Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:15:56 (11977): wrapper (7.7.26015): starting
03:15:56 (11977): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 03:15:56] Arguments: --nthreads 8
[2025-10-13 03:15:56] Threads: 8
[2025-10-13 03:15:56] Checking for CVMFS
[2025-10-13 03:15:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:15:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:15:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:15:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:15:56] 2.11.2.0 11495 54028 128496 151653 2 16 17732425 18432001 1833 130560 0 49975058 99.976 2427635 27996 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 03:15:56] CVMFS is ok
[2025-10-13 03:15:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:15:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:15:56] Further information can be found at the LHC@home message board.
[2025-10-13 03:15:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:15:56] Checking for apptainer binary...
[2025-10-13 03:15:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:15:56] Running /usr/bin/apptainer --version
[2025-10-13 03:15:56] apptainer version 1.3.2-1.el7
[2025-10-13 03:15:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:15:57] c-206-31.aglt2.org
[2025-10-13 03:15:57] apptainer works
[2025-10-13 03:15:57] Set ATHENA_PROC_NUMBER=8
[2025-10-13 03:15:57] Set ATHENA_CORE_NUMBER=8
[2025-10-13 03:15:57] Starting ATLAS job with PandaID=6841177452
[2025-10-13 03:15:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:13:58 (9534): wrapper (7.7.26015): starting
04:13:58 (9534): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 04:13:58] Arguments: --nthreads 8
[2025-10-13 04:13:58] Threads: 8
[2025-10-13 04:13:58] This job has been restarted, cleaning up previous attempt
[2025-10-13 04:13:58] Checking for CVMFS
[2025-10-13 04:13:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:13:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:13:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:13:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:13:58] 2.11.2.0 11495 54086 127476 151653 0 188 17733375 18432001 1 130560 0 50118884 99.977 2427710 27995 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 04:13:58] CVMFS is ok
[2025-10-13 04:13:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:13:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:13:58] Further information can be found at the LHC@home message board.
[2025-10-13 04:13:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:13:58] Checking for apptainer binary...
[2025-10-13 04:13:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:13:58] Running /usr/bin/apptainer --version
[2025-10-13 04:13:59] apptainer version 1.3.2-1.el7
[2025-10-13 04:13:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:14:00] c-206-31.aglt2.org
[2025-10-13 04:14:00] apptainer works
[2025-10-13 04:14:00] Set ATHENA_PROC_NUMBER=8
[2025-10-13 04:14:00] Set ATHENA_CORE_NUMBER=8
[2025-10-13 04:14:00] Starting ATLAS job with PandaID=6841177452
[2025-10-13 04:14:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:17:35]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:17:35] 2025-10-13 11:16:35,626 | INFO     | mean y: 2487428.960893855
[2025-10-13 07:17:35] 2025-10-13 11:16:35,626 | INFO     | -- intersect: -23377929185.31965
[2025-10-13 07:17:35] 2025-10-13 11:16:35,626 | INFO     | intersect: -23377929185.31965
[2025-10-13 07:17:35] 2025-10-13 11:16:35,626 | INFO     | chi2: 1.5122876742246862
[2025-10-13 07:17:35] 2025-10-13 11:16:35,626 | INFO     | sum of square deviations: 1633472487.5
[2025-10-13 07:17:35] 2025-10-13 11:16:35,627 | INFO     | sum of deviations: 22901587765.0
[2025-10-13 07:17:35] 2025-10-13 11:16:35,627 | INFO     | mean x: 1760348554.5
[2025-10-13 07:17:35] 2025-10-13 11:16:35,628 | INFO     | mean y: 2486673.16091954
[2025-10-13 07:17:35] 2025-10-13 11:16:35,628 | INFO     | -- intersect: -24677927124.05808
[2025-10-13 07:17:35] 2025-10-13 11:16:35,628 | INFO     | intersect: -24677927124.05808
[2025-10-13 07:17:35] 2025-10-13 11:16:35,628 | INFO     | chi2: 1.5134296937664757
[2025-10-13 07:17:35] 2025-10-13 11:16:35,628 | INFO     | current chi2=1.5134296937664757 (change=-0.0755160252413604 %)
[2025-10-13 07:17:35] 2025-10-13 11:16:35,628 | INFO     | right removable region: 173
[2025-10-13 07:17:35] 2025-10-13 11:16:35,628 | INFO     | sum of square deviations: 1633472487.5
[2025-10-13 07:17:35] 2025-10-13 11:16:35,629 | INFO     | sum of deviations: -4534207408.999996
[2025-10-13 07:17:35] 2025-10-13 11:16:35,629 | INFO     | mean x: 1760348859.5
[2025-10-13 07:17:35] 2025-10-13 11:16:35,629 | INFO     | mean y: 2516716.724137931
[2025-10-13 07:17:35] 2025-10-13 11:16:35,630 | INFO     | -- intersect: 4888908683.683785
[2025-10-13 07:17:35] 2025-10-13 11:16:35,630 | INFO     | intersect: 4888908683.683785
[2025-10-13 07:17:35] 2025-10-13 11:16:35,630 | INFO     | chi2: 0.053519543732132725
[2025-10-13 07:17:35] 2025-10-13 11:16:35,630 | INFO     | current chi2=0.053519543732132725 (change=96.46102096550044 %)
[2025-10-13 07:17:35] 2025-10-13 11:16:35,630 | INFO     | sum of square deviations: 1496660620.0
[2025-10-13 07:17:35] 2025-10-13 11:16:35,631 | INFO     | sum of deviations: -8193261115.999996
[2025-10-13 07:17:35] 2025-10-13 11:16:35,631 | INFO     | mean x: 1760349012.0
[2025-10-13 07:17:35] 2025-10-13 11:16:35,631 | INFO     | mean y: 2520737.1242603553
[2025-10-13 07:17:35] 2025-10-13 11:16:35,631 | INFO     | -- intersect: 9639307405.97415
[2025-10-13 07:17:35] 2025-10-13 11:16:35,631 | INFO     | intersect: 9639307405.97415
[2025-10-13 07:17:35] 2025-10-13 11:16:35,632 | INFO     | chi2: 0.01872727408571891
[2025-10-13 07:17:35] 2025-10-13 11:16:35,632 | INFO     | current chi2=0.01872727408571891 (change=65.00853187491731 %)
[2025-10-13 07:17:35] 2025-10-13 11:16:35,632 | INFO     | sum of square deviations: 1367709365.0
[2025-10-13 07:17:35] 2025-10-13 11:16:35,633 | INFO     | sum of deviations: -8036280482.999999
[2025-10-13 07:17:35] 2025-10-13 11:16:35,633 | INFO     | mean x: 1760349164.5
[2025-10-13 07:17:35] 2025-10-13 11:16:35,633 | INFO     | mean y: 2520547.6585365855
[2025-10-13 07:17:35] 2025-10-13 11:16:35,633 | INFO     | -- intersect: 10345843475.725718
[2025-10-13 07:17:35] 2025-10-13 11:16:35,633 | INFO     | intersect: 10345843475.725718
[2025-10-13 07:17:35] 2025-10-13 11:16:35,633 | INFO     | chi2: 0.018282472019090133
[2025-10-13 07:17:35] 2025-10-13 11:16:35,634 | INFO     | current chi2=0.018282472019090133 (change=2.375156494174316 %)
[2025-10-13 07:17:35] 2025-10-13 11:16:35,634 | INFO     | left removable region: 30
[2025-10-13 07:17:35] 2025-10-13 11:16:35,634 | INFO     | sum of square deviations: 906703512.0
[2025-10-13 07:17:35] 2025-10-13 11:16:35,634 | INFO     | sum of deviations: -5080432763.0
[2025-10-13 07:17:35] 2025-10-13 11:16:35,635 | INFO     | mean x: 1760349439.0
[2025-10-13 07:17:35] 2025-10-13 11:16:35,635 | INFO     | mean y: 2516810.7762237764
[2025-10-13 07:17:35] 2025-10-13 11:16:35,635 | INFO     | -- intersect: 9866090565.439558
[2025-10-13 07:17:35] 2025-10-13 11:16:35,635 | INFO     | intersect: 9866090565.439558
[2025-10-13 07:17:35] 2025-10-13 11:16:35,635 | INFO     | chi2: 0.017381250689106034
[2025-10-13 07:17:35] 2025-10-13 11:16:35,635 | INFO     | -- intersect: 9866090565.439558
[2025-10-13 07:17:35] 2025-10-13 11:16:35,635 | INFO     | current memory leak: -5.60 B/s (using 143 data points, chi2=0.02)
[2025-10-13 07:17:35] 2025-10-13 11:16:35,636 | INFO     | could have reported an average CPU frequency of 2301 MHz (9 samples)
[2025-10-13 07:17:35] 2025-10-13 11:16:35,636 | INFO     | ..............................
[2025-10-13 07:17:35] 2025-10-13 11:16:35,636 | INFO     | . Timing measurements:
[2025-10-13 07:17:35] 2025-10-13 11:16:35,636 | INFO     | . get job = 0 s
[2025-10-13 07:17:35] 2025-10-13 11:16:35,636 | INFO     | . initial setup = 1 s
[2025-10-13 07:17:35] 2025-10-13 11:16:35,636 | INFO     | . payload setup = 6 s
[2025-10-13 07:17:35] 2025-10-13 11:16:35,636 | INFO     | . stage-in = 0 s
[2025-10-13 07:17:35] 2025-10-13 11:16:35,636 | INFO     | . payload execution = 10912 s
[2025-10-13 07:17:35] 2025-10-13 11:16:35,636 | INFO     | . stage-out = 1 s
[2025-10-13 07:17:35] 2025-10-13 11:16:35,637 | INFO     | . log creation = 0 s
[2025-10-13 07:17:35] 2025-10-13 11:16:35,637 | INFO     | ..............................
[2025-10-13 07:17:35] 2025-10-13 11:16:36,095 | INFO     | 
[2025-10-13 07:17:35] 2025-10-13 11:16:36,096 | INFO     | job summary report
[2025-10-13 07:17:35] 2025-10-13 11:16:36,096 | INFO     | --------------------------------------------------
[2025-10-13 07:17:35] 2025-10-13 11:16:36,096 | INFO     | PanDA job id: 6841177452
[2025-10-13 07:17:35] 2025-10-13 11:16:36,096 | INFO     | task id: 46676269
[2025-10-13 07:17:35] 2025-10-13 11:16:36,096 | INFO     | errors: (none)
[2025-10-13 07:17:35] 2025-10-13 11:16:36,097 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:17:35] 2025-10-13 11:16:36,097 | INFO     | pilot state: finished 
[2025-10-13 07:17:35] 2025-10-13 11:16:36,097 | INFO     | transexitcode: 0
[2025-10-13 07:17:35] 2025-10-13 11:16:36,097 | INFO     | exeerrorcode: 0
[2025-10-13 07:17:35] 2025-10-13 11:16:36,097 | INFO     | exeerrordiag: 
[2025-10-13 07:17:35] 2025-10-13 11:16:36,097 | INFO     | exitcode: 0
[2025-10-13 07:17:35] 2025-10-13 11:16:36,097 | INFO     | exitmsg: OK
[2025-10-13 07:17:35] 2025-10-13 11:16:36,097 | INFO     | cpuconsumptiontime: 82670 s
[2025-10-13 07:17:35] 2025-10-13 11:16:36,097 | INFO     | nevents: 400
[2025-10-13 07:17:35] 2025-10-13 11:16:36,097 | INFO     | neventsw: 0
[2025-10-13 07:17:35] 2025-10-13 11:16:36,098 | INFO     | pid: 7621
[2025-10-13 07:17:35] 2025-10-13 11:16:36,098 | INFO     | pgrp: 7621
[2025-10-13 07:17:35] 2025-10-13 11:16:36,098 | INFO     | corecount: 8
[2025-10-13 07:17:35] 2025-10-13 11:16:36,098 | INFO     | event service: False
[2025-10-13 07:17:35] 2025-10-13 11:16:36,098 | INFO     | sizes: {0: 2348635, 1: 2348834, 5: 2349096, 11: 2349152, 10922: 2378105, 10924: 2387103, 10925: 2387287, 10928: 2387545}
[2025-10-13 07:17:35] 2025-10-13 11:16:36,098 | INFO     | --------------------------------------------------
[2025-10-13 07:17:35] 2025-10-13 11:16:36,098 | INFO     | 
[2025-10-13 07:17:35] 2025-10-13 11:16:36,099 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 07:17:35] 2025-10-13 11:16:36,112 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,113 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,113 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,113 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,113 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,113 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,113 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,113 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,113 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,113 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,114 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,114 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,114 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,114 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,114 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,114 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,114 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:17:35] 2025-10-13 11:16:36,114 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,114 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:17:35] 2025-10-13 11:16:36,115 | INFO     | job 6841177452 has completed (purged errors)
[2025-10-13 07:17:35] 2025-10-13 11:16:36,115 | INFO     | overall cleanup function is called
[2025-10-13 07:17:35] 2025-10-13 11:16:36,290 | INFO     | PID=20725 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 07:17:35] 2025-10-13 11:16:36,290 | INFO     | .. there are 2 such processes running
[2025-10-13 07:17:35] 2025-10-13 11:16:36,561 | WARNING  | process 7621 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 07:17:35] 2025-10-13 11:16:36,665 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:17:35] 2025-10-13 11:16:36,774 | INFO     | number of running child processes to parent process 7621: 1
[2025-10-13 07:17:35] 2025-10-13 11:16:36,774 | INFO     | maximum number of monitored processes: 6
[2025-10-13 07:17:35] 2025-10-13 11:16:36,775 | INFO     | aborting job monitoring since job object (job id=6841177452) has expired
[2025-10-13 07:17:35] 2025-10-13 11:16:37,122 | INFO     | --- collectZombieJob: --- 10, [7621]
[2025-10-13 07:17:35] 2025-10-13 11:16:37,122 | INFO     | zombie collector waiting for pid 7621
[2025-10-13 07:17:35] 2025-10-13 11:16:37,123 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:17:35] 2025-10-13 11:16:37,123 | INFO     | collected zombie processes
[2025-10-13 07:17:35] 2025-10-13 11:16:37,123 | INFO     | will attempt to kill all subprocesses of pid=7621
[2025-10-13 07:17:35] 2025-10-13 11:16:37,238 | INFO     | process IDs to be killed: [7621] (in reverse order)
[2025-10-13 07:17:35] 2025-10-13 11:16:37,273 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:17:35] 2025-10-13 11:16:37,274 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:17:35] 2025-10-13 11:16:37,276 | INFO     | did not find any defunct processes belonging to 7621
[2025-10-13 07:17:35] 2025-10-13 11:16:37,278 | INFO     | did not find any defunct processes belonging to 7621
[2025-10-13 07:17:35] 2025-10-13 11:16:37,279 | INFO     | ready for new job
[2025-10-13 07:17:35] 2025-10-13 11:16:37,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:17:35] 2025-10-13 11:16:37,280 | INFO     | ***************************************
[2025-10-13 07:17:35] 2025-10-13 11:16:37,281 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:17:35] 2025-10-13 11:16:37,281 | INFO     | ***************************************
[2025-10-13 07:17:35] 2025-10-13 11:16:37,281 | INFO     | 
[2025-10-13 07:17:35] 2025-10-13 11:16:37,282 | INFO     | architecture information:
[2025-10-13 07:17:35] 2025-10-13 11:16:37,282 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:17:35] 2025-10-13 11:16:37,291 | INFO     | cat /etc/os-release:
[2025-10-13 07:17:35] NAME="CentOS Linux"
[2025-10-13 07:17:35] VERSION="7 (Core)"
[2025-10-13 07:17:35] ID="centos"
[2025-10-13 07:17:35] ID_LIKE="rhel fedora"
[2025-10-13 07:17:35] VERSION_ID="7"
[2025-10-13 07:17:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:17:35] ANSI_COLOR="0;31"
[2025-10-13 07:17:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:17:35] HOME_URL="https://www.centos.org/"
[2025-10-13 07:17:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:17:35] 
[2025-10-13 07:17:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:17:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:17:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:17:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:17:35] 
[2025-10-13 07:17:35] 2025-10-13 11:16:37,292 | INFO     | ***************************************
[2025-10-13 07:17:35] 2025-10-13 11:16:37,795 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 07:17:35] 2025-10-13 11:16:37,805 | INFO     | sufficient remaining disk space (28302114816 B)
[2025-10-13 07:17:35] 2025-10-13 11:16:37,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:17:35] 2025-10-13 11:16:37,806 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:17:35] 2025-10-13 11:16:37,806 | INFO     | update_server=False
[2025-10-13 07:17:35] 2025-10-13 11:16:37,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:17:35] 2025-10-13 11:16:37,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:17:35] 2025-10-13 11:16:37,807 | INFO     | aborting loop
[2025-10-13 07:17:35] 2025-10-13 11:16:37,905 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:17:35] 2025-10-13 11:16:38,225 | INFO     | all data control threads have been joined
[2025-10-13 07:17:35] 2025-10-13 11:16:38,335 | INFO     | all job control threads have been joined
[2025-10-13 07:17:35] 2025-10-13 11:16:38,483 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:17:35] 2025-10-13 11:16:38,811 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:38,812 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:39,035 | INFO     | all payload control threads have been joined
[2025-10-13 07:17:35] 2025-10-13 11:16:39,042 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:39,231 | INFO     | [data] control thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:39,340 | INFO     | [job] control thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:39,357 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:39,571 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:39,592 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:39,597 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:39,727 | INFO     | [job] validate thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:39,911 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:39,989 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:40,037 | INFO     | [payload] control thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:40,134 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:40,727 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:17:35] 2025-10-13 11:16:41,733 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:16:42,488 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:17:35] 2025-10-13 11:17:08,490 | INFO     | PID=20725 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 07:17:35] 2025-10-13 11:17:08,490 | INFO     | .. there are 2 such processes running
[2025-10-13 07:17:35] 2025-10-13 11:17:08,490 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:17:35] 2025-10-13 11:17:08,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:17:35] 2025-10-13 11:17:08,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:17:35] 2025-10-13 11:17:29,595 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:17:35] 2025-10-13 11:17:29,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140186741421888)>', '<ExcThread(monitor, started 140185635378944)>']
[2025-10-13 07:17:35] 2025-10-13 11:17:30,588 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:17:35] 2025-10-13 11:17:30,588 | INFO     | [monitor] control thread has ended
[2025-10-13 07:17:35] 2025-10-13 11:17:34,904 | INFO     | all workflow threads have been joined
[2025-10-13 07:17:35] 2025-10-13 11:17:34,904 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:17:35] 2025-10-13 11:17:34,904 | INFO     | traces error code: 0
[2025-10-13 07:17:35] 2025-10-13 11:17:34,904 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:17:35] 2025-10-13 11:17:34,991 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:17:35] 2025-10-13 11:17:34,993 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:17:35] 2025-10-13 11:17:34,995 [wrapper] pilotpid: 20725
[2025-10-13 07:17:35] 2025-10-13 11:17:34,998 [wrapper] Pilot exit status: 0
[2025-10-13 07:17:35] 2025-10-13 11:17:35,009 [wrapper] pandaids: 6841177452 6841177452
[2025-10-13 07:17:35] 2025-10-13 11:17:35,044 [wrapper] cleanup supervisor_pilot  7802 20726
[2025-10-13 07:17:35] 2025-10-13 11:17:35,047 [wrapper] Test setup, not cleaning
[2025-10-13 07:17:35] 2025-10-13 11:17:35,050 [wrapper] apfmon messages muted
[2025-10-13 07:17:35] 2025-10-13 11:17:35,052 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:17:35] 2025-10-13 11:17:35,075 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:17:35]  *** Error codes and diagnostics ***
[2025-10-13 07:17:35]     "exeErrorCode": 0,
[2025-10-13 07:17:35]     "exeErrorDiag": "",
[2025-10-13 07:17:35]     "pilotErrorCode": 0,
[2025-10-13 07:17:35]     "pilotErrorDiag": "",
[2025-10-13 07:17:35]  *** Listing of results directory ***
[2025-10-13 07:17:35] total 628488
[2025-10-13 07:17:35] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 22:18 queuedata.json
[2025-10-13 07:17:35] -rwx------ 1 boincer umatlas     36292 Oct 12 22:18 runpilot2-wrapper.sh
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas       100 Oct 13 03:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:17:35] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 03:15 run_atlas
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas       105 Oct 13 03:15 job.xml
[2025-10-13 07:17:35] -rw-r--r-- 3 boincer umatlas 220733680 Oct 13 03:15 EVNT.46676267._002330.pool.root.1
[2025-10-13 07:17:35] -rw-r--r-- 3 boincer umatlas 220733680 Oct 13 03:15 ATLAS.root_0
[2025-10-13 07:17:35] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 03:15 start_atlas.sh
[2025-10-13 07:17:35] drwxrwx--x 2 boincer umatlas      4096 Oct 13 03:15 shared
[2025-10-13 07:17:35] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 03:15 input.tar.gz
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas         0 Oct 13 03:15 boinc_lockfile
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 04:14 pandaJob.out
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas    972849 Oct 13 04:14 agis_schedconf.cvmfs.json
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas      5951 Oct 13 07:13 init_data.xml
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas 194311555 Oct 13 07:16 HITS.46676269._094842.pool.root.1
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas        96 Oct 13 07:16 pilot_heartbeat.json
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas      1050 Oct 13 07:16 memory_monitor_summary.json
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas       532 Oct 13 07:16 boinc_task_state.xml
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas   1560580 Oct 13 07:16 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas    413198 Oct 13 07:16 log.46676269._094842.job.log.tgz.1
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas      7855 Oct 13 07:16 heartbeat.json
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 07:17 boinc_mmap_file
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas        29 Oct 13 07:17 wrapper_checkpoint.txt
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas      4821 Oct 13 07:17 pilotlog.txt
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas   1529444 Oct 13 07:17 log.46676269._094842.job.log.1
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas       357 Oct 13 07:17 output.list
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas       620 Oct 13 07:17 runtime_log
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas   1966080 Oct 13 07:17 result.tar.gz
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas      8789 Oct 13 07:17 runtime_log.err
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas       787 Oct 13 07:17 N2GODmlJNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7UmNDmF2N1Uo.diag
[2025-10-13 07:17:35] -rw-r--r-- 1 boincer umatlas     23305 Oct 13 07:17 stderr.txt
[2025-10-13 07:17:35] HITS file was successfully produced:
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas 194311555 Oct 13 07:16 shared/HITS.pool.root.1
[2025-10-13 07:17:35]  *** Contents of shared directory: ***
[2025-10-13 07:17:35] total 407824
[2025-10-13 07:17:35] -rw-r--r-- 3 boincer umatlas 220733680 Oct 13 03:15 ATLAS.root_0
[2025-10-13 07:17:35] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 03:15 start_atlas.sh
[2025-10-13 07:17:35] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 03:15 input.tar.gz
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas 194311555 Oct 13 07:16 HITS.pool.root.1
[2025-10-13 07:17:35] -rw------- 1 boincer umatlas   1966080 Oct 13 07:17 result.tar.gz
07:17:36 (9534): run_atlas exited; CPU time 82814.669597
07:17:36 (9534): called boinc_finish(0)

</stderr_txt>
]]>

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