Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:34:09 (11045): wrapper (7.7.26015): starting
03:34:09 (11045): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 03:34:09] Arguments: --nthreads 12
[2025-10-13 03:34:09] Threads: 12
[2025-10-13 03:34:09] Checking for CVMFS
[2025-10-13 03:34:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:34:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:34:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:34:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:34:09] 2.11.2.0 2945 224028 98004 151653 3 56 16601432 20275201 1 130560 2 110928546 99.984 13457296 12801 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 03:34:09] CVMFS is ok
[2025-10-13 03:34:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:34:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:34:09] Further information can be found at the LHC@home message board.
[2025-10-13 03:34:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:34:09] Checking for apptainer binary...
[2025-10-13 03:34:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:34:09] Running /usr/bin/apptainer --version
[2025-10-13 03:34:09] apptainer version 1.3.2-1.el7
[2025-10-13 03:34:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:34:11] c-205-2.aglt2.org
[2025-10-13 03:34:11] apptainer works
[2025-10-13 03:34:11] Set ATHENA_PROC_NUMBER=12
[2025-10-13 03:34:11] Set ATHENA_CORE_NUMBER=12
[2025-10-13 03:34:11] Starting ATLAS job with PandaID=6840970498
[2025-10-13 03:34:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:46:39]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:46:39]  scope=mc23_13p6TeV
[2025-10-13 04:46:39]  status=None
[2025-10-13 04:46:39]  status_code=0
[2025-10-13 04:46:39]  storage_token=
[2025-10-13 04:46:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840970498/log.46676269._092835.job.log.tgz.1
[2025-10-13 04:46:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/9b/log.46676269._092835.job.log.tgz.1
[2025-10-13 04:46:39]  workdir=None
[2025-10-13 04:46:39] ]
[2025-10-13 04:46:39] 2025-10-13 08:45:46,934 | INFO     | transferring file log.46676269._092835.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840970498/log.46676269._092835.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 04:46:39] 2025-10-13 08:45:46,935 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840970498/log.46676269._092835.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._092835.job
[2025-10-13 04:46:39] 2025-10-13 08:45:46,958 | INFO     | adding to output.list: log.46676269._092835.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/9b/log.46676269._092835.job.log.tg
[2025-10-13 04:46:39] 2025-10-13 08:45:46,959 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 04:46:39] 2025-10-13 08:45:46,959 | INFO     | summary of transferred files:
[2025-10-13 04:46:39] 2025-10-13 08:45:46,959 | INFO     |  -- lfn=log.46676269._092835.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 04:46:39] 2025-10-13 08:45:46,960 | INFO     | stage-out finished correctly
[2025-10-13 04:46:39] 2025-10-13 08:45:46,966 | INFO     | time since job start (4280s) is within the limit (172800.0s)
[2025-10-13 04:46:39] 2025-10-13 08:45:47,932 | INFO     | monitor loop #320: job 0:6840970498 is in state 'finished'
[2025-10-13 04:46:39] 2025-10-13 08:45:47,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:46:39] 2025-10-13 08:45:48,083 | INFO     | PID=14719 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 04:46:39] 2025-10-13 08:45:48,454 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 04:46:39] 2025-10-13 08:45:48,534 | INFO     | job 6840970498 has state=finished
[2025-10-13 04:46:39] 2025-10-13 08:45:48,534 | INFO     | preparing for final server update for job 6840970498 in state='finished'
[2025-10-13 04:46:39] 2025-10-13 08:45:48,535 | INFO     | this job has now completed (state=finished)
[2025-10-13 04:46:39] 2025-10-13 08:45:48,535 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 04:46:39] 2025-10-13 08:45:48,535 | INFO     | log transfer has been attempted: DONE
[2025-10-13 04:46:39] 2025-10-13 08:45:48,535 | INFO     | job 6840970498 has finished - writing final server update
[2025-10-13 04:46:39] 2025-10-13 08:45:48,536 | INFO     | total number of processed events: 400 (read)
[2025-10-13 04:46:39] 2025-10-13 08:45:48,536 | INFO     | executing command: lscpu
[2025-10-13 04:46:39] 2025-10-13 08:45:48,563 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 04:46:39] 2025-10-13 08:45:49,083 | INFO     | time since job start (4283s) is within the limit (172800.0s)
[2025-10-13 04:46:39] 2025-10-13 08:45:50,435 | INFO     | monitor loop #321: job 0:6840970498 is in state 'finished'
[2025-10-13 04:46:39] 2025-10-13 08:45:50,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:46:39] 2025-10-13 08:45:51,089 | INFO     | time since job start (4285s) is within the limit (172800.0s)
[2025-10-13 04:46:39] 2025-10-13 08:45:52,938 | INFO     | monitor loop #322: job 0:6840970498 is in state 'finished'
[2025-10-13 04:46:39] 2025-10-13 08:45:52,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:46:39] 2025-10-13 08:45:53,094 | INFO     | time since job start (4287s) is within the limit (172800.0s)
[2025-10-13 04:46:39] 2025-10-13 08:45:54,467 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 04:46:39] 2025-10-13 08:45:54,471 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-13 04:46:39] 2025-10-13 08:45:54,473 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840970498/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 04:46:39] 2025-10-13 08:45:54,474 | INFO     | extracted standard info from prmon json
[2025-10-13 04:46:39] 2025-10-13 08:45:54,474 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 04:46:39] 2025-10-13 08:45:54,474 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 04:46:39] 2025-10-13 08:45:54,475 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 04:46:39] 2025-10-13 08:45:54,475 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 04:46:39] 2025-10-13 08:45:54,477 | INFO     | fitting pss+swap vs Time
[2025-10-13 04:46:39] 2025-10-13 08:45:54,477 | INFO     | sum of square deviations: 77515872.0
[2025-10-13 04:46:39] 2025-10-13 08:45:54,477 | INFO     | sum of deviations: -7247021308.0
[2025-10-13 04:46:39] 2025-10-13 08:45:54,478 | INFO     | mean x: 1760343091.0
[2025-10-13 04:46:39] 2025-10-13 08:45:54,478 | INFO     | mean y: 2835000.238095238
[2025-10-13 04:46:39] 2025-10-13 08:45:54,478 | INFO     | -- intersect: 164578728436.19897
[2025-10-13 04:46:39] 2025-10-13 08:45:54,478 | INFO     | intersect: 164578728436.19897
[2025-10-13 04:46:39] 2025-10-13 08:45:54,478 | INFO     | chi2: 0.060209406941890954
[2025-10-13 04:46:39] 2025-10-13 08:45:54,479 | INFO     | -- intersect: 164578728436.19897
[2025-10-13 04:46:39] 2025-10-13 08:45:54,479 | INFO     | current memory leak: -93.49 B/s (using 63 data points, chi2=0.06)
[2025-10-13 04:46:39] 2025-10-13 08:45:54,479 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-10-13 04:46:39] 2025-10-13 08:45:54,479 | INFO     | ..............................
[2025-10-13 04:46:39] 2025-10-13 08:45:54,479 | INFO     | . Timing measurements:
[2025-10-13 04:46:39] 2025-10-13 08:45:54,480 | INFO     | . get job = 0 s
[2025-10-13 04:46:39] 2025-10-13 08:45:54,480 | INFO     | . initial setup = 2 s
[2025-10-13 04:46:39] 2025-10-13 08:45:54,480 | INFO     | . payload setup = 7 s
[2025-10-13 04:46:39] 2025-10-13 08:45:54,480 | INFO     | . stage-in = 0 s
[2025-10-13 04:46:39] 2025-10-13 08:45:54,480 | INFO     | . payload execution = 4253 s
[2025-10-13 04:46:39] 2025-10-13 08:45:54,480 | INFO     | . stage-out = 0 s
[2025-10-13 04:46:39] 2025-10-13 08:45:54,480 | INFO     | . log creation = 0 s
[2025-10-13 04:46:39] 2025-10-13 08:45:54,480 | INFO     | ..............................
[2025-10-13 04:46:39] 2025-10-13 08:45:54,594 | INFO     | 
[2025-10-13 04:46:39] 2025-10-13 08:45:54,595 | INFO     | job summary report
[2025-10-13 04:46:39] 2025-10-13 08:45:54,595 | INFO     | --------------------------------------------------
[2025-10-13 04:46:39] 2025-10-13 08:45:54,595 | INFO     | PanDA job id: 6840970498
[2025-10-13 04:46:39] 2025-10-13 08:45:54,595 | INFO     | task id: 46676269
[2025-10-13 04:46:39] 2025-10-13 08:45:54,595 | INFO     | errors: (none)
[2025-10-13 04:46:39] 2025-10-13 08:45:54,595 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 04:46:39] 2025-10-13 08:45:54,596 | INFO     | pilot state: finished 
[2025-10-13 04:46:39] 2025-10-13 08:45:54,596 | INFO     | transexitcode: 0
[2025-10-13 04:46:39] 2025-10-13 08:45:54,596 | INFO     | exeerrorcode: 0
[2025-10-13 04:46:39] 2025-10-13 08:45:54,596 | INFO     | exeerrordiag: 
[2025-10-13 04:46:39] 2025-10-13 08:45:54,596 | INFO     | exitcode: 0
[2025-10-13 04:46:39] 2025-10-13 08:45:54,596 | INFO     | exitmsg: OK
[2025-10-13 04:46:39] 2025-10-13 08:45:54,596 | INFO     | cpuconsumptiontime: 45751 s
[2025-10-13 04:46:39] 2025-10-13 08:45:54,597 | INFO     | nevents: 400
[2025-10-13 04:46:39] 2025-10-13 08:45:54,597 | INFO     | neventsw: 0
[2025-10-13 04:46:39] 2025-10-13 08:45:54,597 | INFO     | pid: 21085
[2025-10-13 04:46:39] 2025-10-13 08:45:54,597 | INFO     | pgrp: 21085
[2025-10-13 04:46:39] 2025-10-13 08:45:54,597 | INFO     | corecount: 12
[2025-10-13 04:46:39] 2025-10-13 08:45:54,597 | INFO     | event service: False
[2025-10-13 04:46:39] 2025-10-13 08:45:54,598 | INFO     | sizes: {0: 2348806, 5: 2349068, 11: 2349124, 4263: 2375144, 4264: 2384142, 4266: 2384198, 4272: 2384520}
[2025-10-13 04:46:39] 2025-10-13 08:45:54,598 | INFO     | --------------------------------------------------
[2025-10-13 04:46:39] 2025-10-13 08:45:54,598 | INFO     | 
[2025-10-13 04:46:39] 2025-10-13 08:45:54,598 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 04:46:39] 2025-10-13 08:45:54,622 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,623 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,623 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,623 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,623 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,623 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,623 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,623 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,624 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,625 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,625 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,625 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,625 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:46:39] 2025-10-13 08:45:54,625 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,625 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:46:39] 2025-10-13 08:45:54,626 | INFO     | job 6840970498 has completed (purged errors)
[2025-10-13 04:46:39] 2025-10-13 08:45:54,626 | INFO     | overall cleanup function is called
[2025-10-13 04:46:39] 2025-10-13 08:45:55,631 | INFO     | --- collectZombieJob: --- 10, [21085]
[2025-10-13 04:46:39] 2025-10-13 08:45:55,631 | INFO     | zombie collector waiting for pid 21085
[2025-10-13 04:46:39] 2025-10-13 08:45:55,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:46:39] 2025-10-13 08:45:55,631 | INFO     | collected zombie processes
[2025-10-13 04:46:39] 2025-10-13 08:45:55,631 | INFO     | will attempt to kill all subprocesses of pid=21085
[2025-10-13 04:46:39] 2025-10-13 08:45:55,725 | INFO     | process IDs to be killed: [21085] (in reverse order)
[2025-10-13 04:46:39] 2025-10-13 08:45:55,783 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:46:39] 2025-10-13 08:45:55,783 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:46:39] 2025-10-13 08:45:55,787 | INFO     | did not find any defunct processes belonging to 21085
[2025-10-13 04:46:39] 2025-10-13 08:45:55,790 | INFO     | did not find any defunct processes belonging to 21085
[2025-10-13 04:46:39] 2025-10-13 08:45:55,790 | INFO     | ready for new job
[2025-10-13 04:46:39] 2025-10-13 08:45:55,790 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:46:39] 2025-10-13 08:45:55,792 | INFO     | ***************************************
[2025-10-13 04:46:39] 2025-10-13 08:45:55,792 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:46:39] 2025-10-13 08:45:55,792 | INFO     | ***************************************
[2025-10-13 04:46:39] 2025-10-13 08:45:55,792 | INFO     | 
[2025-10-13 04:46:39] 2025-10-13 08:45:55,793 | INFO     | architecture information:
[2025-10-13 04:46:39] 2025-10-13 08:45:55,793 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:46:39] 2025-10-13 08:45:55,809 | INFO     | cat /etc/os-release:
[2025-10-13 04:46:39] NAME="CentOS Linux"
[2025-10-13 04:46:39] VERSION="7 (Core)"
[2025-10-13 04:46:39] ID="centos"
[2025-10-13 04:46:39] ID_LIKE="rhel fedora"
[2025-10-13 04:46:39] VERSION_ID="7"
[2025-10-13 04:46:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:46:39] ANSI_COLOR="0;31"
[2025-10-13 04:46:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:46:39] HOME_URL="https://www.centos.org/"
[2025-10-13 04:46:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:46:39] 
[2025-10-13 04:46:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:46:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:46:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:46:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:46:39] 
[2025-10-13 04:46:39] 2025-10-13 08:45:55,809 | INFO     | ***************************************
[2025-10-13 04:46:39] 2025-10-13 08:45:56,312 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 04:46:39] 2025-10-13 08:45:56,329 | INFO     | sufficient remaining disk space (29440868352 B)
[2025-10-13 04:46:39] 2025-10-13 08:45:56,329 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:46:39] 2025-10-13 08:45:56,330 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:46:39] 2025-10-13 08:45:56,330 | INFO     | update_server=False
[2025-10-13 04:46:39] 2025-10-13 08:45:56,330 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:46:39] 2025-10-13 08:45:56,330 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:46:39] 2025-10-13 08:45:56,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:46:39] 2025-10-13 08:45:56,446 | INFO     | aborting loop
[2025-10-13 04:46:39] 2025-10-13 08:45:56,478 | INFO     | all job control threads have been joined
[2025-10-13 04:46:39] 2025-10-13 08:45:56,671 | INFO     | all data control threads have been joined
[2025-10-13 04:46:39] 2025-10-13 08:45:57,180 | INFO     | all payload control threads have been joined
[2025-10-13 04:46:39] 2025-10-13 08:45:57,336 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:57,336 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:57,355 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:57,387 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:57,448 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:57,480 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:57,483 | INFO     | [job] control thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:57,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:46:39] 2025-10-13 08:45:57,676 | INFO     | [data] control thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:58,123 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:58,139 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:58,186 | INFO     | [payload] control thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:58,804 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:58,832 | INFO     | [job] validate thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:45:59,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:46:39] 2025-10-13 08:45:59,568 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:46:03,053 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:46:07,116 | INFO     | job.realtimelogging is not enabled
[2025-10-13 04:46:39] 2025-10-13 08:46:08,122 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:46:39] 2025-10-13 08:46:26,294 | INFO     | PID=14719 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 04:46:39] 2025-10-13 08:46:26,295 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:46:39] 2025-10-13 08:46:26,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:46:39] 2025-10-13 08:46:26,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:46:39] 2025-10-13 08:46:32,428 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:46:39] 2025-10-13 08:46:33,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140347079272256)>', '<ExcThread(monitor, started 140346486933248)>']
[2025-10-13 04:46:39] 2025-10-13 08:46:34,336 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:46:39] 2025-10-13 08:46:34,336 | INFO     | [monitor] control thread has ended
[2025-10-13 04:46:39] 2025-10-13 08:46:39,000 | INFO     | all workflow threads have been joined
[2025-10-13 04:46:39] 2025-10-13 08:46:39,000 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:46:39] 2025-10-13 08:46:39,001 | INFO     | traces error code: 0
[2025-10-13 04:46:39] 2025-10-13 08:46:39,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:46:39] 2025-10-13 08:46:39,088 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:46:39] 2025-10-13 08:46:39,092 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:46:39] 2025-10-13 08:46:39,096 [wrapper] pilotpid: 14719
[2025-10-13 04:46:39] 2025-10-13 08:46:39,100 [wrapper] Pilot exit status: 0
[2025-10-13 04:46:39] 2025-10-13 08:46:39,115 [wrapper] pandaids: 6840970498
[2025-10-13 04:46:39] 2025-10-13 08:46:39,161 [wrapper] cleanup supervisor_pilot  6972 14720
[2025-10-13 04:46:39] 2025-10-13 08:46:39,165 [wrapper] Test setup, not cleaning
[2025-10-13 04:46:39] 2025-10-13 08:46:39,169 [wrapper] apfmon messages muted
[2025-10-13 04:46:39] 2025-10-13 08:46:39,172 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:46:39] 2025-10-13 08:46:39,176 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:46:39]  *** Error codes and diagnostics ***
[2025-10-13 04:46:39]     "exeErrorCode": 0,
[2025-10-13 04:46:39]     "exeErrorDiag": "",
[2025-10-13 04:46:39]     "pilotErrorCode": 0,
[2025-10-13 04:46:39]     "pilotErrorDiag": "",
[2025-10-13 04:46:39]  *** Listing of results directory ***
[2025-10-13 04:46:39] total 405412
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:02 pilot3.tar.gz
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 20:06 queuedata.json
[2025-10-13 04:46:39] -rwx------ 1 boincer umatlas     36292 Oct 12 20:07 runpilot2-wrapper.sh
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas       100 Oct 13 03:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:46:39] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 03:34 run_atlas
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas       105 Oct 13 03:34 job.xml
[2025-10-13 04:46:39] -rw-r--r-- 2 boincer umatlas 220560602 Oct 13 03:34 EVNT.46676267._004682.pool.root.1
[2025-10-13 04:46:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 03:34 start_atlas.sh
[2025-10-13 04:46:39] drwxrwx--x 2 boincer umatlas      4096 Oct 13 03:34 shared
[2025-10-13 04:46:39] -rw-r--r-- 2 boincer umatlas    569679 Oct 13 03:34 input.tar.gz
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas         0 Oct 13 03:34 boinc_lockfile
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 03:34 pandaJob.out
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas    972849 Oct 13 03:34 agis_schedconf.cvmfs.json
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas   1560580 Oct 13 03:34 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:46:39] drwx------ 5 boincer umatlas      4096 Oct 13 03:34 pilot3
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas 188656301 Oct 13 04:45 HITS.46676269._092835.pool.root.1
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas       529 Oct 13 04:45 boinc_task_state.xml
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas      5951 Oct 13 04:45 init_data.xml
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas      1049 Oct 13 04:45 memory_monitor_summary.json
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas    386885 Oct 13 04:45 log.46676269._092835.job.log.tgz.1
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas      7850 Oct 13 04:45 heartbeat.json
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 04:46 boinc_mmap_file
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas        27 Oct 13 04:46 wrapper_checkpoint.txt
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas        95 Oct 13 04:46 pilot_heartbeat.json
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas      4818 Oct 13 04:46 pilotlog.txt
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas    625545 Oct 13 04:46 log.46676269._092835.job.log.1
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas       357 Oct 13 04:46 output.list
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas       620 Oct 13 04:46 runtime_log
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas   1034240 Oct 13 04:46 result.tar.gz
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas      8700 Oct 13 04:46 runtime_log.err
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas       658 Oct 13 04:46 jbWLDmeHLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5KVMDmY3m87m.diag
[2025-10-13 04:46:39] -rw-r--r-- 1 boincer umatlas     21991 Oct 13 04:46 stderr.txt
[2025-10-13 04:46:39] HITS file was successfully produced:
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas 188656301 Oct 13 04:45 shared/HITS.pool.root.1
[2025-10-13 04:46:39]  *** Contents of shared directory: ***
[2025-10-13 04:46:39] total 401220
[2025-10-13 04:46:39] -rw-r--r-- 2 boincer umatlas 220560602 Oct 13 03:34 ATLAS.root_0
[2025-10-13 04:46:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 03:34 start_atlas.sh
[2025-10-13 04:46:39] -rw-r--r-- 2 boincer umatlas    569679 Oct 13 03:34 input.tar.gz
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas 188656301 Oct 13 04:45 HITS.pool.root.1
[2025-10-13 04:46:39] -rw------- 1 boincer umatlas   1034240 Oct 13 04:46 result.tar.gz
04:46:41 (11045): run_atlas exited; CPU time 45717.457943
04:46:41 (11045): called boinc_finish(0)

</stderr_txt>
]]>

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