Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:36:48 (2082615): wrapper (7.7.26015): starting
03:36:48 (2082615): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 03:36:48] Arguments: --nthreads 9
[2025-10-13 03:36:48] Threads: 9
[2025-10-13 03:36:48] Checking for CVMFS
[2025-10-13 03:36:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:36:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:36:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:36:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:36:50] 2.13.2.0 1149533 130394 376912 151653 1 503 29458836 32935936 34554 16776704 0 264248269 99.632 243367418 20653 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 03:36:50] CVMFS is ok
[2025-10-13 03:36:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:36:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:36:50] Further information can be found at the LHC@home message board.
[2025-10-13 03:36:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:36:50] Checking for apptainer binary...
[2025-10-13 03:36:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:36:50] Running /usr/bin/apptainer --version
[2025-10-13 03:36:51] apptainer version 1.4.3-1.el9
[2025-10-13 03:36:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:36:51] c6-2-11-4.aglt2.org
[2025-10-13 03:36:51] apptainer works
[2025-10-13 03:36:51] Set ATHENA_PROC_NUMBER=9
[2025-10-13 03:36:51] Set ATHENA_CORE_NUMBER=9
[2025-10-13 03:36:52] Starting ATLAS job with PandaID=6840961536
[2025-10-13 03:36:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:18:02]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:18:02]  storage_token=
[2025-10-13 05:18:02]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6840961536/log.46676269._091835.job.log.tgz.1
[2025-10-13 05:18:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/1a/log.46676269._091835.job.log.tgz.1
[2025-10-13 05:18:02]  workdir=None
[2025-10-13 05:18:02] ]
[2025-10-13 05:18:02] 2025-10-13 09:17:18,929 | INFO     | transferring file log.46676269._091835.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6840961536/log.46676269._091835.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 05:18:02] 2025-10-13 09:17:18,929 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6840961536/log.46676269._091835.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._091835.job
[2025-10-13 05:18:02] 2025-10-13 09:17:18,953 | INFO     | time since job start (5974s) is within the limit (172800.0s)
[2025-10-13 05:18:02] 2025-10-13 09:17:18,959 | INFO     | adding to output.list: log.46676269._091835.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/1a/log.46676269._091835.job.log.tg
[2025-10-13 05:18:02] 2025-10-13 09:17:18,960 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:18:02] 2025-10-13 09:17:18,960 | INFO     | summary of transferred files:
[2025-10-13 05:18:02] 2025-10-13 09:17:18,960 | INFO     |  -- lfn=log.46676269._091835.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:18:02] 2025-10-13 09:17:18,960 | INFO     | stage-out finished correctly
[2025-10-13 05:18:02] 2025-10-13 09:17:19,269 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:18:02] 2025-10-13 09:17:19,485 | INFO     | job 6840961536 has state=finished
[2025-10-13 05:18:02] 2025-10-13 09:17:19,485 | INFO     | preparing for final server update for job 6840961536 in state='finished'
[2025-10-13 05:18:02] 2025-10-13 09:17:19,486 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:18:02] 2025-10-13 09:17:19,486 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:18:02] 2025-10-13 09:17:19,486 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:18:02] 2025-10-13 09:17:19,486 | INFO     | job 6840961536 has finished - writing final server update
[2025-10-13 05:18:02] 2025-10-13 09:17:19,486 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:18:02] 2025-10-13 09:17:19,491 | INFO     | executing command: lscpu
[2025-10-13 05:18:02] 2025-10-13 09:17:19,593 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:18:02] 2025-10-13 09:17:19,663 | INFO     | monitor loop #382: job 0:6840961536 is in state 'finished'
[2025-10-13 05:18:02] 2025-10-13 09:17:19,663 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:18:02] 2025-10-13 09:17:20,961 | INFO     | time since job start (5976s) is within the limit (172800.0s)
[2025-10-13 05:18:02] 2025-10-13 09:17:22,179 | INFO     | monitor loop #383: job 0:6840961536 is in state 'finished'
[2025-10-13 05:18:02] 2025-10-13 09:17:22,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:18:02] 2025-10-13 09:17:22,967 | INFO     | time since job start (5978s) is within the limit (172800.0s)
[2025-10-13 05:18:02] 2025-10-13 09:17:24,717 | INFO     | monitor loop #384: job 0:6840961536 is in state 'finished'
[2025-10-13 05:18:02] 2025-10-13 09:17:24,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:18:02] 2025-10-13 09:17:24,974 | INFO     | time since job start (5980s) is within the limit (172800.0s)
[2025-10-13 05:18:02] 2025-10-13 09:17:26,990 | INFO     | time since job start (5982s) is within the limit (172800.0s)
[2025-10-13 05:18:02] 2025-10-13 09:17:27,075 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 05:18:02] 2025-10-13 09:17:27,117 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2678.290375
[2025-10-13 05:18:02] 2025-10-13 09:17:27,135 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6840961536/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:18:02] 2025-10-13 09:17:27,136 | INFO     | extracted standard info from prmon json
[2025-10-13 05:18:02] 2025-10-13 09:17:27,137 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:18:02] 2025-10-13 09:17:27,137 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:18:02] 2025-10-13 09:17:27,137 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:18:02] 2025-10-13 09:17:27,137 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:18:02] 2025-10-13 09:17:27,140 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:18:02] 2025-10-13 09:17:27,141 | INFO     | sum of square deviations: 218567270.98876375
[2025-10-13 05:18:02] 2025-10-13 09:17:27,141 | INFO     | sum of deviations: -10706301062.73034
[2025-10-13 05:18:02] 2025-10-13 09:17:27,142 | INFO     | mean x: 1760344175.011236
[2025-10-13 05:18:02] 2025-10-13 09:17:27,142 | INFO     | mean y: 2262773.7303370787
[2025-10-13 05:18:02] 2025-10-13 09:17:27,142 | INFO     | -- intersect: 86230976827.91663
[2025-10-13 05:18:02] 2025-10-13 09:17:27,142 | INFO     | intersect: 86230976827.91663
[2025-10-13 05:18:02] 2025-10-13 09:17:27,142 | INFO     | chi2: 0.1322717755207233
[2025-10-13 05:18:02] 2025-10-13 09:17:27,142 | INFO     | -- intersect: 86230976827.91663
[2025-10-13 05:18:02] 2025-10-13 09:17:27,142 | INFO     | current memory leak: -48.98 B/s (using 89 data points, chi2=0.13)
[2025-10-13 05:18:02] 2025-10-13 09:17:27,143 | INFO     | could have reported an average CPU frequency of 2702 MHz (7 samples)
[2025-10-13 05:18:02] 2025-10-13 09:17:27,143 | INFO     | ..............................
[2025-10-13 05:18:02] 2025-10-13 09:17:27,143 | INFO     | . Timing measurements:
[2025-10-13 05:18:02] 2025-10-13 09:17:27,143 | INFO     | . get job = 0 s
[2025-10-13 05:18:02] 2025-10-13 09:17:27,143 | INFO     | . initial setup = 4 s
[2025-10-13 05:18:02] 2025-10-13 09:17:27,144 | INFO     | . payload setup = 33 s
[2025-10-13 05:18:02] 2025-10-13 09:17:27,144 | INFO     | . stage-in = 0 s
[2025-10-13 05:18:02] 2025-10-13 09:17:27,144 | INFO     | . payload execution = 5874 s
[2025-10-13 05:18:02] 2025-10-13 09:17:27,144 | INFO     | . stage-out = 1 s
[2025-10-13 05:18:02] 2025-10-13 09:17:27,144 | INFO     | . log creation = 0 s
[2025-10-13 05:18:02] 2025-10-13 09:17:27,144 | INFO     | ..............................
[2025-10-13 05:18:02] 2025-10-13 09:17:27,723 | INFO     | 
[2025-10-13 05:18:02] 2025-10-13 09:17:27,723 | INFO     | job summary report
[2025-10-13 05:18:02] 2025-10-13 09:17:27,723 | INFO     | --------------------------------------------------
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | PanDA job id: 6840961536
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | task id: 46676269
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | errors: (none)
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | pilot state: finished 
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | transexitcode: 0
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | exeerrorcode: 0
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | exeerrordiag: 
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | exitcode: 0
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | exitmsg: OK
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | cpuconsumptiontime: 41356 s
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | nevents: 400
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | neventsw: 0
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | pid: 2101318
[2025-10-13 05:18:02] 2025-10-13 09:17:27,724 | INFO     | pgrp: 2101318
[2025-10-13 05:18:02] 2025-10-13 09:17:27,725 | INFO     | corecount: 9
[2025-10-13 05:18:02] 2025-10-13 09:17:27,725 | INFO     | event service: False
[2025-10-13 05:18:02] 2025-10-13 09:17:27,725 | INFO     | sizes: {0: 2347978, 1: 2348579, 2: 2348691, 3: 2348890, 14: 2348890, 25: 2348918, 28: 2349336, 36: 2349364, 5912: 2376037, 5914: 2385035, 5915: 2385091, 5922: 2385
[2025-10-13 05:18:02] 2025-10-13 09:17:27,725 | INFO     | --------------------------------------------------
[2025-10-13 05:18:02] 2025-10-13 09:17:27,725 | INFO     | 
[2025-10-13 05:18:02] 2025-10-13 09:17:27,725 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-13 05:18:02] 2025-10-13 09:17:27,745 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,746 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,747 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:18:02] 2025-10-13 09:17:27,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,747 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:18:02] 2025-10-13 09:17:27,747 | INFO     | job 6840961536 has completed (purged errors)
[2025-10-13 05:18:02] 2025-10-13 09:17:27,747 | INFO     | overall cleanup function is called
[2025-10-13 05:18:02] 2025-10-13 09:17:28,633 | INFO     | PID=2089313 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 05:18:02] 2025-10-13 09:17:28,633 | INFO     | .. there are 43 such processes running
[2025-10-13 05:18:02] 2025-10-13 09:17:28,756 | INFO     | --- collectZombieJob: --- 10, [2101318]
[2025-10-13 05:18:02] 2025-10-13 09:17:28,756 | INFO     | zombie collector waiting for pid 2101318
[2025-10-13 05:18:02] 2025-10-13 09:17:28,756 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:18:02] 2025-10-13 09:17:28,756 | INFO     | collected zombie processes
[2025-10-13 05:18:02] 2025-10-13 09:17:28,756 | INFO     | will attempt to kill all subprocesses of pid=2101318
[2025-10-13 05:18:02] 2025-10-13 09:17:29,454 | INFO     | process IDs to be killed: [2101318] (in reverse order)
[2025-10-13 05:18:02] 2025-10-13 09:17:29,602 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:18:02] 2025-10-13 09:17:29,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:18:02] 2025-10-13 09:17:29,623 | INFO     | did not find any defunct processes belonging to 2101318
[2025-10-13 05:18:02] 2025-10-13 09:17:29,645 | INFO     | did not find any defunct processes belonging to 2101318
[2025-10-13 05:18:02] 2025-10-13 09:17:29,646 | INFO     | ready for new job
[2025-10-13 05:18:02] 2025-10-13 09:17:29,646 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:18:02] 2025-10-13 09:17:29,649 | INFO     | ***************************************
[2025-10-13 05:18:02] 2025-10-13 09:17:29,650 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:18:02] 2025-10-13 09:17:29,650 | INFO     | ***************************************
[2025-10-13 05:18:02] 2025-10-13 09:17:29,650 | INFO     | 
[2025-10-13 05:18:02] 2025-10-13 09:17:29,667 | INFO     | architecture information:
[2025-10-13 05:18:02] 2025-10-13 09:17:29,668 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:18:02] 2025-10-13 09:17:29,689 | INFO     | cat /etc/os-release:
[2025-10-13 05:18:02] NAME="CentOS Linux"
[2025-10-13 05:18:02] VERSION="7 (Core)"
[2025-10-13 05:18:02] ID="centos"
[2025-10-13 05:18:02] ID_LIKE="rhel fedora"
[2025-10-13 05:18:02] VERSION_ID="7"
[2025-10-13 05:18:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:18:02] ANSI_COLOR="0;31"
[2025-10-13 05:18:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:18:02] HOME_URL="https://www.centos.org/"
[2025-10-13 05:18:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:18:02] 
[2025-10-13 05:18:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:18:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:18:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:18:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:18:02] 
[2025-10-13 05:18:02] 2025-10-13 09:17:29,690 | INFO     | ***************************************
[2025-10-13 05:18:02] 2025-10-13 09:17:30,192 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-13 05:18:02] 2025-10-13 09:17:30,309 | INFO     | sufficient remaining disk space (93766811648 B)
[2025-10-13 05:18:02] 2025-10-13 09:17:30,310 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:18:02] 2025-10-13 09:17:30,310 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:18:02] 2025-10-13 09:17:30,310 | INFO     | update_server=False
[2025-10-13 05:18:02] 2025-10-13 09:17:30,310 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:18:02] 2025-10-13 09:17:30,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:18:02] 2025-10-13 09:17:30,311 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:18:02] 2025-10-13 09:17:30,758 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:18:02] 2025-10-13 09:17:30,758 | INFO     | aborting loop
[2025-10-13 05:18:02] 2025-10-13 09:17:30,977 | INFO     | all job control threads have been joined
[2025-10-13 05:18:02] 2025-10-13 09:17:31,183 | INFO     | all payload control threads have been joined
[2025-10-13 05:18:02] 2025-10-13 09:17:31,316 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:31,358 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:31,382 | INFO     | all data control threads have been joined
[2025-10-13 05:18:02] 2025-10-13 09:17:31,626 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:31,764 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:31,897 | INFO     | [job] validate thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:31,952 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:31,983 | INFO     | [job] control thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:32,124 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:32,189 | INFO     | [payload] control thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:32,318 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:32,332 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:18:02] 2025-10-13 09:17:32,354 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:32,361 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:32,388 | INFO     | [data] control thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:33,338 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:34,320 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:40,862 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:18:02] 2025-10-13 09:17:41,868 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:18:02] 2025-10-13 09:17:54,452 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:18:02] 2025-10-13 09:17:56,529 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140345279633216)>', '<ExcThread(monitor, started 140344565954304)>']
[2025-10-13 05:18:02] 2025-10-13 09:18:01,330 | INFO     | PID=2089313 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:18:02] 2025-10-13 09:18:01,330 | INFO     | .. there are 43 such processes running
[2025-10-13 05:18:02] 2025-10-13 09:18:01,331 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:18:02] 2025-10-13 09:18:01,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:18:02] 2025-10-13 09:18:01,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:18:02] 2025-10-13 09:18:01,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:18:02] 2025-10-13 09:18:01,331 | INFO     | [monitor] control thread has ended
[2025-10-13 05:18:02] 2025-10-13 09:18:01,555 | INFO     | all workflow threads have been joined
[2025-10-13 05:18:02] 2025-10-13 09:18:01,555 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:18:02] 2025-10-13 09:18:01,556 | INFO     | traces error code: 0
[2025-10-13 05:18:02] 2025-10-13 09:18:01,556 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:18:02] 2025-10-13 09:18:01,897 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:18:02] 2025-10-13 09:18:01,900 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:18:02] 2025-10-13 09:18:01,903 [wrapper] pilotpid: 2089313
[2025-10-13 05:18:02] 2025-10-13 09:18:01,906 [wrapper] Pilot exit status: 0
[2025-10-13 05:18:02] 2025-10-13 09:18:01,934 [wrapper] pandaids: 6840961536
[2025-10-13 05:18:02] 2025-10-13 09:18:02,078 [wrapper] cleanup supervisor_pilot 2473306 2089314
[2025-10-13 05:18:02] 2025-10-13 09:18:02,083 [wrapper] Test setup, not cleaning
[2025-10-13 05:18:02] 2025-10-13 09:18:02,093 [wrapper] apfmon messages muted
[2025-10-13 05:18:02] 2025-10-13 09:18:02,096 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:18:02] 2025-10-13 09:18:02,098 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:18:02]  *** Error codes and diagnostics ***
[2025-10-13 05:18:02]     "exeErrorCode": 0,
[2025-10-13 05:18:02]     "exeErrorDiag": "",
[2025-10-13 05:18:02]     "pilotErrorCode": 0,
[2025-10-13 05:18:02]     "pilotErrorDiag": "",
[2025-10-13 05:18:02]  *** Listing of results directory ***
[2025-10-13 05:18:02] total 414868
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 18:57 pilot3.tar.gz
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:01 queuedata.json
[2025-10-13 05:18:02] -rwx------. 1 boincer umatlas     36292 Oct 12 19:03 runpilot2-wrapper.sh
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas       100 Oct 13 03:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:18:02] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 03:36 run_atlas
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas       105 Oct 13 03:36 job.xml
[2025-10-13 05:18:02] -rw-r--r--. 2 boincer umatlas 222181776 Oct 13 03:36 EVNT.46676267._004643.pool.root.1
[2025-10-13 05:18:02] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 03:36 start_atlas.sh
[2025-10-13 05:18:02] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 03:36 shared
[2025-10-13 05:18:02] -rw-r--r--. 2 boincer umatlas    569680 Oct 13 03:36 input.tar.gz
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas         0 Oct 13 03:36 boinc_lockfile
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 03:36 pandaJob.out
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas    972849 Oct 13 03:37 agis_schedconf.cvmfs.json
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas   1560580 Oct 13 03:37 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:18:02] drwx------. 5 boincer umatlas      4096 Oct 13 03:37 pilot3
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas      6857 Oct 13 05:09 init_data.xml
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas 196440280 Oct 13 05:16 HITS.46676269._091835.pool.root.1
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas       530 Oct 13 05:16 boinc_task_state.xml
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas      1043 Oct 13 05:17 memory_monitor_summary.json
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas    362893 Oct 13 05:17 log.46676269._091835.job.log.tgz.1
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas      7829 Oct 13 05:17 heartbeat.json
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:17 boinc_mmap_file
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas        27 Oct 13 05:17 wrapper_checkpoint.txt
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas        95 Oct 13 05:18 pilot_heartbeat.json
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas      4896 Oct 13 05:18 pilotlog.txt
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas    786891 Oct 13 05:18 log.46676269._091835.job.log.1
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas       357 Oct 13 05:18 output.list
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:18 runtime_log
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas   1167360 Oct 13 05:18 result.tar.gz
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas       653 Oct 13 05:18 x8sKDmuGKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFzlNDm52ekNo.diag
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas      8708 Oct 13 05:18 runtime_log.err
[2025-10-13 05:18:02] -rw-r--r--. 1 boincer umatlas     22308 Oct 13 05:18 stderr.txt
[2025-10-13 05:18:02] HITS file was successfully produced:
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas 196440280 Oct 13 05:16 shared/HITS.pool.root.1
[2025-10-13 05:18:02]  *** Contents of shared directory: ***
[2025-10-13 05:18:02] total 410540
[2025-10-13 05:18:02] -rw-r--r--. 2 boincer umatlas 222181776 Oct 13 03:36 ATLAS.root_0
[2025-10-13 05:18:02] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 03:36 start_atlas.sh
[2025-10-13 05:18:02] -rw-r--r--. 2 boincer umatlas    569680 Oct 13 03:36 input.tar.gz
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas 196440280 Oct 13 05:16 HITS.pool.root.1
[2025-10-13 05:18:02] -rw-------. 1 boincer umatlas   1167360 Oct 13 05:18 result.tar.gz
05:18:03 (2082615): run_atlas exited; CPU time 41647.517019
05:18:03 (2082615): called boinc_finish(0)

</stderr_txt>
]]>

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