Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:47:24 (13124): wrapper (7.7.26015): starting
02:47:24 (13124): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 02:47:24] Arguments: --nthreads 8
[2025-10-13 02:47:24] Threads: 8
[2025-10-13 02:47:24] Checking for CVMFS
[2025-10-13 02:47:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:47:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:47:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:47:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:47:24] 2.11.2.0 4697 53964 120228 151652 3 61 13596247 18432001 1833 130560 0 50328860 99.976 2433719 39566 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 02:47:24] CVMFS is ok
[2025-10-13 02:47:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:47:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:47:24] Further information can be found at the LHC@home message board.
[2025-10-13 02:47:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:47:24] Checking for apptainer binary...
[2025-10-13 02:47:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:47:24] Running /usr/bin/apptainer --version
[2025-10-13 02:47:24] apptainer version 1.3.2-1.el7
[2025-10-13 02:47:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:47:25] c-206-21.aglt2.org
[2025-10-13 02:47:25] apptainer works
[2025-10-13 02:47:25] Set ATHENA_PROC_NUMBER=8
[2025-10-13 02:47:25] Set ATHENA_CORE_NUMBER=8
[2025-10-13 02:47:25] Starting ATLAS job with PandaID=6841124396
[2025-10-13 02:47:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:29:54 (22632): wrapper (7.7.26015): starting
05:29:54 (22632): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 05:29:54] Arguments: --nthreads 8
[2025-10-13 05:29:54] Threads: 8
[2025-10-13 05:29:54] This job has been restarted, cleaning up previous attempt
[2025-10-13 05:29:54] Checking for CVMFS
[2025-10-13 05:29:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:29:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:29:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:29:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:29:55] 2.11.2.0 4697 54126 119068 151656 1 11 13608320 18432001 1 130560 0 50468497 99.976 2438765 39554 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 05:29:55] CVMFS is ok
[2025-10-13 05:29:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:29:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:29:55] Further information can be found at the LHC@home message board.
[2025-10-13 05:29:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:29:55] Checking for apptainer binary...
[2025-10-13 05:29:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:29:55] Running /usr/bin/apptainer --version
[2025-10-13 05:29:55] apptainer version 1.3.2-1.el7
[2025-10-13 05:29:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:29:56] c-206-21.aglt2.org
[2025-10-13 05:29:56] apptainer works
[2025-10-13 05:29:56] Set ATHENA_PROC_NUMBER=8
[2025-10-13 05:29:56] Set ATHENA_CORE_NUMBER=8
[2025-10-13 05:29:56] Starting ATLAS job with PandaID=6841124396
[2025-10-13 05:29:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:29:36]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:29:36] 2025-10-13 12:29:04,234 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:29:36] 2025-10-13 12:29:04,234 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:29:36] 2025-10-13 12:29:04,234 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:29:36] 2025-10-13 12:29:04,237 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:29:36] 2025-10-13 12:29:04,238 | INFO     | sum of square deviations: 1690450300.0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,239 | INFO     | sum of deviations: 8473254745.5
[2025-10-13 08:29:36] 2025-10-13 12:29:04,239 | INFO     | mean x: 1760353172.5
[2025-10-13 08:29:36] 2025-10-13 12:29:04,239 | INFO     | mean y: 2460605.5056818184
[2025-10-13 08:29:36] 2025-10-13 12:29:04,239 | INFO     | -- intersect: -8821177020.89576
[2025-10-13 08:29:36] 2025-10-13 12:29:04,239 | INFO     | intersect: -8821177020.89576
[2025-10-13 08:29:36] 2025-10-13 12:29:04,239 | INFO     | chi2: 2.216460811394753
[2025-10-13 08:29:36] 2025-10-13 12:29:04,240 | INFO     | sum of square deviations: 1550429070.0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,240 | INFO     | sum of deviations: 20320514346.000008
[2025-10-13 08:29:36] 2025-10-13 12:29:04,240 | INFO     | mean x: 1760353020.0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,241 | INFO     | mean y: 2473200.134502924
[2025-10-13 08:29:36] 2025-10-13 12:29:04,241 | INFO     | -- intersect: -23069384448.23534
[2025-10-13 08:29:36] 2025-10-13 12:29:04,241 | INFO     | intersect: -23069384448.23534
[2025-10-13 08:29:36] 2025-10-13 12:29:04,241 | INFO     | chi2: 1.342736164823768
[2025-10-13 08:29:36] 2025-10-13 12:29:04,241 | INFO     | current chi2=1.342736164823768 (change=39.41981027046339 %)
[2025-10-13 08:29:36] 2025-10-13 12:29:04,241 | INFO     | sum of square deviations: 1418361477.5
[2025-10-13 08:29:36] 2025-10-13 12:29:04,242 | INFO     | sum of deviations: 19644636298.000004
[2025-10-13 08:29:36] 2025-10-13 12:29:04,242 | INFO     | mean x: 1760352867.5
[2025-10-13 08:29:36] 2025-10-13 12:29:04,242 | INFO     | mean y: 2472419.481927711
[2025-10-13 08:29:36] 2025-10-13 12:29:04,243 | INFO     | -- intersect: -24378824158.82908
[2025-10-13 08:29:36] 2025-10-13 12:29:04,243 | INFO     | intersect: -24378824158.82908
[2025-10-13 08:29:36] 2025-10-13 12:29:04,243 | INFO     | chi2: 1.3438070244854152
[2025-10-13 08:29:36] 2025-10-13 12:29:04,243 | INFO     | current chi2=1.3438070244854152 (change=-0.07975205328500826 %)
[2025-10-13 08:29:36] 2025-10-13 12:29:04,243 | INFO     | right removable region: 165
[2025-10-13 08:29:36] 2025-10-13 12:29:04,243 | INFO     | sum of square deviations: 1550429070.0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,244 | INFO     | sum of deviations: -16466872103.0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,244 | INFO     | mean x: 1760353325.0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,244 | INFO     | mean y: 2487431.871345029
[2025-10-13 08:29:36] 2025-10-13 12:29:04,245 | INFO     | -- intersect: 18698933222.110424
[2025-10-13 08:29:36] 2025-10-13 12:29:04,245 | INFO     | intersect: 18698933222.110424
[2025-10-13 08:29:36] 2025-10-13 12:29:04,245 | INFO     | chi2: 0.9315137044777183
[2025-10-13 08:29:36] 2025-10-13 12:29:04,245 | INFO     | current chi2=0.9315137044777183 (change=57.97292243161546 %)
[2025-10-13 08:29:36] 2025-10-13 12:29:04,245 | INFO     | sum of square deviations: 1418361477.5
[2025-10-13 08:29:36] 2025-10-13 12:29:04,246 | INFO     | sum of deviations: -17455058134.0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,246 | INFO     | mean x: 1760353477.5
[2025-10-13 08:29:36] 2025-10-13 12:29:04,246 | INFO     | mean y: 2488527.5542168673
[2025-10-13 08:29:36] 2025-10-13 12:29:04,246 | INFO     | -- intersect: 21666269427.971096
[2025-10-13 08:29:36] 2025-10-13 12:29:04,246 | INFO     | intersect: 21666269427.971096
[2025-10-13 08:29:36] 2025-10-13 12:29:04,247 | INFO     | chi2: 0.9172021153156389
[2025-10-13 08:29:36] 2025-10-13 12:29:04,247 | INFO     | current chi2=0.9172021153156389 (change=1.5363798829029198 %)
[2025-10-13 08:29:36] 2025-10-13 12:29:04,247 | INFO     | left removable region: 20
[2025-10-13 08:29:36] 2025-10-13 12:29:04,247 | INFO     | sum of square deviations: 945282840.0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,248 | INFO     | sum of deviations: -3172130784.000002
[2025-10-13 08:29:36] 2025-10-13 12:29:04,248 | INFO     | mean x: 1760353447.0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,248 | INFO     | mean y: 2499571.227586207
[2025-10-13 08:29:36] 2025-10-13 12:29:04,248 | INFO     | -- intersect: 5909801728.483731
[2025-10-13 08:29:36] 2025-10-13 12:29:04,248 | INFO     | intersect: 5909801728.483731
[2025-10-13 08:29:36] 2025-10-13 12:29:04,249 | INFO     | chi2: 0.015441634962886827
[2025-10-13 08:29:36] 2025-10-13 12:29:04,249 | INFO     | -- intersect: 5909801728.483731
[2025-10-13 08:29:36] 2025-10-13 12:29:04,249 | INFO     | current memory leak: -3.36 B/s (using 145 data points, chi2=0.02)
[2025-10-13 08:29:36] 2025-10-13 12:29:04,249 | INFO     | could have reported an average CPU frequency of 2291 MHz (9 samples)
[2025-10-13 08:29:36] 2025-10-13 12:29:04,249 | INFO     | ..............................
[2025-10-13 08:29:36] 2025-10-13 12:29:04,249 | INFO     | . Timing measurements:
[2025-10-13 08:29:36] 2025-10-13 12:29:04,250 | INFO     | . get job = 0 s
[2025-10-13 08:29:36] 2025-10-13 12:29:04,250 | INFO     | . initial setup = 1 s
[2025-10-13 08:29:36] 2025-10-13 12:29:04,250 | INFO     | . payload setup = 6 s
[2025-10-13 08:29:36] 2025-10-13 12:29:04,250 | INFO     | . stage-in = 0 s
[2025-10-13 08:29:36] 2025-10-13 12:29:04,250 | INFO     | . payload execution = 10703 s
[2025-10-13 08:29:36] 2025-10-13 12:29:04,250 | INFO     | . stage-out = 1 s
[2025-10-13 08:29:36] 2025-10-13 12:29:04,250 | INFO     | . log creation = 0 s
[2025-10-13 08:29:36] 2025-10-13 12:29:04,250 | INFO     | ..............................
[2025-10-13 08:29:36] 2025-10-13 12:29:04,493 | INFO     | 
[2025-10-13 08:29:36] 2025-10-13 12:29:04,493 | INFO     | job summary report
[2025-10-13 08:29:36] 2025-10-13 12:29:04,494 | INFO     | --------------------------------------------------
[2025-10-13 08:29:36] 2025-10-13 12:29:04,494 | INFO     | PanDA job id: 6841124396
[2025-10-13 08:29:36] 2025-10-13 12:29:04,494 | INFO     | task id: 46676269
[2025-10-13 08:29:36] 2025-10-13 12:29:04,494 | INFO     | errors: (none)
[2025-10-13 08:29:36] 2025-10-13 12:29:04,494 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:29:36] 2025-10-13 12:29:04,494 | INFO     | pilot state: finished 
[2025-10-13 08:29:36] 2025-10-13 12:29:04,495 | INFO     | transexitcode: 0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,495 | INFO     | exeerrorcode: 0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,495 | INFO     | exeerrordiag: 
[2025-10-13 08:29:36] 2025-10-13 12:29:04,495 | INFO     | exitcode: 0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,495 | INFO     | exitmsg: OK
[2025-10-13 08:29:36] 2025-10-13 12:29:04,495 | INFO     | cpuconsumptiontime: 81877 s
[2025-10-13 08:29:36] 2025-10-13 12:29:04,495 | INFO     | nevents: 400
[2025-10-13 08:29:36] 2025-10-13 12:29:04,496 | INFO     | neventsw: 0
[2025-10-13 08:29:36] 2025-10-13 12:29:04,496 | INFO     | pid: 22505
[2025-10-13 08:29:36] 2025-10-13 12:29:04,496 | INFO     | pgrp: 22505
[2025-10-13 08:29:36] 2025-10-13 12:29:04,496 | INFO     | corecount: 8
[2025-10-13 08:29:36] 2025-10-13 12:29:04,496 | INFO     | event service: False
[2025-10-13 08:29:36] 2025-10-13 12:29:04,497 | INFO     | sizes: {0: 2348685, 1: 2348884, 5: 2349146, 11: 2349202, 10713: 2377858, 10715: 2386856, 10717: 2387040, 10720: 2387298}
[2025-10-13 08:29:36] 2025-10-13 12:29:04,497 | INFO     | --------------------------------------------------
[2025-10-13 08:29:36] 2025-10-13 12:29:04,497 | INFO     | 
[2025-10-13 08:29:36] 2025-10-13 12:29:04,497 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 08:29:36] 2025-10-13 12:29:04,516 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,516 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,517 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,517 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,517 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,517 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,517 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,517 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,518 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,518 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,518 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,518 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,518 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,518 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,519 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,519 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:29:36] 2025-10-13 12:29:04,519 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,519 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:29:36] 2025-10-13 12:29:04,520 | INFO     | job 6841124396 has completed (purged errors)
[2025-10-13 08:29:36] 2025-10-13 12:29:04,520 | INFO     | overall cleanup function is called
[2025-10-13 08:29:36] 2025-10-13 12:29:05,528 | INFO     | --- collectZombieJob: --- 10, [22505]
[2025-10-13 08:29:36] 2025-10-13 12:29:05,529 | INFO     | zombie collector waiting for pid 22505
[2025-10-13 08:29:36] 2025-10-13 12:29:05,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:29:36] 2025-10-13 12:29:05,529 | INFO     | collected zombie processes
[2025-10-13 08:29:36] 2025-10-13 12:29:05,529 | INFO     | will attempt to kill all subprocesses of pid=22505
[2025-10-13 08:29:36] 2025-10-13 12:29:05,643 | INFO     | process IDs to be killed: [22505] (in reverse order)
[2025-10-13 08:29:36] 2025-10-13 12:29:05,688 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:29:36] 2025-10-13 12:29:05,689 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:29:36] 2025-10-13 12:29:05,691 | INFO     | did not find any defunct processes belonging to 22505
[2025-10-13 08:29:36] 2025-10-13 12:29:05,694 | INFO     | did not find any defunct processes belonging to 22505
[2025-10-13 08:29:36] 2025-10-13 12:29:05,694 | INFO     | ready for new job
[2025-10-13 08:29:36] 2025-10-13 12:29:05,694 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:29:36] 2025-10-13 12:29:05,696 | INFO     | ***************************************
[2025-10-13 08:29:36] 2025-10-13 12:29:05,696 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:29:36] 2025-10-13 12:29:05,696 | INFO     | ***************************************
[2025-10-13 08:29:36] 2025-10-13 12:29:05,696 | INFO     | 
[2025-10-13 08:29:36] 2025-10-13 12:29:05,697 | INFO     | architecture information:
[2025-10-13 08:29:36] 2025-10-13 12:29:05,698 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:29:36] 2025-10-13 12:29:05,712 | INFO     | cat /etc/os-release:
[2025-10-13 08:29:36] NAME="CentOS Linux"
[2025-10-13 08:29:36] VERSION="7 (Core)"
[2025-10-13 08:29:36] ID="centos"
[2025-10-13 08:29:36] ID_LIKE="rhel fedora"
[2025-10-13 08:29:36] VERSION_ID="7"
[2025-10-13 08:29:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:29:36] ANSI_COLOR="0;31"
[2025-10-13 08:29:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:29:36] HOME_URL="https://www.centos.org/"
[2025-10-13 08:29:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:29:36] 
[2025-10-13 08:29:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:29:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:29:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:29:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:29:36] 
[2025-10-13 08:29:36] 2025-10-13 12:29:05,712 | INFO     | ***************************************
[2025-10-13 08:29:36] 2025-10-13 12:29:06,215 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 08:29:36] 2025-10-13 12:29:06,231 | INFO     | sufficient remaining disk space (28244443136 B)
[2025-10-13 08:29:36] 2025-10-13 12:29:06,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:29:36] 2025-10-13 12:29:06,232 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:29:36] 2025-10-13 12:29:06,232 | INFO     | update_server=False
[2025-10-13 08:29:36] 2025-10-13 12:29:06,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:29:36] 2025-10-13 12:29:06,232 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:29:36] 2025-10-13 12:29:06,392 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:29:36] 2025-10-13 12:29:06,393 | INFO     | aborting loop
[2025-10-13 08:29:36] 2025-10-13 12:29:06,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:29:36] 2025-10-13 12:29:06,853 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:29:36] 2025-10-13 12:29:06,959 | INFO     | all payload control threads have been joined
[2025-10-13 08:29:36] 2025-10-13 12:29:07,237 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:07,238 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:07,274 | INFO     | all data control threads have been joined
[2025-10-13 08:29:36] 2025-10-13 12:29:07,336 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:07,398 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:07,401 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:07,564 | INFO     | all job control threads have been joined
[2025-10-13 08:29:36] 2025-10-13 12:29:07,576 | INFO     | [job] validate thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:07,816 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:07,965 | INFO     | [payload] control thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:08,000 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:08,025 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:08,117 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:08,279 | INFO     | [data] control thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:08,569 | INFO     | [job] control thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:08,701 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:08,733 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:10,859 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:29:36] 2025-10-13 12:29:25,333 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:29:36] 2025-10-13 12:29:27,054 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125850060608)>', '<ExcThread(monitor, started 140124968965888)>']
[2025-10-13 08:29:36] 2025-10-13 12:29:32,080 | INFO     | all workflow threads have been joined
[2025-10-13 08:29:36] 2025-10-13 12:29:32,080 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:29:36] 2025-10-13 12:29:32,081 | INFO     | traces error code: 0
[2025-10-13 08:29:36] 2025-10-13 12:29:32,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:29:36] 2025-10-13 12:29:36,275 | INFO     | PID=2489 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 08:29:36] 2025-10-13 12:29:36,275 | INFO     | .. there are 2 such processes running
[2025-10-13 08:29:36] 2025-10-13 12:29:36,276 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:29:36] 2025-10-13 12:29:36,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:29:36] 2025-10-13 12:29:36,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:29:36] 2025-10-13 12:29:36,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:29:36] 2025-10-13 12:29:36,276 | INFO     | [monitor] control thread has ended
[2025-10-13 08:29:36] 2025-10-13 12:29:36,369 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:29:36] 2025-10-13 12:29:36,372 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:29:36] 2025-10-13 12:29:36,375 [wrapper] pilotpid: 2489
[2025-10-13 08:29:36] 2025-10-13 12:29:36,379 [wrapper] Pilot exit status: 0
[2025-10-13 08:29:36] 2025-10-13 12:29:36,391 [wrapper] pandaids: 6841124396 6841124396
[2025-10-13 08:29:36] 2025-10-13 12:29:36,429 [wrapper] cleanup supervisor_pilot  2846 2491
[2025-10-13 08:29:36] 2025-10-13 12:29:36,433 [wrapper] Test setup, not cleaning
[2025-10-13 08:29:36] 2025-10-13 12:29:36,436 [wrapper] apfmon messages muted
[2025-10-13 08:29:36] 2025-10-13 12:29:36,440 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:29:36] 2025-10-13 12:29:36,443 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:29:36]  *** Error codes and diagnostics ***
[2025-10-13 08:29:36]     "exeErrorCode": 0,
[2025-10-13 08:29:36]     "exeErrorDiag": "",
[2025-10-13 08:29:36]     "pilotErrorCode": 0,
[2025-10-13 08:29:36]     "pilotErrorDiag": "",
[2025-10-13 08:29:36]  *** Listing of results directory ***
[2025-10-13 08:29:36] total 623888
[2025-10-13 08:29:36] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 21:18 pilot3.tar.gz
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 21:42 queuedata.json
[2025-10-13 08:29:36] -rwx------ 1 boincer umatlas     36292 Oct 12 21:43 runpilot2-wrapper.sh
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas       100 Oct 13 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:29:36] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 02:47 run_atlas
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas       105 Oct 13 02:47 job.xml
[2025-10-13 08:29:36] -rw-r--r-- 3 boincer umatlas 220272322 Oct 13 02:47 EVNT.46676267._004364.pool.root.1
[2025-10-13 08:29:36] -rw-r--r-- 3 boincer umatlas 220272322 Oct 13 02:47 ATLAS.root_0
[2025-10-13 08:29:36] drwxrwx--x 2 boincer umatlas      4096 Oct 13 02:47 shared
[2025-10-13 08:29:36] -rw-r--r-- 2 boincer umatlas    569682 Oct 13 02:47 input.tar.gz
[2025-10-13 08:29:36] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 02:47 start_atlas.sh
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas         0 Oct 13 02:47 boinc_lockfile
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 05:29 pandaJob.out
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas    972849 Oct 13 05:30 agis_schedconf.cvmfs.json
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 08:22 init_data.xml
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas 190569741 Oct 13 08:28 HITS.46676269._094304.pool.root.1
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas       532 Oct 13 08:28 boinc_task_state.xml
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas      1049 Oct 13 08:28 memory_monitor_summary.json
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas   1560580 Oct 13 08:28 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas    422128 Oct 13 08:28 log.46676269._094304.job.log.tgz.1
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas      7852 Oct 13 08:29 heartbeat.json
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas        29 Oct 13 08:29 wrapper_checkpoint.txt
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 08:29 boinc_mmap_file
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas       819 Oct 13 08:29 pilotlog.txt
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas        96 Oct 13 08:29 pilot_heartbeat.json
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas   1499505 Oct 13 08:29 log.46676269._094304.job.log.1
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas       357 Oct 13 08:29 output.list
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas       620 Oct 13 08:29 runtime_log
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas   1945600 Oct 13 08:29 result.tar.gz
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas       786 Oct 13 08:29 ubPKDmrlMS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3OmNDmTbuz8n.diag
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas      8789 Oct 13 08:29 runtime_log.err
[2025-10-13 08:29:36] -rw-r--r-- 1 boincer umatlas     23016 Oct 13 08:29 stderr.txt
[2025-10-13 08:29:36] HITS file was successfully produced:
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas 190569741 Oct 13 08:28 shared/HITS.pool.root.1
[2025-10-13 08:29:36]  *** Contents of shared directory: ***
[2025-10-13 08:29:36] total 403696
[2025-10-13 08:29:36] -rw-r--r-- 3 boincer umatlas 220272322 Oct 13 02:47 ATLAS.root_0
[2025-10-13 08:29:36] -rw-r--r-- 2 boincer umatlas    569682 Oct 13 02:47 input.tar.gz
[2025-10-13 08:29:36] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 02:47 start_atlas.sh
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas 190569741 Oct 13 08:28 HITS.pool.root.1
[2025-10-13 08:29:36] -rw------- 1 boincer umatlas   1945600 Oct 13 08:29 result.tar.gz
08:29:38 (22632): run_atlas exited; CPU time 82027.085639
08:29:38 (22632): called boinc_finish(0)

</stderr_txt>
]]>

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