Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:54:46 (11672): wrapper (7.7.26015): starting
02:54:46 (11672): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 02:54:46] Arguments: --nthreads 8
[2025-10-13 02:54:46] Threads: 8
[2025-10-13 02:54:46] Checking for CVMFS
[2025-10-13 02:54:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:54:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:54:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:54:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:54:46] 2.11.2.0 17210 53973 127956 151652 3 57 16899142 18432001 1833 130560 0 49633413 99.976 2426078 35105 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 02:54:46] CVMFS is ok
[2025-10-13 02:54:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:54:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:54:46] Further information can be found at the LHC@home message board.
[2025-10-13 02:54:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:54:46] Checking for apptainer binary...
[2025-10-13 02:54:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:54:46] Running /usr/bin/apptainer --version
[2025-10-13 02:54:46] apptainer version 1.3.2-1.el7
[2025-10-13 02:54:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:54:47] c-206-14.aglt2.org
[2025-10-13 02:54:47] apptainer works
[2025-10-13 02:54:47] Set ATHENA_PROC_NUMBER=8
[2025-10-13 02:54:47] Set ATHENA_CORE_NUMBER=8
[2025-10-13 02:54:47] Starting ATLAS job with PandaID=6841125877
[2025-10-13 02:54:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:59:22]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:59:22] 2025-10-13 09:58:49,541 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:59:22] 2025-10-13 09:58:49,541 | INFO     | sum of square deviations: 1838657730.0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,543 | INFO     | sum of deviations: -2471545784.0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,543 | INFO     | mean x: 1760344013.0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,543 | INFO     | mean y: 2472127.2209944753
[2025-10-13 05:59:22] 2025-10-13 09:58:49,543 | INFO     | -- intersect: 2368747673.0887895
[2025-10-13 05:59:22] 2025-10-13 09:58:49,543 | INFO     | intersect: 2368747673.0887895
[2025-10-13 05:59:22] 2025-10-13 09:58:49,544 | INFO     | chi2: 2.2591809519396233
[2025-10-13 05:59:22] 2025-10-13 09:58:49,544 | INFO     | sum of square deviations: 1690450300.0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,546 | INFO     | sum of deviations: 9530752850.000002
[2025-10-13 05:59:22] 2025-10-13 09:58:49,546 | INFO     | mean x: 1760343860.5
[2025-10-13 05:59:22] 2025-10-13 09:58:49,546 | INFO     | mean y: 2484194.6363636362
[2025-10-13 05:59:22] 2025-10-13 09:58:49,546 | INFO     | -- intersect: -9922328303.808804
[2025-10-13 05:59:22] 2025-10-13 09:58:49,546 | INFO     | intersect: -9922328303.808804
[2025-10-13 05:59:22] 2025-10-13 09:58:49,547 | INFO     | chi2: 1.4452191940067716
[2025-10-13 05:59:22] 2025-10-13 09:58:49,547 | INFO     | current chi2=1.4452191940067716 (change=36.02906430465535 %)
[2025-10-13 05:59:22] 2025-10-13 09:58:49,547 | INFO     | sum of square deviations: 1550429070.0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,549 | INFO     | sum of deviations: 9045069934.999998
[2025-10-13 05:59:22] 2025-10-13 09:58:49,549 | INFO     | mean x: 1760343708.0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,549 | INFO     | mean y: 2483665.5263157897
[2025-10-13 05:59:22] 2025-10-13 09:58:49,549 | INFO     | -- intersect: -10267210225.402351
[2025-10-13 05:59:22] 2025-10-13 09:58:49,550 | INFO     | intersect: -10267210225.402351
[2025-10-13 05:59:22] 2025-10-13 09:58:49,550 | INFO     | chi2: 1.4458642633204313
[2025-10-13 05:59:22] 2025-10-13 09:58:49,550 | INFO     | current chi2=1.4458642633204313 (change=-0.04463470429501402 %)
[2025-10-13 05:59:22] 2025-10-13 09:58:49,550 | INFO     | right removable region: 170
[2025-10-13 05:59:22] 2025-10-13 09:58:49,551 | INFO     | sum of square deviations: 1690450300.0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,552 | INFO     | sum of deviations: -27112872184.5
[2025-10-13 05:59:22] 2025-10-13 09:58:49,552 | INFO     | mean x: 1760344165.5
[2025-10-13 05:59:22] 2025-10-13 09:58:49,553 | INFO     | mean y: 2497134.289772727
[2025-10-13 05:59:22] 2025-10-13 09:58:49,553 | INFO     | -- intersect: 28236386270.17967
[2025-10-13 05:59:22] 2025-10-13 09:58:49,553 | INFO     | intersect: 28236386270.17967
[2025-10-13 05:59:22] 2025-10-13 09:58:49,553 | INFO     | chi2: 0.9570966490711414
[2025-10-13 05:59:22] 2025-10-13 09:58:49,554 | INFO     | current chi2=0.9570966490711414 (change=57.635237308041894 %)
[2025-10-13 05:59:22] 2025-10-13 09:58:49,554 | INFO     | sum of square deviations: 1550429070.0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,555 | INFO     | sum of deviations: -25092878199.0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,556 | INFO     | mean x: 1760344318.0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,556 | INFO     | mean y: 2494876.9590643276
[2025-10-13 05:59:22] 2025-10-13 09:58:49,556 | INFO     | -- intersect: 28492740844.72573
[2025-10-13 05:59:22] 2025-10-13 09:58:49,556 | INFO     | intersect: 28492740844.72573
[2025-10-13 05:59:22] 2025-10-13 09:58:49,556 | INFO     | chi2: 0.9434673717862918
[2025-10-13 05:59:22] 2025-10-13 09:58:49,557 | INFO     | current chi2=0.9434673717862918 (change=1.424023090883956 %)
[2025-10-13 05:59:22] 2025-10-13 09:58:49,557 | INFO     | left removable region: 20
[2025-10-13 05:59:22] 2025-10-13 09:58:49,557 | INFO     | sum of square deviations: 1046484737.5
[2025-10-13 05:59:22] 2025-10-13 09:58:49,558 | INFO     | sum of deviations: -1721132384.9999995
[2025-10-13 05:59:22] 2025-10-13 09:58:49,558 | INFO     | mean x: 1760344287.5
[2025-10-13 05:59:22] 2025-10-13 09:58:49,558 | INFO     | mean y: 2493200.6133333333
[2025-10-13 05:59:22] 2025-10-13 09:58:49,558 | INFO     | -- intersect: 2897696019.5326104
[2025-10-13 05:59:22] 2025-10-13 09:58:49,558 | INFO     | intersect: 2897696019.5326104
[2025-10-13 05:59:22] 2025-10-13 09:58:49,558 | INFO     | chi2: 0.0349389618657645
[2025-10-13 05:59:22] 2025-10-13 09:58:49,558 | INFO     | -- intersect: 2897696019.5326104
[2025-10-13 05:59:22] 2025-10-13 09:58:49,558 | INFO     | current memory leak: -1.64 B/s (using 150 data points, chi2=0.03)
[2025-10-13 05:59:22] 2025-10-13 09:58:49,559 | INFO     | could have reported an average CPU frequency of 2513 MHz (10 samples)
[2025-10-13 05:59:22] 2025-10-13 09:58:49,559 | INFO     | ..............................
[2025-10-13 05:59:22] 2025-10-13 09:58:49,559 | INFO     | . Timing measurements:
[2025-10-13 05:59:22] 2025-10-13 09:58:49,559 | INFO     | . get job = 0 s
[2025-10-13 05:59:22] 2025-10-13 09:58:49,559 | INFO     | . initial setup = 2 s
[2025-10-13 05:59:22] 2025-10-13 09:58:49,559 | INFO     | . payload setup = 4 s
[2025-10-13 05:59:22] 2025-10-13 09:58:49,559 | INFO     | . stage-in = 0 s
[2025-10-13 05:59:22] 2025-10-13 09:58:49,560 | INFO     | . payload execution = 11001 s
[2025-10-13 05:59:22] 2025-10-13 09:58:49,560 | INFO     | . stage-out = 2 s
[2025-10-13 05:59:22] 2025-10-13 09:58:49,560 | INFO     | . log creation = 0 s
[2025-10-13 05:59:22] 2025-10-13 09:58:49,560 | INFO     | ..............................
[2025-10-13 05:59:22] 2025-10-13 09:58:49,667 | INFO     | time since job start (11031s) is within the limit (172800.0s)
[2025-10-13 05:59:22] 2025-10-13 09:58:49,667 | INFO     | 11033s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 05:59:22] 2025-10-13 09:58:49,924 | INFO     | 
[2025-10-13 05:59:22] 2025-10-13 09:58:49,925 | INFO     | job summary report
[2025-10-13 05:59:22] 2025-10-13 09:58:49,925 | INFO     | --------------------------------------------------
[2025-10-13 05:59:22] 2025-10-13 09:58:49,925 | INFO     | PanDA job id: 6841125877
[2025-10-13 05:59:22] 2025-10-13 09:58:49,925 | INFO     | task id: 46676269
[2025-10-13 05:59:22] 2025-10-13 09:58:49,925 | INFO     | errors: (none)
[2025-10-13 05:59:22] 2025-10-13 09:58:49,925 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:59:22] 2025-10-13 09:58:49,926 | INFO     | pilot state: finished 
[2025-10-13 05:59:22] 2025-10-13 09:58:49,926 | INFO     | transexitcode: 0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,926 | INFO     | exeerrorcode: 0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,926 | INFO     | exeerrordiag: 
[2025-10-13 05:59:22] 2025-10-13 09:58:49,926 | INFO     | exitcode: 0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,926 | INFO     | exitmsg: OK
[2025-10-13 05:59:22] 2025-10-13 09:58:49,927 | INFO     | cpuconsumptiontime: 83069 s
[2025-10-13 05:59:22] 2025-10-13 09:58:49,927 | INFO     | nevents: 400
[2025-10-13 05:59:22] 2025-10-13 09:58:49,927 | INFO     | neventsw: 0
[2025-10-13 05:59:22] 2025-10-13 09:58:49,927 | INFO     | pid: 23406
[2025-10-13 05:59:22] 2025-10-13 09:58:49,927 | INFO     | pgrp: 23406
[2025-10-13 05:59:22] 2025-10-13 09:58:49,927 | INFO     | corecount: 8
[2025-10-13 05:59:22] 2025-10-13 09:58:49,928 | INFO     | event service: False
[2025-10-13 05:59:22] 2025-10-13 09:58:49,928 | INFO     | sizes: {0: 2348743, 1: 2348885, 4: 2349147, 12: 2349175, 11009: 2378421, 11012: 2387603, 11016: 2387741}
[2025-10-13 05:59:22] 2025-10-13 09:58:49,928 | INFO     | --------------------------------------------------
[2025-10-13 05:59:22] 2025-10-13 09:58:49,928 | INFO     | 
[2025-10-13 05:59:22] 2025-10-13 09:58:49,928 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 05:59:22] 2025-10-13 09:58:49,947 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,947 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,947 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,948 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,948 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,948 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,948 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,948 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,949 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,949 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,949 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,949 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,949 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,949 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,950 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,950 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,950 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,950 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:59:22] 2025-10-13 09:58:49,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,950 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:59:22] 2025-10-13 09:58:49,951 | INFO     | job 6841125877 has completed (purged errors)
[2025-10-13 05:59:22] 2025-10-13 09:58:49,951 | INFO     | overall cleanup function is called
[2025-10-13 05:59:22] 2025-10-13 09:58:50,845 | INFO     | PID=15381 has CPU usage=10.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:59:22] 2025-10-13 09:58:50,845 | INFO     | .. there are 3 such processes running
[2025-10-13 05:59:22] 2025-10-13 09:58:50,958 | INFO     | --- collectZombieJob: --- 10, [23406]
[2025-10-13 05:59:22] 2025-10-13 09:58:50,959 | INFO     | zombie collector waiting for pid 23406
[2025-10-13 05:59:22] 2025-10-13 09:58:50,959 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:59:22] 2025-10-13 09:58:50,959 | INFO     | collected zombie processes
[2025-10-13 05:59:22] 2025-10-13 09:58:50,959 | INFO     | will attempt to kill all subprocesses of pid=23406
[2025-10-13 05:59:22] 2025-10-13 09:58:51,074 | INFO     | process IDs to be killed: [23406] (in reverse order)
[2025-10-13 05:59:22] 2025-10-13 09:58:51,124 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:59:22] 2025-10-13 09:58:51,124 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:59:22] 2025-10-13 09:58:51,129 | INFO     | did not find any defunct processes belonging to 23406
[2025-10-13 05:59:22] 2025-10-13 09:58:51,133 | INFO     | did not find any defunct processes belonging to 23406
[2025-10-13 05:59:22] 2025-10-13 09:58:51,134 | INFO     | ready for new job
[2025-10-13 05:59:22] 2025-10-13 09:58:51,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:59:22] 2025-10-13 09:58:51,136 | INFO     | ***************************************
[2025-10-13 05:59:22] 2025-10-13 09:58:51,136 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:59:22] 2025-10-13 09:58:51,136 | INFO     | ***************************************
[2025-10-13 05:59:22] 2025-10-13 09:58:51,136 | INFO     | 
[2025-10-13 05:59:22] 2025-10-13 09:58:51,137 | INFO     | architecture information:
[2025-10-13 05:59:22] 2025-10-13 09:58:51,138 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:59:22] 2025-10-13 09:58:51,151 | INFO     | cat /etc/os-release:
[2025-10-13 05:59:22] NAME="CentOS Linux"
[2025-10-13 05:59:22] VERSION="7 (Core)"
[2025-10-13 05:59:22] ID="centos"
[2025-10-13 05:59:22] ID_LIKE="rhel fedora"
[2025-10-13 05:59:22] VERSION_ID="7"
[2025-10-13 05:59:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:59:22] ANSI_COLOR="0;31"
[2025-10-13 05:59:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:59:22] HOME_URL="https://www.centos.org/"
[2025-10-13 05:59:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:59:22] 
[2025-10-13 05:59:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:59:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:59:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:59:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:59:22] 
[2025-10-13 05:59:22] 2025-10-13 09:58:51,151 | INFO     | ***************************************
[2025-10-13 05:59:22] 2025-10-13 09:58:51,654 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 05:59:22] 2025-10-13 09:58:51,670 | INFO     | sufficient remaining disk space (28258074624 B)
[2025-10-13 05:59:22] 2025-10-13 09:58:51,688 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:59:22] 2025-10-13 09:58:51,689 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:59:22] 2025-10-13 09:58:51,689 | INFO     | update_server=False
[2025-10-13 05:59:22] 2025-10-13 09:58:51,689 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:59:22] 2025-10-13 09:58:51,689 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 05:59:22] 2025-10-13 09:58:51,689 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:59:22] 2025-10-13 09:58:51,689 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:59:22] 2025-10-13 09:58:51,690 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:59:22] 2025-10-13 09:58:51,690 | INFO     | aborting loop
[2025-10-13 05:59:22] 2025-10-13 09:58:51,690 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:59:22] 2025-10-13 09:58:51,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:59:22] 2025-10-13 09:58:52,244 | INFO     | all payload control threads have been joined
[2025-10-13 05:59:22] 2025-10-13 09:58:52,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:59:22] 2025-10-13 09:58:52,549 | INFO     | all data control threads have been joined
[2025-10-13 05:59:22] 2025-10-13 09:58:52,696 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:52,696 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:52,820 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:53,045 | INFO     | all job control threads have been joined
[2025-10-13 05:59:22] 2025-10-13 09:58:53,250 | INFO     | [payload] control thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:53,305 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:53,357 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:53,425 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:53,434 | INFO     | [job] validate thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:53,523 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:53,523 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:53,555 | INFO     | [data] control thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:53,697 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:54,050 | INFO     | [job] control thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:54,170 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:54,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:59:22] 2025-10-13 09:58:55,700 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:58:56,361 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:59:22] 2025-10-13 09:59:16,093 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:59:22] 2025-10-13 09:59:17,099 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140043856877376)>', '<ExcThread(monitor, started 140043414910720)>']
[2025-10-13 05:59:22] 2025-10-13 09:59:17,815 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:59:22] 2025-10-13 09:59:17,816 | INFO     | [monitor] control thread has ended
[2025-10-13 05:59:22] 2025-10-13 09:59:22,110 | INFO     | all workflow threads have been joined
[2025-10-13 05:59:22] 2025-10-13 09:59:22,111 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:59:22] 2025-10-13 09:59:22,111 | INFO     | traces error code: 0
[2025-10-13 05:59:22] 2025-10-13 09:59:22,111 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:59:22] 2025-10-13 09:59:22,233 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:59:22] 2025-10-13 09:59:22,236 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:59:22] 2025-10-13 09:59:22,238 [wrapper] pilotpid: 15381
[2025-10-13 05:59:22] 2025-10-13 09:59:22,241 [wrapper] Pilot exit status: 0
[2025-10-13 05:59:22] 2025-10-13 09:59:22,250 [wrapper] pandaids: 6841125877
[2025-10-13 05:59:22] 2025-10-13 09:59:22,288 [wrapper] cleanup supervisor_pilot 17537 15382
[2025-10-13 05:59:22] 2025-10-13 09:59:22,291 [wrapper] Test setup, not cleaning
[2025-10-13 05:59:22] 2025-10-13 09:59:22,293 [wrapper] apfmon messages muted
[2025-10-13 05:59:22] 2025-10-13 09:59:22,296 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:59:22] 2025-10-13 09:59:22,298 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:59:22]  *** Error codes and diagnostics ***
[2025-10-13 05:59:22]     "exeErrorCode": 0,
[2025-10-13 05:59:22]     "exeErrorDiag": "",
[2025-10-13 05:59:22]     "pilotErrorCode": 0,
[2025-10-13 05:59:22]     "pilotErrorDiag": "",
[2025-10-13 05:59:22]  *** Listing of results directory ***
[2025-10-13 05:59:22] total 413644
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 05:59:22] -rwx------ 1 boincer umatlas     36292 Oct 12 22:12 runpilot2-wrapper.sh
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 22:12 queuedata.json
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas       100 Oct 13 02:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:59:22] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 02:54 run_atlas
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas       105 Oct 13 02:54 job.xml
[2025-10-13 05:59:22] -rw-r--r-- 2 boincer umatlas 220756174 Oct 13 02:54 EVNT.46676267._004865.pool.root.1
[2025-10-13 05:59:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 02:54 start_atlas.sh
[2025-10-13 05:59:22] drwxrwx--x 2 boincer umatlas      4096 Oct 13 02:54 shared
[2025-10-13 05:59:22] -rw-r--r-- 2 boincer umatlas    569675 Oct 13 02:54 input.tar.gz
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas         0 Oct 13 02:54 boinc_lockfile
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 02:54 pandaJob.out
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas    972849 Oct 13 02:54 agis_schedconf.cvmfs.json
[2025-10-13 05:59:22] drwx------ 5 boincer umatlas      4096 Oct 13 02:54 pilot3
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 05:54 init_data.xml
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas 194957605 Oct 13 05:58 HITS.46676269._094650.pool.root.1
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas       530 Oct 13 05:58 boinc_task_state.xml
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas      1053 Oct 13 05:58 memory_monitor_summary.json
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas   1560580 Oct 13 05:58 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas    423701 Oct 13 05:58 log.46676269._094650.job.log.tgz.1
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas        95 Oct 13 05:58 pilot_heartbeat.json
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas      7855 Oct 13 05:58 heartbeat.json
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 05:59 boinc_mmap_file
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas        28 Oct 13 05:59 wrapper_checkpoint.txt
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas      4552 Oct 13 05:59 pilotlog.txt
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas   1553472 Oct 13 05:59 log.46676269._094650.job.log.1
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas       357 Oct 13 05:59 output.list
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas       620 Oct 13 05:59 runtime_log
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas   1996800 Oct 13 05:59 result.tar.gz
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas      8704 Oct 13 05:59 runtime_log.err
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas       662 Oct 13 05:59 6HSNDmjDNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMTmNDmj8ZEGn.diag
[2025-10-13 05:59:22] -rw-r--r-- 1 boincer umatlas     20963 Oct 13 05:59 stderr.txt
[2025-10-13 05:59:22] HITS file was successfully produced:
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas 194957605 Oct 13 05:58 shared/HITS.pool.root.1
[2025-10-13 05:59:22]  *** Contents of shared directory: ***
[2025-10-13 05:59:22] total 408508
[2025-10-13 05:59:22] -rw-r--r-- 2 boincer umatlas 220756174 Oct 13 02:54 ATLAS.root_0
[2025-10-13 05:59:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 02:54 start_atlas.sh
[2025-10-13 05:59:22] -rw-r--r-- 2 boincer umatlas    569675 Oct 13 02:54 input.tar.gz
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas 194957605 Oct 13 05:58 HITS.pool.root.1
[2025-10-13 05:59:22] -rw------- 1 boincer umatlas   1996800 Oct 13 05:59 result.tar.gz
05:59:23 (11672): run_atlas exited; CPU time 83196.588857
05:59:23 (11672): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN