Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:53:57 (13068): wrapper (7.7.26015): starting
02:53:57 (13068): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 02:53:57] Arguments: --nthreads 12
[2025-10-13 02:53:57] Threads: 12
[2025-10-13 02:53:57] Checking for CVMFS
[2025-10-13 02:53:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:53:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:53:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:53:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:53:57] 2.11.2.0 2998 223941 104348 151652 0 56 16121616 20275201 1 130560 1 110007451 99.984 13410279 12721 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 02:53:57] CVMFS is ok
[2025-10-13 02:53:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:53:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:53:57] Further information can be found at the LHC@home message board.
[2025-10-13 02:53:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:53:57] Checking for apptainer binary...
[2025-10-13 02:53:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:53:57] Running /usr/bin/apptainer --version
[2025-10-13 02:53:57] apptainer version 1.3.2-1.el7
[2025-10-13 02:53:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:53:58] c-205-25.aglt2.org
[2025-10-13 02:53:58] apptainer works
[2025-10-13 02:53:58] Set ATHENA_PROC_NUMBER=12
[2025-10-13 02:53:58] Set ATHENA_CORE_NUMBER=12
[2025-10-13 02:53:58] Starting ATLAS job with PandaID=6841241489
[2025-10-13 02:53:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:04:25]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:04:25]  status_code=0
[2025-10-13 04:04:25]  storage_token=
[2025-10-13 04:04:25]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841241489/log.46676269._094946.job.log.tgz.1
[2025-10-13 04:04:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/d2/log.46676269._094946.job.log.tgz.1
[2025-10-13 04:04:25]  workdir=None
[2025-10-13 04:04:25] ]
[2025-10-13 04:04:25] 2025-10-13 08:03:45,237 | INFO     | transferring file log.46676269._094946.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841241489/log.46676269._094946.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 04:04:25] 2025-10-13 08:03:45,237 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841241489/log.46676269._094946.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._094946.job
[2025-10-13 04:04:25] 2025-10-13 08:03:45,258 | INFO     | adding to output.list: log.46676269._094946.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/d2/log.46676269._094946.job.log.tg
[2025-10-13 04:04:25] 2025-10-13 08:03:45,259 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 04:04:25] 2025-10-13 08:03:45,259 | INFO     | summary of transferred files:
[2025-10-13 04:04:25] 2025-10-13 08:03:45,260 | INFO     |  -- lfn=log.46676269._094946.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 04:04:25] 2025-10-13 08:03:45,260 | INFO     | stage-out finished correctly
[2025-10-13 04:04:25] 2025-10-13 08:03:45,387 | INFO     | PID=16795 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 04:04:25] 2025-10-13 08:03:46,388 | INFO     | time since job start (4173s) is within the limit (172800.0s)
[2025-10-13 04:04:25] 2025-10-13 08:03:46,910 | INFO     | monitor loop #312: job 0:6841241489 is in state 'finished'
[2025-10-13 04:04:25] 2025-10-13 08:03:46,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:04:25] 2025-10-13 08:03:47,826 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 04:04:25] 2025-10-13 08:03:47,906 | INFO     | job 6841241489 has state=finished
[2025-10-13 04:04:25] 2025-10-13 08:03:47,907 | INFO     | preparing for final server update for job 6841241489 in state='finished'
[2025-10-13 04:04:25] 2025-10-13 08:03:47,907 | INFO     | this job has now completed (state=finished)
[2025-10-13 04:04:25] 2025-10-13 08:03:47,907 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 04:04:25] 2025-10-13 08:03:47,908 | INFO     | log transfer has been attempted: DONE
[2025-10-13 04:04:25] 2025-10-13 08:03:47,908 | INFO     | job 6841241489 has finished - writing final server update
[2025-10-13 04:04:25] 2025-10-13 08:03:47,908 | INFO     | total number of processed events: 400 (read)
[2025-10-13 04:04:25] 2025-10-13 08:03:47,910 | INFO     | executing command: lscpu
[2025-10-13 04:04:25] 2025-10-13 08:03:47,939 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 04:04:25] 2025-10-13 08:03:48,390 | INFO     | time since job start (4175s) is within the limit (172800.0s)
[2025-10-13 04:04:25] 2025-10-13 08:03:49,413 | INFO     | monitor loop #313: job 0:6841241489 is in state 'finished'
[2025-10-13 04:04:25] 2025-10-13 08:03:49,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:04:25] 2025-10-13 08:03:50,396 | INFO     | time since job start (4177s) is within the limit (172800.0s)
[2025-10-13 04:04:25] 2025-10-13 08:03:51,916 | INFO     | monitor loop #314: job 0:6841241489 is in state 'finished'
[2025-10-13 04:04:25] 2025-10-13 08:03:51,916 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:04:25] 2025-10-13 08:03:52,402 | INFO     | time since job start (4179s) is within the limit (172800.0s)
[2025-10-13 04:04:25] 2025-10-13 08:03:52,574 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 04:04:25] 2025-10-13 08:03:52,577 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.75
[2025-10-13 04:04:25] 2025-10-13 08:03:52,580 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841241489/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 04:04:25] 2025-10-13 08:03:52,581 | INFO     | extracted standard info from prmon json
[2025-10-13 04:04:25] 2025-10-13 08:03:52,581 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 04:04:25] 2025-10-13 08:03:52,581 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 04:04:25] 2025-10-13 08:03:52,582 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 04:04:25] 2025-10-13 08:03:52,582 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 04:04:25] 2025-10-13 08:03:52,584 | INFO     | fitting pss+swap vs Time
[2025-10-13 04:04:25] 2025-10-13 08:03:52,584 | INFO     | sum of square deviations: 70364110.0
[2025-10-13 04:04:25] 2025-10-13 08:03:52,585 | INFO     | sum of deviations: -6193911208.000002
[2025-10-13 04:04:25] 2025-10-13 08:03:52,585 | INFO     | mean x: 1760340617.0
[2025-10-13 04:04:25] 2025-10-13 08:03:52,585 | INFO     | mean y: 2756507.3606557376
[2025-10-13 04:04:25] 2025-10-13 08:03:52,585 | INFO     | -- intersect: 154959501892.67056
[2025-10-13 04:04:25] 2025-10-13 08:03:52,585 | INFO     | intersect: 154959501892.67056
[2025-10-13 04:04:25] 2025-10-13 08:03:52,585 | INFO     | chi2: 0.05174461397417985
[2025-10-13 04:04:25] 2025-10-13 08:03:52,585 | INFO     | -- intersect: 154959501892.67056
[2025-10-13 04:04:25] 2025-10-13 08:03:52,586 | INFO     | current memory leak: -88.03 B/s (using 61 data points, chi2=0.05)
[2025-10-13 04:04:25] 2025-10-13 08:03:52,586 | INFO     | could have reported an average CPU frequency of 2037 MHz (6 samples)
[2025-10-13 04:04:25] 2025-10-13 08:03:52,586 | INFO     | ..............................
[2025-10-13 04:04:25] 2025-10-13 08:03:52,586 | INFO     | . Timing measurements:
[2025-10-13 04:04:25] 2025-10-13 08:03:52,586 | INFO     | . get job = 0 s
[2025-10-13 04:04:25] 2025-10-13 08:03:52,586 | INFO     | . initial setup = 2 s
[2025-10-13 04:04:25] 2025-10-13 08:03:52,586 | INFO     | . payload setup = 7 s
[2025-10-13 04:04:25] 2025-10-13 08:03:52,586 | INFO     | . stage-in = 0 s
[2025-10-13 04:04:25] 2025-10-13 08:03:52,587 | INFO     | . payload execution = 4144 s
[2025-10-13 04:04:25] 2025-10-13 08:03:52,587 | INFO     | . stage-out = 0 s
[2025-10-13 04:04:25] 2025-10-13 08:03:52,587 | INFO     | . log creation = 0 s
[2025-10-13 04:04:25] 2025-10-13 08:03:52,587 | INFO     | ..............................
[2025-10-13 04:04:25] 2025-10-13 08:03:52,668 | INFO     | 
[2025-10-13 04:04:25] 2025-10-13 08:03:52,669 | INFO     | job summary report
[2025-10-13 04:04:25] 2025-10-13 08:03:52,669 | INFO     | --------------------------------------------------
[2025-10-13 04:04:25] 2025-10-13 08:03:52,669 | INFO     | PanDA job id: 6841241489
[2025-10-13 04:04:25] 2025-10-13 08:03:52,669 | INFO     | task id: 46676269
[2025-10-13 04:04:25] 2025-10-13 08:03:52,669 | INFO     | errors: (none)
[2025-10-13 04:04:25] 2025-10-13 08:03:52,669 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 04:04:25] 2025-10-13 08:03:52,670 | INFO     | pilot state: finished 
[2025-10-13 04:04:25] 2025-10-13 08:03:52,670 | INFO     | transexitcode: 0
[2025-10-13 04:04:25] 2025-10-13 08:03:52,670 | INFO     | exeerrorcode: 0
[2025-10-13 04:04:25] 2025-10-13 08:03:52,670 | INFO     | exeerrordiag: 
[2025-10-13 04:04:25] 2025-10-13 08:03:52,670 | INFO     | exitcode: 0
[2025-10-13 04:04:25] 2025-10-13 08:03:52,670 | INFO     | exitmsg: OK
[2025-10-13 04:04:25] 2025-10-13 08:03:52,671 | INFO     | cpuconsumptiontime: 45243 s
[2025-10-13 04:04:25] 2025-10-13 08:03:52,671 | INFO     | nevents: 400
[2025-10-13 04:04:25] 2025-10-13 08:03:52,671 | INFO     | neventsw: 0
[2025-10-13 04:04:25] 2025-10-13 08:03:52,671 | INFO     | pid: 23165
[2025-10-13 04:04:25] 2025-10-13 08:03:52,671 | INFO     | pgrp: 23165
[2025-10-13 04:04:25] 2025-10-13 08:03:52,671 | INFO     | corecount: 12
[2025-10-13 04:04:25] 2025-10-13 08:03:52,671 | INFO     | event service: False
[2025-10-13 04:04:25] 2025-10-13 08:03:52,672 | INFO     | sizes: {0: 2348636, 1: 2348835, 5: 2349097, 11: 2349153, 4155: 2384020, 4158: 2384020, 4163: 2384342}
[2025-10-13 04:04:25] 2025-10-13 08:03:52,672 | INFO     | --------------------------------------------------
[2025-10-13 04:04:25] 2025-10-13 08:03:52,672 | INFO     | 
[2025-10-13 04:04:25] 2025-10-13 08:03:52,672 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 04:04:25] 2025-10-13 08:03:52,698 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,698 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,698 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,698 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,699 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,699 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,699 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,699 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,699 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,699 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,700 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,700 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,700 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,700 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,700 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,701 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:04:25] 2025-10-13 08:03:52,701 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,701 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:04:25] 2025-10-13 08:03:52,701 | INFO     | job 6841241489 has completed (purged errors)
[2025-10-13 04:04:25] 2025-10-13 08:03:52,702 | INFO     | overall cleanup function is called
[2025-10-13 04:04:25] 2025-10-13 08:03:53,710 | INFO     | --- collectZombieJob: --- 10, [23165]
[2025-10-13 04:04:25] 2025-10-13 08:03:53,710 | INFO     | zombie collector waiting for pid 23165
[2025-10-13 04:04:25] 2025-10-13 08:03:53,710 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:04:25] 2025-10-13 08:03:53,710 | INFO     | collected zombie processes
[2025-10-13 04:04:25] 2025-10-13 08:03:53,711 | INFO     | will attempt to kill all subprocesses of pid=23165
[2025-10-13 04:04:25] 2025-10-13 08:03:53,801 | INFO     | process IDs to be killed: [23165] (in reverse order)
[2025-10-13 04:04:25] 2025-10-13 08:03:53,853 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:04:25] 2025-10-13 08:03:53,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:04:25] 2025-10-13 08:03:53,856 | INFO     | did not find any defunct processes belonging to 23165
[2025-10-13 04:04:25] 2025-10-13 08:03:53,858 | INFO     | did not find any defunct processes belonging to 23165
[2025-10-13 04:04:25] 2025-10-13 08:03:53,859 | INFO     | ready for new job
[2025-10-13 04:04:25] 2025-10-13 08:03:53,859 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:04:25] 2025-10-13 08:03:53,860 | INFO     | ***************************************
[2025-10-13 04:04:25] 2025-10-13 08:03:53,860 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:04:25] 2025-10-13 08:03:53,860 | INFO     | ***************************************
[2025-10-13 04:04:25] 2025-10-13 08:03:53,860 | INFO     | 
[2025-10-13 04:04:25] 2025-10-13 08:03:53,861 | INFO     | architecture information:
[2025-10-13 04:04:25] 2025-10-13 08:03:53,861 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:04:25] 2025-10-13 08:03:53,876 | INFO     | cat /etc/os-release:
[2025-10-13 04:04:25] NAME="CentOS Linux"
[2025-10-13 04:04:25] VERSION="7 (Core)"
[2025-10-13 04:04:25] ID="centos"
[2025-10-13 04:04:25] ID_LIKE="rhel fedora"
[2025-10-13 04:04:25] VERSION_ID="7"
[2025-10-13 04:04:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:04:25] ANSI_COLOR="0;31"
[2025-10-13 04:04:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:04:25] HOME_URL="https://www.centos.org/"
[2025-10-13 04:04:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:04:25] 
[2025-10-13 04:04:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:04:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:04:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:04:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:04:25] 
[2025-10-13 04:04:25] 2025-10-13 08:03:53,876 | INFO     | ***************************************
[2025-10-13 04:04:25] 2025-10-13 08:03:54,379 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 04:04:25] 2025-10-13 08:03:54,395 | INFO     | sufficient remaining disk space (29370613760 B)
[2025-10-13 04:04:25] 2025-10-13 08:03:54,396 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:04:25] 2025-10-13 08:03:54,396 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:04:25] 2025-10-13 08:03:54,396 | INFO     | update_server=False
[2025-10-13 04:04:25] 2025-10-13 08:03:54,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:04:25] 2025-10-13 08:03:54,396 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 04:04:25] 2025-10-13 08:03:54,397 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:04:25] 2025-10-13 08:03:54,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:04:25] 2025-10-13 08:03:54,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:04:25] 2025-10-13 08:03:54,397 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:04:25] 2025-10-13 08:03:54,398 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:04:25] 2025-10-13 08:03:54,419 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 04:04:25] 2025-10-13 08:03:54,420 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 04:04:25] 2025-10-13 08:03:54,420 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:04:25] 2025-10-13 08:03:54,420 | INFO     | will abort loop
[2025-10-13 04:04:25] 2025-10-13 08:03:54,926 | INFO     | all job control threads have been joined
[2025-10-13 04:04:25] 2025-10-13 08:03:55,246 | INFO     | all data control threads have been joined
[2025-10-13 04:04:25] 2025-10-13 08:03:55,400 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:55,402 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:55,425 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:55,480 | INFO     | all payload control threads have been joined
[2025-10-13 04:04:25] 2025-10-13 08:03:55,491 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:55,530 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:55,589 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:55,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:04:25] 2025-10-13 08:03:55,930 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:55,930 | INFO     | [job] control thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:56,252 | INFO     | [data] control thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:56,486 | INFO     | [payload] control thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:56,512 | INFO     | [job] validate thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:56,716 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:56,766 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:57,869 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:03:58,402 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:04:04,814 | INFO     | job.realtimelogging is not enabled
[2025-10-13 04:04:25] 2025-10-13 08:04:05,820 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:04:25] 2025-10-13 08:04:19,920 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:04:25] 2025-10-13 08:04:20,352 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140358402852672)>', '<ExcThread(monitor, started 140357366961920)>']
[2025-10-13 04:04:25] 2025-10-13 08:04:20,510 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:04:25] 2025-10-13 08:04:20,511 | INFO     | [monitor] control thread has ended
[2025-10-13 04:04:25] 2025-10-13 08:04:25,377 | INFO     | all workflow threads have been joined
[2025-10-13 04:04:25] 2025-10-13 08:04:25,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:04:25] 2025-10-13 08:04:25,377 | INFO     | traces error code: 0
[2025-10-13 04:04:25] 2025-10-13 08:04:25,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:04:25] 2025-10-13 08:04:25,464 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:04:25] 2025-10-13 08:04:25,468 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:04:25] 2025-10-13 08:04:25,472 [wrapper] pilotpid: 16795
[2025-10-13 04:04:25] 2025-10-13 08:04:25,475 [wrapper] Pilot exit status: 0
[2025-10-13 04:04:25] 2025-10-13 08:04:25,490 [wrapper] pandaids: 6841241489
[2025-10-13 04:04:25] 2025-10-13 08:04:25,528 [wrapper] cleanup supervisor_pilot 30135 16796
[2025-10-13 04:04:25] 2025-10-13 08:04:25,532 [wrapper] Test setup, not cleaning
[2025-10-13 04:04:25] 2025-10-13 08:04:25,549 [wrapper] apfmon messages muted
[2025-10-13 04:04:25] 2025-10-13 08:04:25,553 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:04:25] 2025-10-13 08:04:25,556 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:04:25]  *** Error codes and diagnostics ***
[2025-10-13 04:04:25]     "exeErrorCode": 0,
[2025-10-13 04:04:25]     "exeErrorDiag": "",
[2025-10-13 04:04:25]     "pilotErrorCode": 0,
[2025-10-13 04:04:25]     "pilotErrorDiag": "",
[2025-10-13 04:04:25]  *** Listing of results directory ***
[2025-10-13 04:04:25] total 404580
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 22:21 queuedata.json
[2025-10-13 04:04:25] -rwx------ 1 boincer umatlas     36292 Oct 12 22:22 runpilot2-wrapper.sh
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas       100 Oct 13 02:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:04:25] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 02:53 run_atlas
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas       105 Oct 13 02:53 job.xml
[2025-10-13 04:04:25] -rw-r--r-- 2 boincer umatlas 218939220 Oct 13 02:53 EVNT.46676267._002426.pool.root.1
[2025-10-13 04:04:25] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 02:53 start_atlas.sh
[2025-10-13 04:04:25] drwxrwx--x 2 boincer umatlas      4096 Oct 13 02:53 shared
[2025-10-13 04:04:25] -rw-r--r-- 2 boincer umatlas    569684 Oct 13 02:53 input.tar.gz
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas         0 Oct 13 02:53 boinc_lockfile
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 02:53 pandaJob.out
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas    972849 Oct 13 02:54 agis_schedconf.cvmfs.json
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas   1560580 Oct 13 02:54 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:04:25] drwx------ 5 boincer umatlas      4096 Oct 13 02:54 pilot3
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas        95 Oct 13 04:03 pilot_heartbeat.json
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas 189467225 Oct 13 04:03 HITS.46676269._094946.pool.root.1
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas       530 Oct 13 04:03 boinc_task_state.xml
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas      1049 Oct 13 04:03 memory_monitor_summary.json
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas    383108 Oct 13 04:03 log.46676269._094946.job.log.tgz.1
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 04:03 init_data.xml
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas      7855 Oct 13 04:03 heartbeat.json
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 04:04 boinc_mmap_file
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas        27 Oct 13 04:04 wrapper_checkpoint.txt
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas      4810 Oct 13 04:04 pilotlog.txt
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas    609914 Oct 13 04:04 log.46676269._094946.job.log.1
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas       357 Oct 13 04:04 output.list
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas       620 Oct 13 04:04 runtime_log
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas   1013760 Oct 13 04:04 result.tar.gz
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas       659 Oct 13 04:04 xF9KDmfNNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcVmNDmTaXalm.diag
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 04:04 runtime_log.err
[2025-10-13 04:04:25] -rw-r--r-- 1 boincer umatlas     22070 Oct 13 04:04 stderr.txt
[2025-10-13 04:04:25] HITS file was successfully produced:
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas 189467225 Oct 13 04:03 shared/HITS.pool.root.1
[2025-10-13 04:04:25]  *** Contents of shared directory: ***
[2025-10-13 04:04:25] total 400408
[2025-10-13 04:04:25] -rw-r--r-- 2 boincer umatlas 218939220 Oct 13 02:53 ATLAS.root_0
[2025-10-13 04:04:25] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 02:53 start_atlas.sh
[2025-10-13 04:04:25] -rw-r--r-- 2 boincer umatlas    569684 Oct 13 02:53 input.tar.gz
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas 189467225 Oct 13 04:03 HITS.pool.root.1
[2025-10-13 04:04:25] -rw------- 1 boincer umatlas   1013760 Oct 13 04:04 result.tar.gz
04:04:27 (13068): run_atlas exited; CPU time 45219.858049
04:04:27 (13068): called boinc_finish(0)

</stderr_txt>
]]>

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