Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:21:49 (763730): wrapper (7.7.26015): starting
05:21:49 (763730): wrapper: running run_atlas (--nthreads 11)
[2025-10-13 05:21:49] Arguments: --nthreads 11
[2025-10-13 05:21:49] Threads: 11
[2025-10-13 05:21:49] Checking for CVMFS
[2025-10-13 05:21:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:21:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:21:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:21:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:21:49] 2.13.2.0 2367554 130514 250780 151656 1 545 18310285 32935937 39674 16776704 0 506677518 99.667 454227496 18123 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 05:21:49] CVMFS is ok
[2025-10-13 05:21:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:21:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:21:49] Further information can be found at the LHC@home message board.
[2025-10-13 05:21:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:21:49] Checking for apptainer binary...
[2025-10-13 05:21:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:21:49] Running /usr/bin/apptainer --version
[2025-10-13 05:21:50] apptainer version 1.4.3-1.el9
[2025-10-13 05:21:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:21:50] c7-2-15.aglt2.org
[2025-10-13 05:21:50] apptainer works
[2025-10-13 05:21:50] Set ATHENA_PROC_NUMBER=11
[2025-10-13 05:21:50] Set ATHENA_CORE_NUMBER=11
[2025-10-13 05:21:50] Starting ATLAS job with PandaID=6840852544
[2025-10-13 05:21:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:25:41]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:25:41] 2025-10-13 11:24:49,771 | INFO     | time since job start (7348s) is within the limit (172800.0s)
[2025-10-13 07:25:41] 2025-10-13 11:24:50,937 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 07:25:41] 2025-10-13 11:24:50,942 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3232.827979166666
[2025-10-13 07:25:41] 2025-10-13 11:24:51,055 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840852544/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:25:41] 2025-10-13 11:24:51,082 | INFO     | extracted standard info from prmon json
[2025-10-13 07:25:41] 2025-10-13 11:24:51,085 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 07:25:41] 2025-10-13 11:24:51,085 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 07:25:41] 2025-10-13 11:24:51,085 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 07:25:41] 2025-10-13 11:24:51,085 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 07:25:41] 2025-10-13 11:24:51,089 | INFO     | fitting pss+swap vs Time
[2025-10-13 07:25:41] 2025-10-13 11:24:51,089 | INFO     | sum of square deviations: 522495747.8655464
[2025-10-13 07:25:41] 2025-10-13 11:24:51,090 | INFO     | sum of deviations: 1076412923.9831965
[2025-10-13 07:25:41] 2025-10-13 11:24:51,090 | INFO     | mean x: 1760351013.0336134
[2025-10-13 07:25:41] 2025-10-13 11:24:51,090 | INFO     | mean y: 2334289.504201681
[2025-10-13 07:25:41] 2025-10-13 11:24:51,090 | INFO     | -- intersect: -3624230307.2739115
[2025-10-13 07:25:41] 2025-10-13 11:24:51,091 | INFO     | intersect: -3624230307.2739115
[2025-10-13 07:25:41] 2025-10-13 11:24:51,091 | INFO     | chi2: 1.8641478123211006
[2025-10-13 07:25:41] 2025-10-13 11:24:51,091 | INFO     | sum of square deviations: 459360900.3596492
[2025-10-13 07:25:41] 2025-10-13 11:24:51,091 | INFO     | sum of deviations: 1978278098.5526323
[2025-10-13 07:25:41] 2025-10-13 11:24:51,091 | INFO     | mean x: 1760350860.5350878
[2025-10-13 07:25:41] 2025-10-13 11:24:51,092 | INFO     | mean y: 2336432.236842105
[2025-10-13 07:25:41] 2025-10-13 11:24:51,118 | INFO     | -- intersect: -7578769296.261828
[2025-10-13 07:25:41] 2025-10-13 11:24:51,118 | INFO     | intersect: -7578769296.261828
[2025-10-13 07:25:41] 2025-10-13 11:24:51,118 | INFO     | chi2: 1.8655496063364183
[2025-10-13 07:25:41] 2025-10-13 11:24:51,118 | INFO     | current chi2=1.8655496063364183 (change=-0.07519757854245966 %)
[2025-10-13 07:25:41] 2025-10-13 11:24:51,118 | INFO     | right removable region: 113
[2025-10-13 07:25:41] 2025-10-13 11:24:51,118 | INFO     | sum of square deviations: 459358460.3596492
[2025-10-13 07:25:41] 2025-10-13 11:24:51,119 | INFO     | sum of deviations: -17956842370.8772
[2025-10-13 07:25:41] 2025-10-13 11:24:51,119 | INFO     | mean x: 1760351165.5350878
[2025-10-13 07:25:41] 2025-10-13 11:24:51,119 | INFO     | mean y: 2379499.7192982454
[2025-10-13 07:25:41] 2025-10-13 11:24:51,119 | INFO     | -- intersect: 68816499897.44658
[2025-10-13 07:25:41] 2025-10-13 11:24:51,119 | INFO     | intersect: 68816499897.44658
[2025-10-13 07:25:41] 2025-10-13 11:24:51,119 | INFO     | chi2: 0.12568714301057637
[2025-10-13 07:25:41] 2025-10-13 11:24:51,119 | INFO     | current chi2=0.12568714301057637 (change=93.25766217786776 %)
[2025-10-13 07:25:41] 2025-10-13 11:24:51,119 | INFO     | sum of square deviations: 401523597.85321116
[2025-10-13 07:25:41] 2025-10-13 11:24:51,120 | INFO     | sum of deviations: -15669924691.596333
[2025-10-13 07:25:41] 2025-10-13 11:24:51,120 | INFO     | mean x: 1760351318.0366971
[2025-10-13 07:25:41] 2025-10-13 11:24:51,120 | INFO     | mean y: 2373311.899082569
[2025-10-13 07:25:41] 2025-10-13 11:24:51,120 | INFO     | -- intersect: 68702127776.820335
[2025-10-13 07:25:41] 2025-10-13 11:24:51,120 | INFO     | intersect: 68702127776.820335
[2025-10-13 07:25:41] 2025-10-13 11:24:51,120 | INFO     | chi2: 0.10530045568731287
[2025-10-13 07:25:41] 2025-10-13 11:24:51,120 | INFO     | current chi2=0.10530045568731287 (change=16.220185163686942 %)
[2025-10-13 07:25:41] 2025-10-13 11:24:51,120 | INFO     | left removable region: 20
[2025-10-13 07:25:41] 2025-10-13 11:24:51,120 | INFO     | sum of square deviations: 249384838.90322557
[2025-10-13 07:25:41] 2025-10-13 11:24:51,121 | INFO     | sum of deviations: -6627238470.483871
[2025-10-13 07:25:41] 2025-10-13 11:24:51,121 | INFO     | mean x: 1760351440.032258
[2025-10-13 07:25:41] 2025-10-13 11:24:51,121 | INFO     | mean y: 2352797.1612903224
[2025-10-13 07:25:41] 2025-10-13 11:24:51,121 | INFO     | -- intersect: 46782537335.48677
[2025-10-13 07:25:41] 2025-10-13 11:24:51,121 | INFO     | intersect: 46782537335.48677
[2025-10-13 07:25:41] 2025-10-13 11:24:51,121 | INFO     | chi2: 0.057588106835242917
[2025-10-13 07:25:41] 2025-10-13 11:24:51,121 | INFO     | -- intersect: 46782537335.48677
[2025-10-13 07:25:41] 2025-10-13 11:24:51,121 | INFO     | current memory leak: -26.57 B/s (using 93 data points, chi2=0.06)
[2025-10-13 07:25:41] 2025-10-13 11:24:51,121 | INFO     | could have reported an average CPU frequency of 3210 MHz (8 samples)
[2025-10-13 07:25:41] 2025-10-13 11:24:51,122 | INFO     | ..............................
[2025-10-13 07:25:41] 2025-10-13 11:24:51,122 | INFO     | . Timing measurements:
[2025-10-13 07:25:41] 2025-10-13 11:24:51,122 | INFO     | . get job = 0 s
[2025-10-13 07:25:41] 2025-10-13 11:24:51,122 | INFO     | . initial setup = 3 s
[2025-10-13 07:25:41] 2025-10-13 11:24:51,122 | INFO     | . payload setup = 21 s
[2025-10-13 07:25:41] 2025-10-13 11:24:51,122 | INFO     | . stage-in = 0 s
[2025-10-13 07:25:41] 2025-10-13 11:24:51,122 | INFO     | . payload execution = 7266 s
[2025-10-13 07:25:41] 2025-10-13 11:24:51,122 | INFO     | . stage-out = 1 s
[2025-10-13 07:25:41] 2025-10-13 11:24:51,122 | INFO     | . log creation = 0 s
[2025-10-13 07:25:41] 2025-10-13 11:24:51,122 | INFO     | ..............................
[2025-10-13 07:25:41] 2025-10-13 11:24:51,361 | INFO     | 
[2025-10-13 07:25:41] 2025-10-13 11:24:51,361 | INFO     | job summary report
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | --------------------------------------------------
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | PanDA job id: 6840852544
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | task id: 46676269
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | errors: (none)
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | pilot state: finished 
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | transexitcode: 0
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | exeerrorcode: 0
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | exeerrordiag: 
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | exitcode: 0
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | exitmsg: OK
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | cpuconsumptiontime: 31320 s
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | nevents: 400
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | neventsw: 0
[2025-10-13 07:25:41] 2025-10-13 11:24:51,362 | INFO     | pid: 779241
[2025-10-13 07:25:41] 2025-10-13 11:24:51,363 | INFO     | pgrp: 779241
[2025-10-13 07:25:41] 2025-10-13 11:24:51,363 | INFO     | corecount: 11
[2025-10-13 07:25:41] 2025-10-13 11:24:51,363 | INFO     | event service: False
[2025-10-13 07:25:41] 2025-10-13 11:24:51,363 | INFO     | sizes: {0: 2348857, 11: 2348857, 13: 2349147, 22: 2349203, 7292: 2376400, 7293: 2376399, 7295: 2385581, 7296: 2385637, 7314: 2385831}
[2025-10-13 07:25:41] 2025-10-13 11:24:51,363 | INFO     | --------------------------------------------------
[2025-10-13 07:25:41] 2025-10-13 11:24:51,363 | INFO     | 
[2025-10-13 07:25:41] 2025-10-13 11:24:51,363 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 07:25:41] 2025-10-13 11:24:51,420 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,420 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,420 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,421 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:25:41] 2025-10-13 11:24:51,422 | INFO     | job 6840852544 has completed (purged errors)
[2025-10-13 07:25:41] 2025-10-13 11:24:51,422 | INFO     | overall cleanup function is called
[2025-10-13 07:25:41] 2025-10-13 11:24:51,975 | INFO     | PID=767709 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 07:25:41] 2025-10-13 11:24:51,976 | INFO     | .. there are 48 such processes running
[2025-10-13 07:25:41] 2025-10-13 11:24:52,456 | INFO     | --- collectZombieJob: --- 10, [779241]
[2025-10-13 07:25:41] 2025-10-13 11:24:52,456 | INFO     | zombie collector waiting for pid 779241
[2025-10-13 07:25:41] 2025-10-13 11:24:52,456 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:25:41] 2025-10-13 11:24:52,456 | INFO     | collected zombie processes
[2025-10-13 07:25:41] 2025-10-13 11:24:52,456 | INFO     | will attempt to kill all subprocesses of pid=779241
[2025-10-13 07:25:41] 2025-10-13 11:24:53,722 | INFO     | process IDs to be killed: [779241] (in reverse order)
[2025-10-13 07:25:41] 2025-10-13 11:24:54,132 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:25:41] 2025-10-13 11:24:54,134 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:25:41] 2025-10-13 11:24:54,250 | INFO     | did not find any defunct processes belonging to 779241
[2025-10-13 07:25:41] 2025-10-13 11:24:54,278 | INFO     | did not find any defunct processes belonging to 779241
[2025-10-13 07:25:41] 2025-10-13 11:24:54,278 | INFO     | ready for new job
[2025-10-13 07:25:41] 2025-10-13 11:24:54,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:25:41] 2025-10-13 11:24:54,280 | INFO     | ***************************************
[2025-10-13 07:25:41] 2025-10-13 11:24:54,280 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:25:41] 2025-10-13 11:24:54,280 | INFO     | ***************************************
[2025-10-13 07:25:41] 2025-10-13 11:24:54,280 | INFO     | 
[2025-10-13 07:25:41] 2025-10-13 11:24:54,317 | INFO     | architecture information:
[2025-10-13 07:25:41] 2025-10-13 11:24:54,336 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:25:41] 2025-10-13 11:24:54,455 | INFO     | cat /etc/os-release:
[2025-10-13 07:25:41] NAME="CentOS Linux"
[2025-10-13 07:25:41] VERSION="7 (Core)"
[2025-10-13 07:25:41] ID="centos"
[2025-10-13 07:25:41] ID_LIKE="rhel fedora"
[2025-10-13 07:25:41] VERSION_ID="7"
[2025-10-13 07:25:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:25:41] ANSI_COLOR="0;31"
[2025-10-13 07:25:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:25:41] HOME_URL="https://www.centos.org/"
[2025-10-13 07:25:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:25:41] 
[2025-10-13 07:25:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:25:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:25:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:25:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:25:41] 
[2025-10-13 07:25:41] 2025-10-13 11:24:54,455 | INFO     | ***************************************
[2025-10-13 07:25:41] 2025-10-13 11:24:54,959 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 07:25:41] 2025-10-13 11:24:55,049 | INFO     | sufficient remaining disk space (73750544384 B)
[2025-10-13 07:25:41] 2025-10-13 11:24:55,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:25:41] 2025-10-13 11:24:55,050 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:25:41] 2025-10-13 11:24:55,050 | INFO     | update_server=False
[2025-10-13 07:25:41] 2025-10-13 11:24:55,050 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:25:41] 2025-10-13 11:24:55,142 | INFO     | all payload control threads have been joined
[2025-10-13 07:25:41] 2025-10-13 11:24:55,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:25:41] 2025-10-13 11:24:55,209 | INFO     | aborting loop
[2025-10-13 07:25:41] 2025-10-13 11:24:55,380 | INFO     | all data control threads have been joined
[2025-10-13 07:25:41] 2025-10-13 11:24:55,788 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:25:41] 2025-10-13 11:24:56,049 | INFO     | all job control threads have been joined
[2025-10-13 07:25:41] 2025-10-13 11:24:56,056 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:56,148 | INFO     | [payload] control thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:56,215 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:56,378 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:25:41] 2025-10-13 11:24:56,386 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:56,389 | INFO     | [data] control thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:56,617 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:56,732 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:56,876 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:57,064 | INFO     | [job] control thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:57,092 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:57,148 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:57,174 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:57,207 | INFO     | [job] validate thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:57,384 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:24:57,395 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:25:41] 2025-10-13 11:24:57,795 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:25:01,401 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:25:41] 2025-10-13 11:25:25,297 | INFO     | PID=767709 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 07:25:41] 2025-10-13 11:25:25,298 | INFO     | .. there are 48 such processes running
[2025-10-13 07:25:41] 2025-10-13 11:25:25,306 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:25:41] 2025-10-13 11:25:25,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:25:41] 2025-10-13 11:25:25,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:25:41] 2025-10-13 11:25:33,672 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:25:41] 2025-10-13 11:25:35,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140550660278080)>', '<ExcThread(monitor, started 140550170728192)>']
[2025-10-13 07:25:41] 2025-10-13 11:25:36,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:25:41] 2025-10-13 11:25:36,376 | INFO     | [monitor] control thread has ended
[2025-10-13 07:25:41] 2025-10-13 11:25:40,754 | INFO     | all workflow threads have been joined
[2025-10-13 07:25:41] 2025-10-13 11:25:40,754 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:25:41] 2025-10-13 11:25:40,754 | INFO     | traces error code: 0
[2025-10-13 07:25:41] 2025-10-13 11:25:40,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:25:41] 2025-10-13 11:25:40,940 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:25:41] 2025-10-13 11:25:40,995 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:25:41] 2025-10-13 11:25:41,033 [wrapper] pilotpid: 767709
[2025-10-13 07:25:41] 2025-10-13 11:25:41,041 [wrapper] Pilot exit status: 0
[2025-10-13 07:25:41] 2025-10-13 11:25:41,065 [wrapper] pandaids: 6840852544
[2025-10-13 07:25:41] 2025-10-13 11:25:41,226 [wrapper] cleanup supervisor_pilot 1465829 767710
[2025-10-13 07:25:41] 2025-10-13 11:25:41,231 [wrapper] Test setup, not cleaning
[2025-10-13 07:25:41] 2025-10-13 11:25:41,239 [wrapper] apfmon messages muted
[2025-10-13 07:25:41] 2025-10-13 11:25:41,243 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:25:41] 2025-10-13 11:25:41,247 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:25:41]  *** Error codes and diagnostics ***
[2025-10-13 07:25:41]     "exeErrorCode": 0,
[2025-10-13 07:25:41]     "exeErrorDiag": "",
[2025-10-13 07:25:41]     "pilotErrorCode": 0,
[2025-10-13 07:25:41]     "pilotErrorDiag": "",
[2025-10-13 07:25:41]  *** Listing of results directory ***
[2025-10-13 07:25:41] total 416028
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 18:41 queuedata.json
[2025-10-13 07:25:41] -rwx------. 1 boincer umatlas     36292 Oct 12 18:42 runpilot2-wrapper.sh
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas       100 Oct 13 05:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:25:41] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 05:21 run_atlas
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas       105 Oct 13 05:21 job.xml
[2025-10-13 07:25:41] -rw-r--r--. 2 boincer umatlas 224471460 Oct 13 05:21 EVNT.46676267._004626.pool.root.1
[2025-10-13 07:25:41] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 05:21 shared
[2025-10-13 07:25:41] -rw-r--r--. 2 boincer umatlas    569684 Oct 13 05:21 input.tar.gz
[2025-10-13 07:25:41] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:21 start_atlas.sh
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas         0 Oct 13 05:21 boinc_lockfile
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 05:21 pandaJob.out
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas    972849 Oct 13 05:22 agis_schedconf.cvmfs.json
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:22 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:25:41] drwx------. 5 boincer umatlas      4096 Oct 13 05:22 pilot3
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas      6936 Oct 13 07:21 init_data.xml
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas 194944199 Oct 13 07:23 HITS.46676269._091373.pool.root.1
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas       530 Oct 13 07:24 boinc_task_state.xml
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas      1033 Oct 13 07:24 memory_monitor_summary.json
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas    415928 Oct 13 07:24 log.46676269._091373.job.log.tgz.1
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas      7779 Oct 13 07:24 heartbeat.json
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas        95 Oct 13 07:25 pilot_heartbeat.json
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 07:25 boinc_mmap_file
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas        27 Oct 13 07:25 wrapper_checkpoint.txt
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas      4823 Oct 13 07:25 pilotlog.txt
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas    931896 Oct 13 07:25 log.46676269._091373.job.log.1
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas       357 Oct 13 07:25 output.list
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas       620 Oct 13 07:25 runtime_log
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas   1372160 Oct 13 07:25 result.tar.gz
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas       653 Oct 13 07:25 TJyMDmKxJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmuCVMDmURWJ3m.diag
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas      8700 Oct 13 07:25 runtime_log.err
[2025-10-13 07:25:41] -rw-r--r--. 1 boincer umatlas     21288 Oct 13 07:25 stderr.txt
[2025-10-13 07:25:41] HITS file was successfully produced:
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas 194944199 Oct 13 07:23 shared/HITS.pool.root.1
[2025-10-13 07:25:41]  *** Contents of shared directory: ***
[2025-10-13 07:25:41] total 411508
[2025-10-13 07:25:41] -rw-r--r--. 2 boincer umatlas 224471460 Oct 13 05:21 ATLAS.root_0
[2025-10-13 07:25:41] -rw-r--r--. 2 boincer umatlas    569684 Oct 13 05:21 input.tar.gz
[2025-10-13 07:25:41] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 05:21 start_atlas.sh
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas 194944199 Oct 13 07:23 HITS.pool.root.1
[2025-10-13 07:25:41] -rw-------. 1 boincer umatlas   1372160 Oct 13 07:25 result.tar.gz
07:25:43 (763730): run_atlas exited; CPU time 31621.023231
07:25:43 (763730): called boinc_finish(0)

</stderr_txt>
]]>

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