Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:38:15 (19707): wrapper (7.7.26015): starting
02:38:15 (19707): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 02:38:15] Arguments: --nthreads 12
[2025-10-13 02:38:15] Threads: 12
[2025-10-13 02:38:15] Checking for CVMFS
[2025-10-13 02:38:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:38:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:38:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:38:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:38:15] 2.11.2.0 2914 223972 97524 151651 1 56 16636742 20275200 1 130560 1 109587290 99.983 13291427 12371 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 02:38:15] CVMFS is ok
[2025-10-13 02:38:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:38:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:38:15] Further information can be found at the LHC@home message board.
[2025-10-13 02:38:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:38:15] Checking for apptainer binary...
[2025-10-13 02:38:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:38:15] Running /usr/bin/apptainer --version
[2025-10-13 02:38:15] apptainer version 1.3.2-1.el7
[2025-10-13 02:38:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:38:16] c-205-5.aglt2.org
[2025-10-13 02:38:16] apptainer works
[2025-10-13 02:38:17] Set ATHENA_PROC_NUMBER=12
[2025-10-13 02:38:17] Set ATHENA_CORE_NUMBER=12
[2025-10-13 02:38:17] Starting ATLAS job with PandaID=6841125895
[2025-10-13 02:38:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:50:55]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:50:55]  status=None
[2025-10-13 03:50:55]  status_code=0
[2025-10-13 03:50:55]  storage_token=
[2025-10-13 03:50:55]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841125895/log.46676269._094668.job.log.tgz.1
[2025-10-13 03:50:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/c4/log.46676269._094668.job.log.tgz.1
[2025-10-13 03:50:55]  workdir=None
[2025-10-13 03:50:55] ]
[2025-10-13 03:50:55] 2025-10-13 07:50:15,941 | INFO     | transferring file log.46676269._094668.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841125895/log.46676269._094668.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 03:50:55] 2025-10-13 07:50:15,941 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841125895/log.46676269._094668.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._094668.job
[2025-10-13 03:50:55] 2025-10-13 07:50:15,965 | INFO     | adding to output.list: log.46676269._094668.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/c4/log.46676269._094668.job.log.tg
[2025-10-13 03:50:55] 2025-10-13 07:50:15,966 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 03:50:55] 2025-10-13 07:50:15,966 | INFO     | summary of transferred files:
[2025-10-13 03:50:55] 2025-10-13 07:50:15,966 | INFO     |  -- lfn=log.46676269._094668.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 03:50:55] 2025-10-13 07:50:15,966 | INFO     | stage-out finished correctly
[2025-10-13 03:50:55] 2025-10-13 07:50:16,512 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 03:50:55] 2025-10-13 07:50:16,701 | INFO     | PID=23378 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 03:50:55] 2025-10-13 07:50:17,701 | INFO     | time since job start (4305s) is within the limit (172800.0s)
[2025-10-13 03:50:55] 2025-10-13 07:50:17,802 | INFO     | monitor loop #322: job 0:6841125895 is in state 'finished'
[2025-10-13 03:50:55] 2025-10-13 07:50:17,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:50:55] 2025-10-13 07:50:18,483 | INFO     | job 6841125895 has state=finished
[2025-10-13 03:50:55] 2025-10-13 07:50:18,483 | INFO     | preparing for final server update for job 6841125895 in state='finished'
[2025-10-13 03:50:55] 2025-10-13 07:50:18,484 | INFO     | this job has now completed (state=finished)
[2025-10-13 03:50:55] 2025-10-13 07:50:18,484 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 03:50:55] 2025-10-13 07:50:18,484 | INFO     | log transfer has been attempted: DONE
[2025-10-13 03:50:55] 2025-10-13 07:50:18,484 | INFO     | job 6841125895 has finished - writing final server update
[2025-10-13 03:50:55] 2025-10-13 07:50:18,485 | INFO     | total number of processed events: 400 (read)
[2025-10-13 03:50:55] 2025-10-13 07:50:18,485 | INFO     | executing command: lscpu
[2025-10-13 03:50:55] 2025-10-13 07:50:18,512 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 03:50:55] 2025-10-13 07:50:19,707 | INFO     | time since job start (4307s) is within the limit (172800.0s)
[2025-10-13 03:50:55] 2025-10-13 07:50:20,305 | INFO     | monitor loop #323: job 0:6841125895 is in state 'finished'
[2025-10-13 03:50:55] 2025-10-13 07:50:20,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:50:55] 2025-10-13 07:50:21,713 | INFO     | time since job start (4309s) is within the limit (172800.0s)
[2025-10-13 03:50:55] 2025-10-13 07:50:22,808 | INFO     | monitor loop #324: job 0:6841125895 is in state 'finished'
[2025-10-13 03:50:55] 2025-10-13 07:50:22,809 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:50:55] 2025-10-13 07:50:23,372 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 03:50:55] 2025-10-13 07:50:23,376 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-10-13 03:50:55] 2025-10-13 07:50:23,378 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841125895/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:50:55] 2025-10-13 07:50:23,379 | INFO     | extracted standard info from prmon json
[2025-10-13 03:50:55] 2025-10-13 07:50:23,379 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:50:55] 2025-10-13 07:50:23,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:50:55] 2025-10-13 07:50:23,379 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:50:55] 2025-10-13 07:50:23,379 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:50:55] 2025-10-13 07:50:23,381 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:50:55] 2025-10-13 07:50:23,381 | INFO     | sum of square deviations: 81266640.0
[2025-10-13 03:50:55] 2025-10-13 07:50:23,381 | INFO     | sum of deviations: -3754678466.0
[2025-10-13 03:50:55] 2025-10-13 07:50:23,382 | INFO     | mean x: 1760339767.5
[2025-10-13 03:50:55] 2025-10-13 07:50:23,382 | INFO     | mean y: 2742488.6875
[2025-10-13 03:50:55] 2025-10-13 07:50:23,382 | INFO     | -- intersect: 81333899010.91724
[2025-10-13 03:50:55] 2025-10-13 07:50:23,382 | INFO     | intersect: 81333899010.91724
[2025-10-13 03:50:55] 2025-10-13 07:50:23,382 | INFO     | chi2: 0.016052457172420737
[2025-10-13 03:50:55] 2025-10-13 07:50:23,382 | INFO     | -- intersect: 81333899010.91724
[2025-10-13 03:50:55] 2025-10-13 07:50:23,382 | INFO     | current memory leak: -46.20 B/s (using 64 data points, chi2=0.02)
[2025-10-13 03:50:55] 2025-10-13 07:50:23,383 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-10-13 03:50:55] 2025-10-13 07:50:23,383 | INFO     | ..............................
[2025-10-13 03:50:55] 2025-10-13 07:50:23,383 | INFO     | . Timing measurements:
[2025-10-13 03:50:55] 2025-10-13 07:50:23,383 | INFO     | . get job = 0 s
[2025-10-13 03:50:55] 2025-10-13 07:50:23,383 | INFO     | . initial setup = 2 s
[2025-10-13 03:50:55] 2025-10-13 07:50:23,383 | INFO     | . payload setup = 7 s
[2025-10-13 03:50:55] 2025-10-13 07:50:23,383 | INFO     | . stage-in = 0 s
[2025-10-13 03:50:55] 2025-10-13 07:50:23,383 | INFO     | . payload execution = 4275 s
[2025-10-13 03:50:55] 2025-10-13 07:50:23,383 | INFO     | . stage-out = 0 s
[2025-10-13 03:50:55] 2025-10-13 07:50:23,384 | INFO     | . log creation = 0 s
[2025-10-13 03:50:55] 2025-10-13 07:50:23,384 | INFO     | ..............................
[2025-10-13 03:50:55] 2025-10-13 07:50:23,465 | INFO     | 
[2025-10-13 03:50:55] 2025-10-13 07:50:23,466 | INFO     | job summary report
[2025-10-13 03:50:55] 2025-10-13 07:50:23,466 | INFO     | --------------------------------------------------
[2025-10-13 03:50:55] 2025-10-13 07:50:23,466 | INFO     | PanDA job id: 6841125895
[2025-10-13 03:50:55] 2025-10-13 07:50:23,466 | INFO     | task id: 46676269
[2025-10-13 03:50:55] 2025-10-13 07:50:23,466 | INFO     | errors: (none)
[2025-10-13 03:50:55] 2025-10-13 07:50:23,466 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:50:55] 2025-10-13 07:50:23,467 | INFO     | pilot state: finished 
[2025-10-13 03:50:55] 2025-10-13 07:50:23,467 | INFO     | transexitcode: 0
[2025-10-13 03:50:55] 2025-10-13 07:50:23,467 | INFO     | exeerrorcode: 0
[2025-10-13 03:50:55] 2025-10-13 07:50:23,467 | INFO     | exeerrordiag: 
[2025-10-13 03:50:55] 2025-10-13 07:50:23,467 | INFO     | exitcode: 0
[2025-10-13 03:50:55] 2025-10-13 07:50:23,467 | INFO     | exitmsg: OK
[2025-10-13 03:50:55] 2025-10-13 07:50:23,467 | INFO     | cpuconsumptiontime: 44646 s
[2025-10-13 03:50:55] 2025-10-13 07:50:23,467 | INFO     | nevents: 400
[2025-10-13 03:50:55] 2025-10-13 07:50:23,468 | INFO     | neventsw: 0
[2025-10-13 03:50:55] 2025-10-13 07:50:23,468 | INFO     | pid: 29838
[2025-10-13 03:50:55] 2025-10-13 07:50:23,468 | INFO     | pgrp: 29838
[2025-10-13 03:50:55] 2025-10-13 07:50:23,468 | INFO     | corecount: 12
[2025-10-13 03:50:55] 2025-10-13 07:50:23,468 | INFO     | event service: False
[2025-10-13 03:50:55] 2025-10-13 07:50:23,468 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4286: 2375195, 4287: 2384193, 4288: 2384249, 4295: 2384571}
[2025-10-13 03:50:55] 2025-10-13 07:50:23,468 | INFO     | --------------------------------------------------
[2025-10-13 03:50:55] 2025-10-13 07:50:23,468 | INFO     | 
[2025-10-13 03:50:55] 2025-10-13 07:50:23,468 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 03:50:55] 2025-10-13 07:50:23,492 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,492 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,492 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,492 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,493 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,493 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,493 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,493 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,493 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,495 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:50:55] 2025-10-13 07:50:23,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,495 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:50:55] 2025-10-13 07:50:23,495 | INFO     | job 6841125895 has completed (purged errors)
[2025-10-13 03:50:55] 2025-10-13 07:50:23,496 | INFO     | overall cleanup function is called
[2025-10-13 03:50:55] 2025-10-13 07:50:24,504 | INFO     | --- collectZombieJob: --- 10, [29838]
[2025-10-13 03:50:55] 2025-10-13 07:50:24,504 | INFO     | zombie collector waiting for pid 29838
[2025-10-13 03:50:55] 2025-10-13 07:50:24,504 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:50:55] 2025-10-13 07:50:24,504 | INFO     | collected zombie processes
[2025-10-13 03:50:55] 2025-10-13 07:50:24,504 | INFO     | will attempt to kill all subprocesses of pid=29838
[2025-10-13 03:50:55] 2025-10-13 07:50:24,595 | INFO     | process IDs to be killed: [29838] (in reverse order)
[2025-10-13 03:50:55] 2025-10-13 07:50:24,649 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:50:55] 2025-10-13 07:50:24,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:50:55] 2025-10-13 07:50:24,654 | INFO     | did not find any defunct processes belonging to 29838
[2025-10-13 03:50:55] 2025-10-13 07:50:24,657 | INFO     | did not find any defunct processes belonging to 29838
[2025-10-13 03:50:55] 2025-10-13 07:50:24,657 | INFO     | ready for new job
[2025-10-13 03:50:55] 2025-10-13 07:50:24,658 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:50:55] 2025-10-13 07:50:24,659 | INFO     | ***************************************
[2025-10-13 03:50:55] 2025-10-13 07:50:24,659 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:50:55] 2025-10-13 07:50:24,659 | INFO     | ***************************************
[2025-10-13 03:50:55] 2025-10-13 07:50:24,659 | INFO     | 
[2025-10-13 03:50:55] 2025-10-13 07:50:24,660 | INFO     | architecture information:
[2025-10-13 03:50:55] 2025-10-13 07:50:24,660 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:50:55] 2025-10-13 07:50:24,677 | INFO     | cat /etc/os-release:
[2025-10-13 03:50:55] NAME="CentOS Linux"
[2025-10-13 03:50:55] VERSION="7 (Core)"
[2025-10-13 03:50:55] ID="centos"
[2025-10-13 03:50:55] ID_LIKE="rhel fedora"
[2025-10-13 03:50:55] VERSION_ID="7"
[2025-10-13 03:50:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:50:55] ANSI_COLOR="0;31"
[2025-10-13 03:50:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:50:55] HOME_URL="https://www.centos.org/"
[2025-10-13 03:50:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:50:55] 
[2025-10-13 03:50:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:50:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:50:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:50:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:50:55] 
[2025-10-13 03:50:55] 2025-10-13 07:50:24,678 | INFO     | ***************************************
[2025-10-13 03:50:55] 2025-10-13 07:50:25,181 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 03:50:55] 2025-10-13 07:50:25,198 | INFO     | sufficient remaining disk space (29362225152 B)
[2025-10-13 03:50:55] 2025-10-13 07:50:25,215 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:50:55] 2025-10-13 07:50:25,215 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:50:55] 2025-10-13 07:50:25,215 | INFO     | update_server=False
[2025-10-13 03:50:55] 2025-10-13 07:50:25,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:50:55] 2025-10-13 07:50:25,215 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:50:55] 2025-10-13 07:50:25,312 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 03:50:55] 2025-10-13 07:50:25,312 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 03:50:55] 2025-10-13 07:50:25,312 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:50:55] 2025-10-13 07:50:25,313 | INFO     | will abort loop
[2025-10-13 03:50:55] 2025-10-13 07:50:25,683 | INFO     | all payload control threads have been joined
[2025-10-13 03:50:55] 2025-10-13 07:50:25,778 | INFO     | all data control threads have been joined
[2025-10-13 03:50:55] 2025-10-13 07:50:25,846 | INFO     | all job control threads have been joined
[2025-10-13 03:50:55] 2025-10-13 07:50:26,221 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:26,221 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:26,296 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:26,318 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:26,583 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:50:55] 2025-10-13 07:50:26,658 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:26,689 | INFO     | [payload] control thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:26,745 | INFO     | [job] validate thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:26,784 | INFO     | [data] control thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:26,852 | INFO     | [job] control thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:27,101 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:50:55] 2025-10-13 07:50:27,236 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:27,570 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:27,592 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:27,682 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:28,587 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:31,107 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:35,360 | INFO     | job.realtimelogging is not enabled
[2025-10-13 03:50:55] 2025-10-13 07:50:36,365 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:50:55] 2025-10-13 07:50:38,460 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:50:55] 2025-10-13 07:50:40,037 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472488466240)>', '<ExcThread(monitor, started 140472030832384)>']
[2025-10-13 03:50:55] 2025-10-13 07:50:45,050 | INFO     | all workflow threads have been joined
[2025-10-13 03:50:55] 2025-10-13 07:50:45,050 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:50:55] 2025-10-13 07:50:45,051 | INFO     | traces error code: 0
[2025-10-13 03:50:55] 2025-10-13 07:50:45,051 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:50:55] 2025-10-13 07:50:54,916 | INFO     | PID=23378 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 03:50:55] 2025-10-13 07:50:54,917 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:50:55] 2025-10-13 07:50:54,917 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:50:55] 2025-10-13 07:50:54,917 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:50:55] 2025-10-13 07:50:54,917 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:50:55] 2025-10-13 07:50:54,917 | INFO     | [monitor] control thread has ended
[2025-10-13 03:50:55] 2025-10-13 07:50:55,015 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:50:55] 2025-10-13 07:50:55,019 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:50:55] 2025-10-13 07:50:55,022 [wrapper] pilotpid: 23378
[2025-10-13 03:50:55] 2025-10-13 07:50:55,026 [wrapper] Pilot exit status: 0
[2025-10-13 03:50:55] 2025-10-13 07:50:55,040 [wrapper] pandaids: 6841125895
[2025-10-13 03:50:55] 2025-10-13 07:50:55,081 [wrapper] cleanup supervisor_pilot  7856 23379
[2025-10-13 03:50:55] 2025-10-13 07:50:55,085 [wrapper] Test setup, not cleaning
[2025-10-13 03:50:55] 2025-10-13 07:50:55,089 [wrapper] apfmon messages muted
[2025-10-13 03:50:55] 2025-10-13 07:50:55,093 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:50:55] 2025-10-13 07:50:55,098 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:50:55]  *** Error codes and diagnostics ***
[2025-10-13 03:50:55]     "exeErrorCode": 0,
[2025-10-13 03:50:55]     "exeErrorDiag": "",
[2025-10-13 03:50:55]     "pilotErrorCode": 0,
[2025-10-13 03:50:55]     "pilotErrorDiag": "",
[2025-10-13 03:50:55]  *** Listing of results directory ***
[2025-10-13 03:50:55] total 410680
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 22:12 queuedata.json
[2025-10-13 03:50:55] -rwx------ 1 boincer umatlas     36292 Oct 12 22:13 runpilot2-wrapper.sh
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas       100 Oct 13 02:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:50:55] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 02:38 run_atlas
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas       105 Oct 13 02:38 job.xml
[2025-10-13 03:50:55] -rw-r--r-- 2 boincer umatlas 224321410 Oct 13 02:38 EVNT.46676267._004356.pool.root.1
[2025-10-13 03:50:55] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 02:38 start_atlas.sh
[2025-10-13 03:50:55] drwxrwx--x 2 boincer umatlas      4096 Oct 13 02:38 shared
[2025-10-13 03:50:55] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 02:38 input.tar.gz
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas         0 Oct 13 02:38 boinc_lockfile
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 02:38 pandaJob.out
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas    973230 Oct 13 02:38 agis_schedconf.cvmfs.json
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas   1560580 Oct 13 02:38 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:50:55] drwx------ 5 boincer umatlas      4096 Oct 13 02:38 pilot3
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 03:48 init_data.xml
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas 190315862 Oct 13 03:49 HITS.46676269._094668.pool.root.1
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas       529 Oct 13 03:49 boinc_task_state.xml
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas      1063 Oct 13 03:50 memory_monitor_summary.json
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas    373060 Oct 13 03:50 log.46676269._094668.job.log.tgz.1
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas      7850 Oct 13 03:50 heartbeat.json
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas        27 Oct 13 03:50 wrapper_checkpoint.txt
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 03:50 boinc_mmap_file
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas        95 Oct 13 03:50 pilot_heartbeat.json
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas       745 Oct 13 03:50 pilotlog.txt
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas    628662 Oct 13 03:50 log.46676269._094668.job.log.1
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas       357 Oct 13 03:50 output.list
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas       620 Oct 13 03:50 runtime_log
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas   1024000 Oct 13 03:50 result.tar.gz
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas      8700 Oct 13 03:50 runtime_log.err
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas       658 Oct 13 03:50 2iSLDmKFNS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmuUVMDmoymMPn.diag
[2025-10-13 03:50:55] -rw-r--r-- 1 boincer umatlas     22050 Oct 13 03:50 stderr.txt
[2025-10-13 03:50:55] HITS file was successfully produced:
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas 190315862 Oct 13 03:49 shared/HITS.pool.root.1
[2025-10-13 03:50:55]  *** Contents of shared directory: ***
[2025-10-13 03:50:55] total 406500
[2025-10-13 03:50:55] -rw-r--r-- 2 boincer umatlas 224321410 Oct 13 02:38 ATLAS.root_0
[2025-10-13 03:50:55] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 02:38 start_atlas.sh
[2025-10-13 03:50:55] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 02:38 input.tar.gz
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas 190315862 Oct 13 03:49 HITS.pool.root.1
[2025-10-13 03:50:55] -rw------- 1 boincer umatlas   1024000 Oct 13 03:50 result.tar.gz
03:50:56 (19707): run_atlas exited; CPU time 44623.396288
03:50:56 (19707): called boinc_finish(0)

</stderr_txt>
]]>

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