Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 12:08:55 (14676): vboxwrapper version 26210
2025-10-13 12:08:55 (14676): BOINC client version: 8.2.4
2025-10-13 12:08:55 (14676): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-13 12:08:56 (14676): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 12:08:56 (14676): Create VM. (boinc_938ab21134dba582, slot#1)
2025-10-13 12:08:57 (14676): Setting Memory Size for VM. (4300MB)
2025-10-13 12:08:57 (14676): Setting CPU Count for VM. (3)
2025-10-13 12:08:57 (14676): Setting Chipset Options for VM.
2025-10-13 12:08:57 (14676): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 12:08:58 (14676): Setting Boot Options for VM.
2025-10-13 12:08:58 (14676): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 12:08:58 (14676): Enabling VM Network Access.
2025-10-13 12:08:59 (14676): Disabling USB Support for VM.
2025-10-13 12:08:59 (14676): Disabling COM Port Support for VM.
2025-10-13 12:08:59 (14676): Disabling LPT Port Support for VM.
2025-10-13 12:08:59 (14676): Disabling Audio Support for VM.
2025-10-13 12:09:00 (14676): Disabling Clipboard Support for VM.
2025-10-13 12:09:00 (14676): Disabling Drag and Drop Support for VM.
2025-10-13 12:09:00 (14676): Adding storage controller(s) to VM.
2025-10-13 12:09:00 (14676): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 12:09:03 (14676): Adding VirtualBox Guest Additions to VM.
2025-10-13 12:09:03 (14676): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 12:09:04 (14676): forwarding host port 64294 to guest port 80
2025-10-13 12:09:04 (14676): Enabling remote desktop for VM.
2025-10-13 12:09:04 (14676): Required extension pack not installed, remote desktop not enabled.
2025-10-13 12:09:04 (14676): Enabling shared directory for VM.
2025-10-13 12:09:05 (14676): Starting VM using VBoxManage interface. (boinc_938ab21134dba582, slot#1)
2025-10-13 12:09:09 (14676): Successfully started VM. (PID = '20268')
2025-10-13 12:09:09 (14676): Reporting VM Process ID to BOINC.
2025-10-13 12:09:09 (14676): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-13 12:09:09 (14676): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 12:09:09 (14676): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 12:09:09 (14676): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 12:09:09 (14676): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 12:09:09 (14676): Detected: Web Application Enabled (http://localhost:64294)
2025-10-13 12:09:09 (14676): Preference change detected
2025-10-13 12:09:09 (14676): Setting CPU throttle for VM. (100%)
2025-10-13 12:09:10 (14676): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 12:09:11 (14676): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 12:09:11 (14676): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 12:09:14 (14676): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 12:09:14 (14676): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 12:09:14 (14676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 12:09:21 (14676): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 12:09:21 (14676): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 12:09:29 (14676): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 12:09:29 (14676): Guest Log: 00:00:00.000066 main     Log opened 2025-10-13T12:09:27.065275000Z
2025-10-13 12:09:29 (14676): Guest Log: 00:00:00.000175 main     OS Product: Linux
2025-10-13 12:09:29 (14676): Guest Log: 00:00:00.000209 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 12:09:29 (14676): Guest Log: 00:00:00.000235 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 12:09:29 (14676): Guest Log: 00:00:00.000259 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 12:09:29 (14676): Guest Log: 00:00:00.000259 main     Process ID: 1294
2025-10-13 12:09:29 (14676): Guest Log: 00:00:00.000260 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 12:09:29 (14676): Guest Log: 00:00:00.000734 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 12:09:29 (14676): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 12:09:29 (14676): Guest Log: [INFO] Mounting shared directory
2025-10-13 12:09:29 (14676): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 12:09:39 (14676): Guest Log: 00:00:10.002503 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 159 326 000ns (GuestNow=1 760 353 778 907 360 000 ns GuestLast=1 760 357 367 066 686 000 ns fSetTimeLastLoop=true )
2025-10-13 12:09:52 (14676): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 12:09:52 (14676): Guest Log: [INFO] Detected branch: prod
2025-10-13 12:09:54 (14676): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 12:09:54 (14676): Guest Log: Copying input files
2025-10-13 12:09:55 (14676): Guest Log: Copied input files into RunAtlas.
2025-10-13 12:09:55 (14676): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 12:09:55 (14676): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 12:09:55 (14676): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 12:09:55 (14676): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 12:10:08 (14676): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 12:10:09 (14676): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 12:10:09 (14676): Guest Log: 2.6.3.0 1573 0 32200 151659 4 1 3117639 4096000 0 65024 0 0 n/a 1 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 12:10:12 (14676): Guest Log: copied the webapp to /var/www
2025-10-13 12:10:12 (14676): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-13 12:10:12 (14676): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-13 12:10:14 (14676): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 12:10:14 (14676): Guest Log:  *** Starting ATLAS job. (PandaID=6841177454 taskID=46676269) ***
2025-10-13 13:49:12 (14676): Status Report: Elapsed Time: '6000.000000'
2025-10-13 13:49:12 (14676): Status Report: CPU Time: '16821.984375'
2025-10-13 14:41:45 (14676): Guest Log:  *** Job finished ***
2025-10-13 14:41:45 (14676): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:15,864 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:15,864 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:35,012 | INFO     | [monitor] cgroup control has ended
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:35,845 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139623264671552)>', '<ExcThread(monitor, started 139622424221440)>']
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:36,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:36,012 | INFO     | [monitor] control thread has ended
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:40,853 | INFO     | all workflow threads have been joined
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:40,853 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:40,853 | INFO     | traces error code: 0
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:40,853 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:40,962 [wrapper] ==== pilot stdout END ====
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:40,964 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:40,967 [wrapper] pilotpid: 5954
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:40,969 [wrapper] Pilot exit status: 0
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:41,051 [wrapper] pandaids: 6841177454
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:41,066 [wrapper] cleanup supervisor_pilot  9644 5955
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:41,069 [wrapper] Test setup, not cleaning
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:41,071 [wrapper] apfmon messages muted
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:41,073 [wrapper] ==== wrapper stdout END ====
2025-10-13 14:41:45 (14676): Guest Log: 2025-10-13 13:41:41,076 [wrapper] ==== wrapper stderr END ====
2025-10-13 14:41:45 (14676): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 14:41:45 (14676): Guest Log:     "exeErrorCode": 0,
2025-10-13 14:41:45 (14676): Guest Log:     "exeErrorDiag": "",
2025-10-13 14:41:45 (14676): Guest Log:     "pilotErrorCode": 0,
2025-10-13 14:41:45 (14676): Guest Log:     "pilotErrorDiag": "",
2025-10-13 14:41:45 (14676): Guest Log:  *** Listing of results directory ***
2025-10-13 14:41:45 (14676): Guest Log: total 195252
2025-10-13 14:41:45 (14676): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 13 02:00 pilot3.tar.gz
2025-10-13 14:41:45 (14676): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 13 02:18 queuedata.json
2025-10-13 14:41:45 (14676): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 13 02:18 runpilot2-wrapper.sh
2025-10-13 14:41:45 (14676): Guest Log: -rwxr-xr-x. 1 atlas atlas      8739 Oct 13 11:09 init_data.xml
2025-10-13 14:41:45 (14676): Guest Log: -rwxr-xr-x. 1 atlas atlas    569686 Oct 13 11:09 input.tar.gz
2025-10-13 14:41:45 (14676): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 11:09 start_atlas.sh
2025-10-13 14:41:45 (14676): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 11:09 EVNT.46676267._002373.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 14:41:45 (14676): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 13 11:10 pandaJob.out
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas    972497 Oct 13 11:11 agis_schedconf.cvmfs.json
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 11:11 agis_ddmendpoints.agis.ALL.json
2025-10-13 14:41:45 (14676): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 11:11 pilot3
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas 193014157 Oct 13 13:40 HITS.46676269._094844.pool.root.1
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 13:40 pilot_heartbeat.json
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas      1024 Oct 13 13:40 memory_monitor_summary.json
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas    307039 Oct 13 13:40 log.46676269._094844.job.log.tgz.1
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas      7751 Oct 13 13:40 heartbeat.json
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 13 13:41 pilotlog.txt
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas   1238829 Oct 13 13:41 log.46676269._094844.job.log.1
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 13:41 output.list
2025-10-13 14:41:45 (14676): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 13:41 runtime_log
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas   1566720 Oct 13 13:41 result.tar.gz
2025-10-13 14:41:45 (14676): Guest Log: -rw-r--r--. 1 atlas atlas      8671 Oct 13 13:41 runtime_log.err
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas       667 Oct 13 13:41 c8JODmlJNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9UmNDmNaOHun.diag
2025-10-13 14:41:45 (14676): Guest Log: Looking for outputfile HITS.46676269._094844.pool.root.1
2025-10-13 14:41:45 (14676): Guest Log: HITS file was successfully produced
2025-10-13 14:41:45 (14676): Guest Log: -rw-------. 1 atlas atlas 193014157 Oct 13 13:40 /home/atlas/RunAtlas/HITS.46676269._094844.pool.root.1
2025-10-13 14:41:46 (14676): Guest Log: Successfully finished the ATLAS job!
2025-10-13 14:41:46 (14676): Guest Log: Copying the results back to the shared directory!
2025-10-13 14:41:46 (14676): Guest Log:  *** Contents of shared directory: ***
2025-10-13 14:41:46 (14676): Guest Log: total 404472
2025-10-13 14:41:46 (14676): Guest Log: -rwxrwxrwx. 1 root root 218989742 Oct 13 11:08 ATLAS.root_0
2025-10-13 14:41:46 (14676): Guest Log: -rwxrwxrwx. 1 root root 193014157 Oct 13  2025 HITS.pool.root.1
2025-10-13 14:41:46 (14676): Guest Log: -rwxrwxrwx. 1 root root      8739 Oct 13 11:08 init_data.xml
2025-10-13 14:41:46 (14676): Guest Log: -rwxrwxrwx. 1 root root    569686 Oct 13 07:01 input.tar.gz
2025-10-13 14:41:46 (14676): Guest Log: -rwxrwxrwx. 1 root root   1566720 Oct 13  2025 result.tar.gz
2025-10-13 14:41:46 (14676): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 13 07:01 start_atlas.sh
2025-10-13 14:41:46 (14676): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 14:41:46 (14676): VM Completion File Detected.
2025-10-13 14:41:46 (14676): Powering off VM.
2025-10-13 14:41:47 (14676): Successfully stopped VM.
2025-10-13 14:41:47 (14676): Deregistering VM. (boinc_938ab21134dba582, slot#1)
2025-10-13 14:41:47 (14676): Removing network bandwidth throttle group from VM.
2025-10-13 14:41:47 (14676): Removing VM from VirtualBox.
2025-10-13 14:41:52 (14676): called boinc_finish(0)

</stderr_txt>
]]>

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