Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
09:31:46 (816667): wrapper (7.7.26015): starting
09:31:46 (816667): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 09:31:46] Arguments: --nthreads 8
[2025-10-13 09:31:46] Threads: 8
[2025-10-13 09:31:46] Checking for CVMFS
[2025-10-13 09:31:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:31:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:31:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:31:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:31:50] 2.11.5.0 4319 809 178320 151653 0 188 2689432 4194304 21195 130560 0 11278025 99.999 26990 340 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-13 09:31:50] CVMFS is ok
[2025-10-13 09:31:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:31:50] Checking for apptainer binary...
[2025-10-13 09:31:50] apptainer is not installed, using version from CVMFS
[2025-10-13 09:31:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:31:51] mikemint-desktop
[2025-10-13 09:31:51] apptainer works
[2025-10-13 09:31:51] Set ATHENA_PROC_NUMBER=8
[2025-10-13 09:31:51] Set ATHENA_CORE_NUMBER=8
[2025-10-13 09:31:51] Starting ATLAS job with PandaID=6840750293
[2025-10-13 09:31:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:04:59]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:04:59] 2025-10-13 10:03:58,727 | INFO     | monitor loop #622: job 0:6840750293 is in state 'finished'
[2025-10-13 12:04:59] 2025-10-13 10:03:58,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 12:04:59] 2025-10-13 10:03:59,181 | INFO     | time since job start (9023s) is within the limit (172800.0s)
[2025-10-13 12:04:59] 2025-10-13 10:04:00,217 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 12:04:59] 2025-10-13 10:04:00,272 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2362.625898437501
[2025-10-13 12:04:59] 2025-10-13 10:04:00,321 | INFO     | using path: /var/lib/boinc-client/slots/24/PanDA_Pilot-6840750293/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 12:04:59] 2025-10-13 10:04:00,322 | INFO     | extracted standard info from prmon json
[2025-10-13 12:04:59] 2025-10-13 10:04:00,322 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 12:04:59] 2025-10-13 10:04:00,322 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 12:04:59] 2025-10-13 10:04:00,322 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 12:04:59] 2025-10-13 10:04:00,322 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 12:04:59] 2025-10-13 10:04:00,325 | INFO     | fitting pss+swap vs Time
[2025-10-13 12:04:59] 2025-10-13 10:04:00,326 | INFO     | sum of square deviations: 925859220.0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,326 | INFO     | sum of deviations: 42465818560.0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,327 | INFO     | mean x: 1760345414.5
[2025-10-13 12:04:59] 2025-10-13 10:04:00,327 | INFO     | mean y: 2387432.722222222
[2025-10-13 12:04:59] 2025-10-13 10:04:00,327 | INFO     | -- intersect: -80738299013.19878
[2025-10-13 12:04:59] 2025-10-13 10:04:00,327 | INFO     | intersect: -80738299013.19878
[2025-10-13 12:04:59] 2025-10-13 10:04:00,327 | INFO     | chi2: 4.9657136747465405
[2025-10-13 12:04:59] 2025-10-13 10:04:00,327 | INFO     | sum of square deviations: 832722590.0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,328 | INFO     | sum of deviations: 50517206974.0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,328 | INFO     | mean x: 1760345262.0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,329 | INFO     | mean y: 2400163.4388489206
[2025-10-13 12:04:59] 2025-10-13 10:04:00,329 | INFO     | -- intersect: -106789137635.66693
[2025-10-13 12:04:59] 2025-10-13 10:04:00,329 | INFO     | intersect: -106789137635.66693
[2025-10-13 12:04:59] 2025-10-13 10:04:00,329 | INFO     | chi2: 4.1786681786519155
[2025-10-13 12:04:59] 2025-10-13 10:04:00,329 | INFO     | current chi2=4.1786681786519155 (change=15.849594794343377 %)
[2025-10-13 12:04:59] 2025-10-13 10:04:00,329 | INFO     | right removable region: 138
[2025-10-13 12:04:59] 2025-10-13 10:04:00,330 | INFO     | sum of square deviations: 832722590.0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,330 | INFO     | sum of deviations: -1317479158.9999971
[2025-10-13 12:04:59] 2025-10-13 10:04:00,331 | INFO     | mean x: 1760345567.0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,331 | INFO     | mean y: 2458943.4604316545
[2025-10-13 12:04:59] 2025-10-13 10:04:00,331 | INFO     | -- intersect: 2787562440.124949
[2025-10-13 12:04:59] 2025-10-13 10:04:00,331 | INFO     | intersect: 2787562440.124949
[2025-10-13 12:04:59] 2025-10-13 10:04:00,331 | INFO     | chi2: 1.1194879729151859
[2025-10-13 12:04:59] 2025-10-13 10:04:00,331 | INFO     | current chi2=1.1194879729151859 (change=77.45564794425391 %)
[2025-10-13 12:04:59] 2025-10-13 10:04:00,332 | INFO     | sum of square deviations: 746051197.5
[2025-10-13 12:04:59] 2025-10-13 10:04:00,332 | INFO     | sum of deviations: -11843817736.5
[2025-10-13 12:04:59] 2025-10-13 10:04:00,333 | INFO     | mean x: 1760345719.5
[2025-10-13 12:04:59] 2025-10-13 10:04:00,333 | INFO     | mean y: 2477328.1268656715
[2025-10-13 12:04:59] 2025-10-13 10:04:00,333 | INFO     | -- intersect: 27948567254.463257
[2025-10-13 12:04:59] 2025-10-13 10:04:00,333 | INFO     | intersect: 27948567254.463257
[2025-10-13 12:04:59] 2025-10-13 10:04:00,334 | INFO     | chi2: 0.8766965981823991
[2025-10-13 12:04:59] 2025-10-13 10:04:00,334 | INFO     | current chi2=0.8766965981823991 (change=21.687716224458363 %)
[2025-10-13 12:04:59] 2025-10-13 10:04:00,334 | INFO     | left removable region: 20
[2025-10-13 12:04:59] 2025-10-13 10:04:00,334 | INFO     | sum of square deviations: 509440249.5
[2025-10-13 12:04:59] 2025-10-13 10:04:00,335 | INFO     | sum of deviations: -2834381958.0000005
[2025-10-13 12:04:59] 2025-10-13 10:04:00,335 | INFO     | mean x: 1760345841.5
[2025-10-13 12:04:59] 2025-10-13 10:04:00,335 | INFO     | mean y: 2495164.9322033897
[2025-10-13 12:04:59] 2025-10-13 10:04:00,335 | INFO     | -- intersect: 9796563258.069647
[2025-10-13 12:04:59] 2025-10-13 10:04:00,335 | INFO     | intersect: 9796563258.069647
[2025-10-13 12:04:59] 2025-10-13 10:04:00,335 | INFO     | chi2: 0.006848202663527288
[2025-10-13 12:04:59] 2025-10-13 10:04:00,335 | INFO     | -- intersect: 9796563258.069647
[2025-10-13 12:04:59] 2025-10-13 10:04:00,335 | INFO     | current memory leak: -5.56 B/s (using 118 data points, chi2=0.01)
[2025-10-13 12:04:59] 2025-10-13 10:04:00,336 | INFO     | could have reported an average CPU frequency of 2363 MHz (8 samples)
[2025-10-13 12:04:59] 2025-10-13 10:04:00,336 | INFO     | ..............................
[2025-10-13 12:04:59] 2025-10-13 10:04:00,336 | INFO     | . Timing measurements:
[2025-10-13 12:04:59] 2025-10-13 10:04:00,336 | INFO     | . get job = 0 s
[2025-10-13 12:04:59] 2025-10-13 10:04:00,336 | INFO     | . initial setup = 4 s
[2025-10-13 12:04:59] 2025-10-13 10:04:00,337 | INFO     | . payload setup = 74 s
[2025-10-13 12:04:59] 2025-10-13 10:04:00,337 | INFO     | . stage-in = 0 s
[2025-10-13 12:04:59] 2025-10-13 10:04:00,337 | INFO     | . payload execution = 8779 s
[2025-10-13 12:04:59] 2025-10-13 10:04:00,341 | INFO     | . stage-out = 2 s
[2025-10-13 12:04:59] 2025-10-13 10:04:00,341 | INFO     | . log creation = 0 s
[2025-10-13 12:04:59] 2025-10-13 10:04:00,341 | INFO     | ..............................
[2025-10-13 12:04:59] 2025-10-13 10:04:00,619 | INFO     | 
[2025-10-13 12:04:59] 2025-10-13 10:04:00,620 | INFO     | job summary report
[2025-10-13 12:04:59] 2025-10-13 10:04:00,620 | INFO     | --------------------------------------------------
[2025-10-13 12:04:59] 2025-10-13 10:04:00,620 | INFO     | PanDA job id: 6840750293
[2025-10-13 12:04:59] 2025-10-13 10:04:00,620 | INFO     | task id: 46676269
[2025-10-13 12:04:59] 2025-10-13 10:04:00,620 | INFO     | errors: (none)
[2025-10-13 12:04:59] 2025-10-13 10:04:00,620 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 12:04:59] 2025-10-13 10:04:00,620 | INFO     | pilot state: finished 
[2025-10-13 12:04:59] 2025-10-13 10:04:00,620 | INFO     | transexitcode: 0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,620 | INFO     | exeerrorcode: 0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | exeerrordiag: 
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | exitcode: 0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | exitmsg: OK
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | cpuconsumptiontime: 44755 s
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | nevents: 400
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | neventsw: 0
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | pid: 858949
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | pgrp: 858949
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | corecount: 8
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | event service: False
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | sizes: {0: 2348694, 1: 2348893, 12: 2348893, 23: 2348921, 33: 2348949, 44: 2349005, 51: 2349423, 55: 2349451, 8858: 2377793, 8861: 2386807, 8864: 2386863, 8916: 23
[2025-10-13 12:04:59] 2025-10-13 10:04:00,621 | INFO     | --------------------------------------------------
[2025-10-13 12:04:59] 2025-10-13 10:04:00,622 | INFO     | 
[2025-10-13 12:04:59] 2025-10-13 10:04:00,622 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/24
[2025-10-13 12:04:59] 2025-10-13 10:04:00,757 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,758 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,758 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,758 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,759 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,759 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:04:59] 2025-10-13 10:04:00,759 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:04:59] 2025-10-13 10:04:00,760 | INFO     | job 6840750293 has completed (purged errors)
[2025-10-13 12:04:59] 2025-10-13 10:04:00,760 | INFO     | overall cleanup function is called
[2025-10-13 12:04:59] 2025-10-13 10:04:01,773 | INFO     | --- collectZombieJob: --- 10, [858949]
[2025-10-13 12:04:59] 2025-10-13 10:04:01,773 | INFO     | zombie collector waiting for pid 858949
[2025-10-13 12:04:59] 2025-10-13 10:04:01,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:04:59] 2025-10-13 10:04:01,773 | INFO     | collected zombie processes
[2025-10-13 12:04:59] 2025-10-13 10:04:01,773 | INFO     | will attempt to kill all subprocesses of pid=858949
[2025-10-13 12:04:59] 2025-10-13 10:04:02,794 | INFO     | process IDs to be killed: [858949] (in reverse order)
[2025-10-13 12:04:59] 2025-10-13 10:04:04,505 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:04:59] 2025-10-13 10:04:04,506 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:04:59] 2025-10-13 10:04:04,547 | INFO     | did not find any defunct processes belonging to 858949
[2025-10-13 12:04:59] 2025-10-13 10:04:04,582 | INFO     | did not find any defunct processes belonging to 858949
[2025-10-13 12:04:59] 2025-10-13 10:04:04,583 | INFO     | ready for new job
[2025-10-13 12:04:59] 2025-10-13 10:04:04,583 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:04:59] 2025-10-13 10:04:04,585 | INFO     | ***************************************
[2025-10-13 12:04:59] 2025-10-13 10:04:04,585 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:04:59] 2025-10-13 10:04:04,585 | INFO     | ***************************************
[2025-10-13 12:04:59] 2025-10-13 10:04:04,585 | INFO     | 
[2025-10-13 12:04:59] 2025-10-13 10:04:04,617 | INFO     | architecture information:
[2025-10-13 12:04:59] 2025-10-13 10:04:04,625 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:04:59] 2025-10-13 10:04:04,726 | INFO     | cat /etc/os-release:
[2025-10-13 12:04:59] NAME="CentOS Linux"
[2025-10-13 12:04:59] VERSION="7 (Core)"
[2025-10-13 12:04:59] ID="centos"
[2025-10-13 12:04:59] ID_LIKE="rhel fedora"
[2025-10-13 12:04:59] VERSION_ID="7"
[2025-10-13 12:04:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:04:59] ANSI_COLOR="0;31"
[2025-10-13 12:04:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:04:59] HOME_URL="https://www.centos.org/"
[2025-10-13 12:04:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:04:59] 
[2025-10-13 12:04:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:04:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:04:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:04:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:04:59] 
[2025-10-13 12:04:59] 2025-10-13 10:04:04,727 | INFO     | ***************************************
[2025-10-13 12:04:59] 2025-10-13 10:04:05,229 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/24
[2025-10-13 12:04:59] 2025-10-13 10:04:05,345 | INFO     | sufficient remaining disk space (194249752576 B)
[2025-10-13 12:04:59] 2025-10-13 10:04:05,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:04:59] 2025-10-13 10:04:05,346 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:04:59] 2025-10-13 10:04:05,346 | INFO     | update_server=False
[2025-10-13 12:04:59] 2025-10-13 10:04:05,346 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:04:59] 2025-10-13 10:04:05,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:04:59] 2025-10-13 10:04:05,347 | INFO     | aborting loop
[2025-10-13 12:04:59] 2025-10-13 10:04:05,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:04:59] 2025-10-13 10:04:05,777 | INFO     | all job control threads have been joined
[2025-10-13 12:04:59] 2025-10-13 10:04:05,961 | INFO     | all payload control threads have been joined
[2025-10-13 12:04:59] 2025-10-13 10:04:06,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:04:59] 2025-10-13 10:04:06,143 | INFO     | all data control threads have been joined
[2025-10-13 12:04:59] 2025-10-13 10:04:06,349 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:06,353 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:06,417 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:06,525 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:06,553 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:06,565 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:06,581 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:06,785 | INFO     | [job] control thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:06,965 | INFO     | [payload] control thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:07,025 | INFO     | [job] validate thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:07,145 | INFO     | [data] control thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:07,177 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:07,297 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:07,549 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:08,085 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:08,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:04:59] 2025-10-13 10:04:12,125 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:04:59] 2025-10-13 10:04:33,594 | INFO     | PID=837658 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 12:04:59] 2025-10-13 10:04:33,594 | INFO     | .. there are 25 such processes running
[2025-10-13 12:04:59] 2025-10-13 10:04:33,595 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:04:59] 2025-10-13 10:04:33,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:04:59] 2025-10-13 10:04:33,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:04:59] 2025-10-13 10:04:51,305 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:04:59] 2025-10-13 10:04:52,645 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140356024231744)>', '<ExcThread(monitor, started 140355722778368)>']
[2025-10-13 12:04:59] 2025-10-13 10:04:52,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:04:59] 2025-10-13 10:04:52,697 | INFO     | [monitor] control thread has ended
[2025-10-13 12:04:59] 2025-10-13 10:04:57,669 | INFO     | all workflow threads have been joined
[2025-10-13 12:04:59] 2025-10-13 10:04:57,669 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:04:59] 2025-10-13 10:04:57,669 | INFO     | traces error code: 0
[2025-10-13 12:04:59] 2025-10-13 10:04:57,670 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:04:59] 2025-10-13 10:04:57,947 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:04:59] 2025-10-13 10:04:57,962 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:04:59] 2025-10-13 10:04:58,009 [wrapper] pilotpid: 837658
[2025-10-13 12:04:59] 2025-10-13 10:04:58,045 [wrapper] Pilot exit status: 0
[2025-10-13 12:04:59] 2025-10-13 10:04:58,216 [wrapper] pandaids: 6840750293
[2025-10-13 12:04:59] 2025-10-13 10:04:58,758 [wrapper] cleanup supervisor_pilot 1599680 837659
[2025-10-13 12:04:59] 2025-10-13 10:04:58,798 [wrapper] Test setup, not cleaning
[2025-10-13 12:04:59] 2025-10-13 10:04:58,837 [wrapper] apfmon messages muted
[2025-10-13 12:04:59] 2025-10-13 10:04:58,881 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:04:59] 2025-10-13 10:04:58,917 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:04:59]  *** Error codes and diagnostics ***
[2025-10-13 12:04:59]     "exeErrorCode": 0,
[2025-10-13 12:04:59]     "exeErrorDiag": "",
[2025-10-13 12:04:59]     "pilotErrorCode": 0,
[2025-10-13 12:04:59]     "pilotErrorDiag": "",
[2025-10-13 12:04:59]  *** Listing of results directory ***
[2025-10-13 12:04:59] insgesamt 413528
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc    557409 Okt 12 23:12 pilot3.tar.gz
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc      5112 Okt 12 23:15 queuedata.json
[2025-10-13 12:04:59] -rwx------ 1 boinc boinc     36292 Okt 12 23:15 runpilot2-wrapper.sh
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc       100 Okt 13 09:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:04:59] -rwxr-xr-x 1 boinc boinc      7986 Okt 13 09:31 run_atlas
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc       105 Okt 13 09:31 job.xml
[2025-10-13 12:04:59] -rw-r--r-- 2 boinc boinc 223621129 Okt 13 09:31 EVNT.46676267._004776.pool.root.1
[2025-10-13 12:04:59] -rw-r--r-- 2 boinc boinc     15120 Okt 13 09:31 start_atlas.sh
[2025-10-13 12:04:59] drwxrwx--x 2 boinc boinc      4096 Okt 13 09:31 shared
[2025-10-13 12:04:59] -rw-r--r-- 2 boinc boinc    569681 Okt 13 09:31 input.tar.gz
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc         0 Okt 13 09:31 boinc_lockfile
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc      2550 Okt 13 09:31 pandaJob.out
[2025-10-13 12:04:59] -rw------- 1 boinc boinc    972849 Okt 13 09:33 agis_schedconf.cvmfs.json
[2025-10-13 12:04:59] -rw------- 1 boinc boinc   1560580 Okt 13 09:33 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:04:59] drwx------ 5 boinc boinc      4096 Okt 13 09:33 pilot3
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc      6674 Okt 13 11:41 init_data.xml
[2025-10-13 12:04:59] -rw------- 1 boinc boinc 192727999 Okt 13 12:01 HITS.46676269._089665.pool.root.1
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc       530 Okt 13 12:02 boinc_task_state.xml
[2025-10-13 12:04:59] -rw------- 1 boinc boinc      1040 Okt 13 12:02 memory_monitor_summary.json
[2025-10-13 12:04:59] -rw------- 1 boinc boinc    389330 Okt 13 12:03 log.46676269._089665.job.log.tgz.1
[2025-10-13 12:04:59] -rw------- 1 boinc boinc      7758 Okt 13 12:04 heartbeat.json
[2025-10-13 12:04:59] -rw------- 1 boinc boinc        95 Okt 13 12:04 pilot_heartbeat.json
[2025-10-13 12:04:59] -rw------- 1 boinc boinc      4832 Okt 13 12:04 pilotlog.txt
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc      8192 Okt 13 12:04 boinc_mmap_file
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc        27 Okt 13 12:04 wrapper_checkpoint.txt
[2025-10-13 12:04:59] -rw------- 1 boinc boinc   1207953 Okt 13 12:04 log.46676269._089665.job.log.1
[2025-10-13 12:04:59] -rw------- 1 boinc boinc       357 Okt 13 12:04 output.list
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc       620 Okt 13 12:04 runtime_log
[2025-10-13 12:04:59] -rw------- 1 boinc boinc   1617920 Okt 13 12:04 result.tar.gz
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc      8856 Okt 13 12:04 runtime_log.err
[2025-10-13 12:04:59] -rw------- 1 boinc boinc       664 Okt 13 12:04 MZ8NDmlaIS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm53UMDmYv9cwn.diag
[2025-10-13 12:04:59] -rw-r--r-- 1 boinc boinc     20896 Okt 13 12:04 stderr.txt
[2025-10-13 12:04:59] HITS file was successfully produced:
[2025-10-13 12:04:59] -rw------- 1 boinc boinc 192727999 Okt 13 12:01 shared/HITS.pool.root.1
[2025-10-13 12:04:59]  *** Contents of shared directory: ***
[2025-10-13 12:04:59] insgesamt 408760
[2025-10-13 12:04:59] -rw-r--r-- 2 boinc boinc 223621129 Okt 13 09:31 ATLAS.root_0
[2025-10-13 12:04:59] -rw-r--r-- 2 boinc boinc     15120 Okt 13 09:31 start_atlas.sh
[2025-10-13 12:04:59] -rw-r--r-- 2 boinc boinc    569681 Okt 13 09:31 input.tar.gz
[2025-10-13 12:04:59] -rw------- 1 boinc boinc 192727999 Okt 13 12:01 HITS.pool.root.1
[2025-10-13 12:04:59] -rw------- 1 boinc boinc   1617920 Okt 13 12:04 result.tar.gz
12:05:01 (816667): run_atlas exited; CPU time 45315.858781
12:05:01 (816667): called boinc_finish(0)

</stderr_txt>
]]>

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