Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:51:55 (3719061): wrapper (7.7.26015): starting
18:51:55 (3719061): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 18:51:55] Arguments: --nthreads 3
[2025-10-13 18:51:55] Threads: 3
[2025-10-13 18:51:55] Checking for CVMFS
[2025-10-13 18:51:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 18:51:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 18:51:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 18:51:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 18:51:55] 2.9.2.0 1855376 6056 84868 151667 2 57 26071787 36864000 0 130560 0 4922153 99.991 205632 727 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 18:51:55] CVMFS is ok
[2025-10-13 18:51:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 18:51:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 18:51:55] Further information can be found at the LHC@home message board.
[2025-10-13 18:51:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 18:51:55] Checking for apptainer binary...
[2025-10-13 18:51:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 18:51:55] Running /usr/bin/apptainer --version
[2025-10-13 18:51:55] apptainer version 1.4.1-1.1
[2025-10-13 18:51:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 18:51:55] thA331b
[2025-10-13 18:51:55] apptainer works
[2025-10-13 18:51:55] Set ATHENA_PROC_NUMBER=3
[2025-10-13 18:51:55] Set ATHENA_CORE_NUMBER=3
[2025-10-13 18:51:55] Starting ATLAS job with PandaID=6841126005
[2025-10-13 18:51:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 20:14:30]  *** The last 200 lines of the pilot log: ***
[2025-10-13 20:14:30] 2025-10-13 18:13:59,372 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 20:14:30] 2025-10-13 18:13:59,372 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 20:14:30] 2025-10-13 18:13:59,372 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 20:14:30] 2025-10-13 18:13:59,372 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 20:14:30] 2025-10-13 18:13:59,372 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 20:14:30] 2025-10-13 18:13:59,372 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 20:14:30] 2025-10-13 18:13:59,372 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 20:14:30] 2025-10-13 18:13:59,372 | INFO     | job 6841126005 has completed (purged errors)
[2025-10-13 20:14:30] 2025-10-13 18:13:59,373 | INFO     | overall cleanup function is called
[2025-10-13 20:14:30] 2025-10-13 18:14:00,379 | INFO     | --- collectZombieJob: --- 10, [3729213]
[2025-10-13 20:14:30] 2025-10-13 18:14:00,379 | INFO     | zombie collector waiting for pid 3729213
[2025-10-13 20:14:30] 2025-10-13 18:14:00,379 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 20:14:30] 2025-10-13 18:14:00,379 | INFO     | collected zombie processes
[2025-10-13 20:14:30] 2025-10-13 18:14:00,380 | INFO     | will attempt to kill all subprocesses of pid=3729213
[2025-10-13 20:14:30] 2025-10-13 18:14:00,423 | INFO     | process IDs to be killed: [3729213] (in reverse order)
[2025-10-13 20:14:30] 2025-10-13 18:14:00,446 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 20:14:30] 2025-10-13 18:14:00,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 20:14:30] 2025-10-13 18:14:00,448 | INFO     | did not find any defunct processes belonging to 3729213
[2025-10-13 20:14:30] 2025-10-13 18:14:00,449 | INFO     | did not find any defunct processes belonging to 3729213
[2025-10-13 20:14:30] 2025-10-13 18:14:00,449 | INFO     | ready for new job
[2025-10-13 20:14:30] 2025-10-13 18:14:00,449 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 20:14:30] 2025-10-13 18:14:00,450 | INFO     | ***************************************
[2025-10-13 20:14:30] 2025-10-13 18:14:00,450 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 20:14:30] 2025-10-13 18:14:00,450 | INFO     | ***************************************
[2025-10-13 20:14:30] 2025-10-13 18:14:00,450 | INFO     | 
[2025-10-13 20:14:30] 2025-10-13 18:14:00,450 | INFO     | architecture information:
[2025-10-13 20:14:30] 2025-10-13 18:14:00,450 | INFO     | executing command: cat /etc/os-release
[2025-10-13 20:14:30] 2025-10-13 18:14:00,458 | INFO     | cat /etc/os-release:
[2025-10-13 20:14:30] NAME="CentOS Linux"
[2025-10-13 20:14:30] VERSION="7 (Core)"
[2025-10-13 20:14:30] ID="centos"
[2025-10-13 20:14:30] ID_LIKE="rhel fedora"
[2025-10-13 20:14:30] VERSION_ID="7"
[2025-10-13 20:14:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 20:14:30] ANSI_COLOR="0;31"
[2025-10-13 20:14:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 20:14:30] HOME_URL="https://www.centos.org/"
[2025-10-13 20:14:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 20:14:30] 
[2025-10-13 20:14:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 20:14:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 20:14:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 20:14:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 20:14:30] 
[2025-10-13 20:14:30] 2025-10-13 18:14:00,459 | INFO     | ***************************************
[2025-10-13 20:14:30] 2025-10-13 18:14:00,960 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 20:14:30] 2025-10-13 18:14:00,972 | INFO     | sufficient remaining disk space (234833838080 B)
[2025-10-13 20:14:30] 2025-10-13 18:14:00,973 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 20:14:30] 2025-10-13 18:14:00,973 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 20:14:30] 2025-10-13 18:14:00,973 | INFO     | update_server=False
[2025-10-13 20:14:30] 2025-10-13 18:14:00,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 20:14:30] 2025-10-13 18:14:00,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:14:30] 2025-10-13 18:14:00,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:14:30] 2025-10-13 18:14:00,973 | INFO     | aborting loop
[2025-10-13 20:14:30] 2025-10-13 18:14:01,352 | INFO     | all payload control threads have been joined
[2025-10-13 20:14:30] 2025-10-13 18:14:01,416 | INFO     | all job control threads have been joined
[2025-10-13 20:14:30] 2025-10-13 18:14:01,582 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 20:14:30] 2025-10-13 18:14:01,970 | INFO     | all data control threads have been joined
[2025-10-13 20:14:30] 2025-10-13 18:14:01,979 | INFO     | [job] retrieve thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:01,979 | INFO     | [job] queue monitor thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:01,979 | INFO     | [job] job monitor thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:02,021 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 20:14:30] 2025-10-13 18:14:02,257 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:02,358 | INFO     | [payload] control thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:02,422 | INFO     | [job] control thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:02,842 | INFO     | [data] copytool_in thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:02,976 | INFO     | [data] control thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:02,989 | INFO     | [payload] validate_post thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:03,352 | INFO     | [payload] failed_post thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:03,430 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:03,467 | INFO     | [job] validate thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:03,475 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:03,587 | INFO     | [data] copytool_out thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:06,028 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:06,940 | INFO     | [monitor] cgroup control has ended
[2025-10-13 20:14:30] 2025-10-13 18:14:11,507 | INFO     | job.realtimelogging is not enabled
[2025-10-13 20:14:30] 2025-10-13 18:14:12,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 20:14:30] 2025-10-13 18:14:13,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139751959594816)>', '<ExcThread(monitor, started 139751669593856)>']
[2025-10-13 20:14:30] 2025-10-13 18:14:18,211 | INFO     | all workflow threads have been joined
[2025-10-13 20:14:30] 2025-10-13 18:14:18,212 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 20:14:30] 2025-10-13 18:14:18,212 | INFO     | traces error code: 0
[2025-10-13 20:14:30] 2025-10-13 18:14:18,212 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 20:14:30] 2025-10-13 18:14:30,812 | INFO     | PID=3722774 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:14:30] 2025-10-13 18:14:30,813 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 20:14:30] 2025-10-13 18:14:30,813 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 20:14:30] 2025-10-13 18:14:30,813 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 20:14:30] 2025-10-13 18:14:30,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 20:14:30] 2025-10-13 18:14:30,813 | INFO     | [monitor] control thread has ended
[2025-10-13 20:14:30] 2025-10-13 18:14:30,860 [wrapper] ==== pilot stdout END ====
[2025-10-13 20:14:30] 2025-10-13 18:14:30,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 20:14:30] 2025-10-13 18:14:30,865 [wrapper] pilotpid: 3722774
[2025-10-13 20:14:30] 2025-10-13 18:14:30,867 [wrapper] Pilot exit status: 0
[2025-10-13 20:14:30] 2025-10-13 18:14:30,874 [wrapper] pandaids: 6841126005
[2025-10-13 20:14:30] 2025-10-13 18:14:30,889 [wrapper] cleanup supervisor_pilot 3741407 3722775
[2025-10-13 20:14:30] 2025-10-13 18:14:30,892 [wrapper] Test setup, not cleaning
[2025-10-13 20:14:30] 2025-10-13 18:14:30,894 [wrapper] apfmon messages muted
[2025-10-13 20:14:30] 2025-10-13 18:14:30,896 [wrapper] ==== wrapper stdout END ====
[2025-10-13 20:14:30] 2025-10-13 18:14:30,898 [wrapper] ==== wrapper stderr END ====
[2025-10-13 20:14:30]  *** Error codes and diagnostics ***
[2025-10-13 20:14:30]     "exeErrorCode": 0,
[2025-10-13 20:14:30]     "exeErrorDiag": "",
[2025-10-13 20:14:30]     "pilotErrorCode": 0,
[2025-10-13 20:14:30]     "pilotErrorDiag": "",
[2025-10-13 20:14:30]  *** Listing of results directory ***
[2025-10-13 20:14:30] total 423432
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc    563267 Oct  7 09:02 pilot3.tar.gz
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc      5112 Oct 13 04:18 queuedata.json
[2025-10-13 20:14:30] -rwx------ 1 boinc boinc     36292 Oct 13 04:18 runpilot2-wrapper.sh
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc       100 Oct 13 18:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 20:14:30] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 18:51 run_atlas
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc       105 Oct 13 18:51 job.xml
[2025-10-13 20:14:30] -rw-r--r-- 2 boinc boinc 223760823 Oct 13 18:51 EVNT.46676267._004371.pool.root.1
[2025-10-13 20:14:30] -rw-r--r-- 2 boinc boinc    576715 Oct 13 18:51 input.tar.gz
[2025-10-13 20:14:30] drwxrwx--x 2 boinc boinc      4096 Oct 13 18:51 shared
[2025-10-13 20:14:30] -rw-r--r-- 2 boinc boinc     15120 Oct 13 18:51 start_atlas.sh
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc         0 Oct 13 18:51 boinc_setup_complete
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc      6441 Oct 13 18:51 init_data.xml
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc         0 Oct 13 18:51 boinc_lockfile
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc      2550 Oct 13 18:51 pandaJob.out
[2025-10-13 20:14:30] -rw------- 1 boinc boinc    972783 Oct 13 18:52 agis_schedconf.cvmfs.json
[2025-10-13 20:14:30] -rw------- 1 boinc boinc   1560580 Oct 13 18:52 agis_ddmendpoints.agis.ALL.json
[2025-10-13 20:14:30] drwx------ 4 boinc boinc      4096 Oct 13 18:52 pilot3
[2025-10-13 20:14:30] -rw------- 1 boinc boinc 203975760 Oct 13 20:13 HITS.46676269._094778.pool.root.1
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc       529 Oct 13 20:13 boinc_task_state.xml
[2025-10-13 20:14:30] -rw------- 1 boinc boinc      1018 Oct 13 20:13 memory_monitor_summary.json
[2025-10-13 20:14:30] -rw------- 1 boinc boinc    259702 Oct 13 20:13 log.46676269._094778.job.log.tgz.1
[2025-10-13 20:14:30] -rw------- 1 boinc boinc      7765 Oct 13 20:13 heartbeat.json
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc      8192 Oct 13 20:14 boinc_mmap_file
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc        27 Oct 13 20:14 wrapper_checkpoint.txt
[2025-10-13 20:14:30] -rw------- 1 boinc boinc       747 Oct 13 20:14 pilotlog.txt
[2025-10-13 20:14:30] -rw------- 1 boinc boinc        95 Oct 13 20:14 pilot_heartbeat.json
[2025-10-13 20:14:30] -rw------- 1 boinc boinc    720116 Oct 13 20:14 log.46676269._094778.job.log.1
[2025-10-13 20:14:30] -rw------- 1 boinc boinc       357 Oct 13 20:14 output.list
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc       620 Oct 13 20:14 runtime_log
[2025-10-13 20:14:30] -rw------- 1 boinc boinc   1003520 Oct 13 20:14 result.tar.gz
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc      8782 Oct 13 20:14 runtime_log.err
[2025-10-13 20:14:30] -rw------- 1 boinc boinc       659 Oct 13 20:14 05DMDmlJNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPUmNDm22zVyn.diag
[2025-10-13 20:14:30] -rw-r--r-- 1 boinc boinc     11615 Oct 13 20:14 stderr.txt
[2025-10-13 20:14:30] HITS file was successfully produced:
[2025-10-13 20:14:30] -rw------- 1 boinc boinc 203975760 Oct 13 20:13 shared/HITS.pool.root.1
[2025-10-13 20:14:30]  *** Contents of shared directory: ***
[2025-10-13 20:14:30] total 419284
[2025-10-13 20:14:30] -rw-r--r-- 2 boinc boinc 223760823 Oct 13 18:51 ATLAS.root_0
[2025-10-13 20:14:30] -rw-r--r-- 2 boinc boinc    576715 Oct 13 18:51 input.tar.gz
[2025-10-13 20:14:30] -rw-r--r-- 2 boinc boinc     15120 Oct 13 18:51 start_atlas.sh
[2025-10-13 20:14:30] -rw------- 1 boinc boinc 203975760 Oct 13 20:13 HITS.pool.root.1
[2025-10-13 20:14:30] -rw------- 1 boinc boinc   1003520 Oct 13 20:14 result.tar.gz
20:14:32 (3719061): run_atlas exited; CPU time 14107.640216
20:14:32 (3719061): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN