2025-10-13 17:13:21] 2025-10-13 21:12:45,443 | INFO     | preparing for final server update for job 6840537576 in state='finished'
[2025-10-13 17:13:21] 2025-10-13 21:12:45,444 | INFO     | this job has now completed (state=finished)
[2025-10-13 17:13:21] 2025-10-13 21:12:45,444 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 17:13:21] 2025-10-13 21:12:45,444 | INFO     | log transfer has been attempted: DONE
[2025-10-13 17:13:21] 2025-10-13 21:12:45,444 | INFO     | job 6840537576 has finished - writing final server update
[2025-10-13 17:13:21] 2025-10-13 21:12:45,445 | INFO     | total number of processed events: 400 (read)
[2025-10-13 17:13:21] 2025-10-13 21:12:45,447 | INFO     | executing command: lscpu
[2025-10-13 17:13:21] 2025-10-13 21:12:45,499 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 17:13:21] 2025-10-13 21:12:46,523 | INFO     | time since job start (2499s) is within the limit (172800.0s)
[2025-10-13 17:13:21] 2025-10-13 21:12:46,872 | WARNING  | process 2741856 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 17:13:21] 2025-10-13 21:12:46,872 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6840537576/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 17:13:21] 2025-10-13 21:12:46,990 | INFO     | number of running child processes to parent process 2741856: 1
[2025-10-13 17:13:21] 2025-10-13 21:12:46,990 | INFO     | maximum number of monitored processes: 6
[2025-10-13 17:13:21] 2025-10-13 21:12:48,529 | INFO     | time since job start (2501s) is within the limit (172800.0s)
[2025-10-13 17:13:21] 2025-10-13 21:12:48,887 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 17:13:21] 2025-10-13 21:12:48,917 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 1289.0070357142856
[2025-10-13 17:13:21] 2025-10-13 21:12:48,946 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6840537576/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 17:13:21] 2025-10-13 21:12:48,947 | INFO     | extracted standard info from prmon json
[2025-10-13 17:13:21] 2025-10-13 21:12:48,947 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 17:13:21] 2025-10-13 21:12:48,947 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 17:13:21] 2025-10-13 21:12:48,947 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 17:13:21] 2025-10-13 21:12:48,947 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 17:13:21] 2025-10-13 21:12:48,948 | INFO     | fitting pss+swap vs Time
[2025-10-13 17:13:21] 2025-10-13 21:12:48,948 | INFO     | sum of square deviations: 12176972.5
[2025-10-13 17:13:21] 2025-10-13 21:12:48,948 | INFO     | sum of deviations: 1915588215.5
[2025-10-13 17:13:21] 2025-10-13 21:12:48,948 | INFO     | mean x: 1760388801.5
[2025-10-13 17:13:21] 2025-10-13 21:12:48,948 | INFO     | mean y: 2878482.5588235296
[2025-10-13 17:13:21] 2025-10-13 21:12:48,948 | INFO     | -- intersect: -276928028838.7453
[2025-10-13 17:13:21] 2025-10-13 21:12:48,948 | INFO     | intersect: -276928028838.7453
[2025-10-13 17:13:21] 2025-10-13 21:12:48,948 | INFO     | chi2: 0.05700121270220511
[2025-10-13 17:13:21] 2025-10-13 21:12:48,948 | INFO     | -- intersect: -276928028838.7453
[2025-10-13 17:13:21] 2025-10-13 21:12:48,948 | INFO     | current memory leak: 157.31 B/s (using 34 data points, chi2=0.06)
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | could have reported an average CPU frequency of 1676 MHz (5 samples)
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | ..............................
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | . Timing measurements:
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | . get job = 0 s
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | . initial setup = 2 s
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | . payload setup = 4 s
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | . stage-in = 0 s
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | . payload execution = 2473 s
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | . stage-out = 0 s
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | . log creation = 0 s
[2025-10-13 17:13:21] 2025-10-13 21:12:48,949 | INFO     | ..............................
[2025-10-13 17:13:21] 2025-10-13 21:12:48,992 | INFO     | 
[2025-10-13 17:13:21] 2025-10-13 21:12:48,992 | INFO     | job summary report
[2025-10-13 17:13:21] 2025-10-13 21:12:48,993 | INFO     | --------------------------------------------------
[2025-10-13 17:13:21] 2025-10-13 21:12:48,993 | INFO     | PanDA job id: 6840537576
[2025-10-13 17:13:21] 2025-10-13 21:12:48,993 | INFO     | task id: 46676269
[2025-10-13 17:13:21] 2025-10-13 21:12:48,993 | INFO     | errors: (none)
[2025-10-13 17:13:21] 2025-10-13 21:12:48,993 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 17:13:21] 2025-10-13 21:12:48,993 | INFO     | pilot state: finished 
[2025-10-13 17:13:21] 2025-10-13 21:12:48,993 | INFO     | transexitcode: 0
[2025-10-13 17:13:21] 2025-10-13 21:12:48,993 | INFO     | exeerrorcode: 0
[2025-10-13 17:13:21] 2025-10-13 21:12:48,993 | INFO     | exeerrordiag: 
[2025-10-13 17:13:21] 2025-10-13 21:12:48,994 | INFO     | exitcode: 0
[2025-10-13 17:13:21] 2025-10-13 21:12:48,994 | INFO     | exitmsg: OK
[2025-10-13 17:13:21] 2025-10-13 21:12:48,994 | INFO     | cpuconsumptiontime: 24074 s
[2025-10-13 17:13:21] 2025-10-13 21:12:48,994 | INFO     | nevents: 400
[2025-10-13 17:13:21] 2025-10-13 21:12:48,994 | INFO     | neventsw: 0
[2025-10-13 17:13:21] 2025-10-13 21:12:48,994 | INFO     | pid: 2741856
[2025-10-13 17:13:21] 2025-10-13 21:12:48,994 | INFO     | pgrp: 2741856
[2025-10-13 17:13:21] 2025-10-13 21:12:48,994 | INFO     | corecount: 12
[2025-10-13 17:13:21] 2025-10-13 21:12:48,994 | INFO     | event service: False
[2025-10-13 17:13:21] 2025-10-13 21:12:48,995 | INFO     | sizes: {0: 2348864, 3: 2349126, 11: 2349154, 2481: 2374339, 2482: 2383406, 2487: 2383576}
[2025-10-13 17:13:21] 2025-10-13 21:12:48,995 | INFO     | --------------------------------------------------
[2025-10-13 17:13:21] 2025-10-13 21:12:48,995 | INFO     | 
[2025-10-13 17:13:21] 2025-10-13 21:12:48,995 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-10-13 17:13:21] 2025-10-13 21:12:49,014 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,014 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,014 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,015 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,015 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,015 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,015 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,015 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,015 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,015 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,015 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,015 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,016 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,016 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,016 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,016 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:13:21] 2025-10-13 21:12:49,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,016 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:13:21] 2025-10-13 21:12:49,016 | INFO     | job 6840537576 has completed (purged errors)
[2025-10-13 17:13:21] 2025-10-13 21:12:49,017 | INFO     | overall cleanup function is called
[2025-10-13 17:13:21] 2025-10-13 21:12:50,025 | INFO     | --- collectZombieJob: --- 10, [2741856]
[2025-10-13 17:13:21] 2025-10-13 21:12:50,025 | INFO     | zombie collector waiting for pid 2741856
[2025-10-13 17:13:21] 2025-10-13 21:12:50,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:13:21] 2025-10-13 21:12:50,025 | INFO     | collected zombie processes
[2025-10-13 17:13:21] 2025-10-13 21:12:50,025 | INFO     | will attempt to kill all subprocesses of pid=2741856
[2025-10-13 17:13:21] 2025-10-13 21:12:50,138 | INFO     | process IDs to be killed: [2741856] (in reverse order)
[2025-10-13 17:13:21] 2025-10-13 21:12:50,195 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:13:21] 2025-10-13 21:12:50,195 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:13:21] 2025-10-13 21:12:50,201 | INFO     | did not find any defunct processes belonging to 2741856
[2025-10-13 17:13:21] 2025-10-13 21:12:50,207 | INFO     | did not find any defunct processes belonging to 2741856
[2025-10-13 17:13:21] 2025-10-13 21:12:50,207 | INFO     | ready for new job
[2025-10-13 17:13:21] 2025-10-13 21:12:50,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:13:21] 2025-10-13 21:12:50,208 | INFO     | ***************************************
[2025-10-13 17:13:21] 2025-10-13 21:12:50,208 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:13:21] 2025-10-13 21:12:50,208 | INFO     | ***************************************
[2025-10-13 17:13:21] 2025-10-13 21:12:50,208 | INFO     | 
[2025-10-13 17:13:21] 2025-10-13 21:12:50,230 | INFO     | architecture information:
[2025-10-13 17:13:21] 2025-10-13 21:12:50,231 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:13:21] 2025-10-13 21:12:50,241 | INFO     | cat /etc/os-release:
[2025-10-13 17:13:21] NAME="CentOS Linux"
[2025-10-13 17:13:21] VERSION="7 (Core)"
[2025-10-13 17:13:21] ID="centos"
[2025-10-13 17:13:21] ID_LIKE="rhel fedora"
[2025-10-13 17:13:21] VERSION_ID="7"
[2025-10-13 17:13:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:13:21] ANSI_COLOR="0;31"
[2025-10-13 17:13:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:13:21] HOME_URL="https://www.centos.org/"
[2025-10-13 17:13:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:13:21] 
[2025-10-13 17:13:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:13:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:13:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:13:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:13:21] 
[2025-10-13 17:13:21] 2025-10-13 21:12:50,241 | INFO     | ***************************************
[2025-10-13 17:13:21] 2025-10-13 21:12:50,744 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-10-13 17:13:21] 2025-10-13 21:12:50,760 | INFO     | sufficient remaining disk space (408771624960 B)
[2025-10-13 17:13:21] 2025-10-13 21:12:50,760 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:13:21] 2025-10-13 21:12:50,760 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:13:21] 2025-10-13 21:12:50,760 | INFO     | update_server=False
[2025-10-13 17:13:21] 2025-10-13 21:12:50,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:13:21] 2025-10-13 21:12:50,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:13:21] 2025-10-13 21:12:50,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:13:21] 2025-10-13 21:12:50,761 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:13:21] 2025-10-13 21:12:50,762 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:13:21] 2025-10-13 21:12:50,762 | INFO     | aborting loop
[2025-10-13 17:13:21] 2025-10-13 21:12:51,397 | INFO     | all data control threads have been joined
[2025-10-13 17:13:21] 2025-10-13 21:12:51,635 | INFO     | all payload control threads have been joined
[2025-10-13 17:13:21] 2025-10-13 21:12:51,738 | INFO     | all job control threads have been joined
[2025-10-13 17:13:21] 2025-10-13 21:12:51,766 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:51,766 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:51,767 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:51,770 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:52,296 | INFO     | [job] validate thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:52,347 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:52,402 | INFO     | [data] control thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:52,446 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:52,542 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:52,641 | INFO     | [payload] control thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:52,744 | INFO     | [job] control thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:52,766 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:52,894 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:52,993 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:12:54,767 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:13:01,351 | INFO     | job.realtimelogging is not enabled
[2025-10-13 17:13:21] 2025-10-13 21:13:02,357 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:13:21] 2025-10-13 21:13:10,376 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:13:21] 2025-10-13 21:13:11,413 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140389331674944)>', '<ExcThread(monitor, started 140388908128000)>']
[2025-10-13 17:13:21] 2025-10-13 21:13:16,438 | INFO     | all workflow threads have been joined
[2025-10-13 17:13:21] 2025-10-13 21:13:16,439 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:13:21] 2025-10-13 21:13:16,439 | INFO     | traces error code: 0
[2025-10-13 17:13:21] 2025-10-13 21:13:16,439 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:13:21] 2025-10-13 21:13:21,763 | INFO     | PID=2734930 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:13:21] 2025-10-13 21:13:21,763 | INFO     | .. there are 2 such processes running
[2025-10-13 17:13:21] 2025-10-13 21:13:21,763 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:13:21] 2025-10-13 21:13:21,764 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:13:21] 2025-10-13 21:13:21,764 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:13:21] 2025-10-13 21:13:21,764 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:13:21] 2025-10-13 21:13:21,764 | INFO     | [monitor] control thread has ended
[2025-10-13 17:13:21] 2025-10-13 21:13:21,831 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:13:21] 2025-10-13 21:13:21,834 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:13:21] 2025-10-13 21:13:21,837 [wrapper] pilotpid: 2734930
[2025-10-13 17:13:21] 2025-10-13 21:13:21,840 [wrapper] Pilot exit status: 0
[2025-10-13 17:13:21] 2025-10-13 21:13:21,849 [wrapper] pandaids: 6840537576
[2025-10-13 17:13:21] 2025-10-13 21:13:21,884 [wrapper] cleanup supervisor_pilot 2756947 2734931
[2025-10-13 17:13:21] 2025-10-13 21:13:21,886 [wrapper] Test setup, not cleaning
[2025-10-13 17:13:21] 2025-10-13 21:13:21,888 [wrapper] apfmon messages muted
[2025-10-13 17:13:21] 2025-10-13 21:13:21,890 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:13:21] 2025-10-13 21:13:21,892 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:13:21]  *** Error codes and diagnostics ***
[2025-10-13 17:13:21]     "exeErrorCode": 0,
[2025-10-13 17:13:21]     "exeErrorDiag": "",
[2025-10-13 17:13:21]     "pilotErrorCode": 0,
[2025-10-13 17:13:21]     "pilotErrorDiag": "",
[2025-10-13 17:13:21]  *** Listing of results directory ***
[2025-10-13 17:13:21] total 406076
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:53 queuedata.json
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc    557409 Oct 12 14:53 pilot3.tar.gz
[2025-10-13 17:13:21] -rwx------ 1 boinc boinc     36292 Oct 12 14:53 runpilot2-wrapper.sh
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 16:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:13:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 16:30 run_atlas
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 16:30 job.xml
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc      7601 Oct 13 16:30 init_data.xml
[2025-10-13 17:13:21] -rw-r--r-- 2 boinc boinc 218263967 Oct 13 16:30 EVNT.46676267._004428.pool.root.1
[2025-10-13 17:13:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:30 start_atlas.sh
[2025-10-13 17:13:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 16:30 shared
[2025-10-13 17:13:21] -rw-r--r-- 2 boinc boinc    569680 Oct 13 16:30 input.tar.gz
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 16:30 boinc_lockfile
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc      2550 Oct 13 16:30 pandaJob.out
[2025-10-13 17:13:21] -rw------- 1 boinc boinc    972799 Oct 13 16:31 agis_schedconf.cvmfs.json
[2025-10-13 17:13:21] -rw------- 1 boinc boinc   1560580 Oct 13 16:31 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:13:21] drwx------ 5 boinc boinc      4096 Oct 13 16:31 pilot3
[2025-10-13 17:13:21] -rw------- 1 boinc boinc 192119833 Oct 13 17:12 HITS.46676269._086723.pool.root.1
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc       530 Oct 13 17:12 boinc_task_state.xml
[2025-10-13 17:13:21] -rw------- 1 boinc boinc        95 Oct 13 17:12 pilot_heartbeat.json
[2025-10-13 17:13:21] -rw------- 1 boinc boinc      1026 Oct 13 17:12 memory_monitor_summary.json
[2025-10-13 17:13:21] -rw------- 1 boinc boinc    365358 Oct 13 17:12 log.46676269._086723.job.log.tgz.1
[2025-10-13 17:13:21] -rw------- 1 boinc boinc      7781 Oct 13 17:12 heartbeat.json
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:13 wrapper_checkpoint.txt
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:13 boinc_mmap_file
[2025-10-13 17:13:21] -rw------- 1 boinc boinc       822 Oct 13 17:13 pilotlog.txt
[2025-10-13 17:13:21] -rw------- 1 boinc boinc    400290 Oct 13 17:13 log.46676269._086723.job.log.1
[2025-10-13 17:13:21] -rw------- 1 boinc boinc       357 Oct 13 17:13 output.list
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:13 runtime_log
[2025-10-13 17:13:21] -rw------- 1 boinc boinc    788480 Oct 13 17:13 result.tar.gz
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc      8772 Oct 13 17:13 runtime_log.err
[2025-10-13 17:13:21] -rw------- 1 boinc boinc       647 Oct 13 17:13 7bcKDmVNGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjAlNDmhrhvWn.diag
[2025-10-13 17:13:21] -rw-r--r-- 1 boinc boinc     21491 Oct 13 17:13 stderr.txt
[2025-10-13 17:13:21] HITS file was successfully produced:
[2025-10-13 17:13:21] -rw------- 1 boinc boinc 192119833 Oct 13 17:12 shared/HITS.pool.root.1
[2025-10-13 17:13:21]  *** Contents of shared directory: ***
[2025-10-13 17:13:21] total 402128
[2025-10-13 17:13:21] -rw-r--r-- 2 boinc boinc 218263967 Oct 13 16:30 ATLAS.root_0
[2025-10-13 17:13:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:30 start_atlas.sh
[2025-10-13 17:13:21] -rw-r--r-- 2 boinc boinc    569680 Oct 13 16:30 input.tar.gz
[2025-10-13 17:13:21] -rw------- 1 boinc boinc 192119833 Oct 13 17:12 HITS.pool.root.1
[2025-10-13 17:13:21] -rw------- 1 boinc boinc    788480 Oct 13 17:13 result.tar.gz
17:13:23 (2730944): run_atlas exited; CPU time 24099.721826
17:13:23 (2730944): called boinc_finish(0)

</stderr_txt>
]]>

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