Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:39:03 (20340): wrapper (7.7.26015): starting
02:39:03 (20340): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 02:39:03] Arguments: --nthreads 8
[2025-10-13 02:39:03] Threads: 8
[2025-10-13 02:39:03] Checking for CVMFS
[2025-10-13 02:39:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:39:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:39:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:39:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:39:03] 2.11.2.0 4697 53955 119964 151651 3 57 13593322 18432001 1833 130560 0 50262446 99.976 2432425 39565 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 02:39:03] CVMFS is ok
[2025-10-13 02:39:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:39:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:39:03] Further information can be found at the LHC@home message board.
[2025-10-13 02:39:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:39:03] Checking for apptainer binary...
[2025-10-13 02:39:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:39:03] Running /usr/bin/apptainer --version
[2025-10-13 02:39:03] apptainer version 1.3.2-1.el7
[2025-10-13 02:39:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:39:04] c-206-21.aglt2.org
[2025-10-13 02:39:04] apptainer works
[2025-10-13 02:39:04] Set ATHENA_PROC_NUMBER=8
[2025-10-13 02:39:04] Set ATHENA_CORE_NUMBER=8
[2025-10-13 02:39:04] Starting ATLAS job with PandaID=6841125896
[2025-10-13 02:39:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:29:54 (22631): wrapper (7.7.26015): starting
05:29:54 (22631): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 05:29:54] Arguments: --nthreads 8
[2025-10-13 05:29:54] Threads: 8
[2025-10-13 05:29:54] This job has been restarted, cleaning up previous attempt
[2025-10-13 05:29:54] Checking for CVMFS
[2025-10-13 05:29:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:29:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:29:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:29:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:29:55] 2.11.2.0 4697 54126 119068 151656 1 11 13608320 18432001 1 130560 0 50468497 99.976 2438765 39554 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 05:29:55] CVMFS is ok
[2025-10-13 05:29:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:29:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:29:55] Further information can be found at the LHC@home message board.
[2025-10-13 05:29:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:29:55] Checking for apptainer binary...
[2025-10-13 05:29:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:29:55] Running /usr/bin/apptainer --version
[2025-10-13 05:29:55] apptainer version 1.3.2-1.el7
[2025-10-13 05:29:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:29:56] c-206-21.aglt2.org
[2025-10-13 05:29:56] apptainer works
[2025-10-13 05:29:56] Set ATHENA_PROC_NUMBER=8
[2025-10-13 05:29:56] Set ATHENA_CORE_NUMBER=8
[2025-10-13 05:29:56] Starting ATLAS job with PandaID=6841125896
[2025-10-13 05:29:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:28:40]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:28:40] 2025-10-13 12:28:07,088 | INFO     | time since job start (10679s) is within the limit (172800.0s)
[2025-10-13 08:28:40] 2025-10-13 12:28:07,274 | INFO     | monitor loop #767: job 0:6841125896 is in state 'finished'
[2025-10-13 08:28:40] 2025-10-13 12:28:07,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:28:40] 2025-10-13 12:28:08,072 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 08:28:40] 2025-10-13 12:28:08,078 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2106.25
[2025-10-13 08:28:40] 2025-10-13 12:28:08,083 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841125896/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:28:40] 2025-10-13 12:28:08,084 | INFO     | extracted standard info from prmon json
[2025-10-13 08:28:40] 2025-10-13 12:28:08,084 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 08:28:40] 2025-10-13 12:28:08,084 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:28:40] 2025-10-13 12:28:08,085 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:28:40] 2025-10-13 12:28:08,085 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:28:40] 2025-10-13 12:28:08,090 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:28:40] 2025-10-13 12:28:08,091 | INFO     | sum of square deviations: 1661798600.0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,092 | INFO     | sum of deviations: 17776464876.999992
[2025-10-13 08:28:40] 2025-10-13 12:28:08,092 | INFO     | mean x: 1760353142.0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,093 | INFO     | mean y: 2471065.72
[2025-10-13 08:28:40] 2025-10-13 12:28:08,093 | INFO     | -- intersect: -18828243919.765953
[2025-10-13 08:28:40] 2025-10-13 12:28:08,093 | INFO     | intersect: -18828243919.765953
[2025-10-13 08:28:40] 2025-10-13 12:28:08,093 | INFO     | chi2: 1.3298476141787332
[2025-10-13 08:28:40] 2025-10-13 12:28:08,094 | INFO     | sum of square deviations: 1523386702.5
[2025-10-13 08:28:40] 2025-10-13 12:28:08,095 | INFO     | sum of deviations: 17114387682.499996
[2025-10-13 08:28:40] 2025-10-13 12:28:08,095 | INFO     | mean x: 1760352989.5
[2025-10-13 08:28:40] 2025-10-13 12:28:08,096 | INFO     | mean y: 2470340.464705882
[2025-10-13 08:28:40] 2025-10-13 12:28:08,096 | INFO     | -- intersect: -19774099502.838654
[2025-10-13 08:28:40] 2025-10-13 12:28:08,096 | INFO     | intersect: -19774099502.838654
[2025-10-13 08:28:40] 2025-10-13 12:28:08,096 | INFO     | chi2: 1.330745213374152
[2025-10-13 08:28:40] 2025-10-13 12:28:08,097 | INFO     | current chi2=1.330745213374152 (change=-0.06749639476347738 %)
[2025-10-13 08:28:40] 2025-10-13 12:28:08,097 | INFO     | right removable region: 169
[2025-10-13 08:28:40] 2025-10-13 12:28:08,097 | INFO     | sum of square deviations: 1523386702.5
[2025-10-13 08:28:40] 2025-10-13 12:28:08,099 | INFO     | sum of deviations: -7448940335.999998
[2025-10-13 08:28:40] 2025-10-13 12:28:08,099 | INFO     | mean x: 1760353294.5
[2025-10-13 08:28:40] 2025-10-13 12:28:08,099 | INFO     | mean y: 2498521.1529411767
[2025-10-13 08:28:40] 2025-10-13 12:28:08,099 | INFO     | -- intersect: 8610140060.554873
[2025-10-13 08:28:40] 2025-10-13 12:28:08,100 | INFO     | intersect: 8610140060.554873
[2025-10-13 08:28:40] 2025-10-13 12:28:08,100 | INFO     | chi2: 0.015389573994916054
[2025-10-13 08:28:40] 2025-10-13 12:28:08,100 | INFO     | current chi2=0.015389573994916054 (change=98.84275658121776 %)
[2025-10-13 08:28:40] 2025-10-13 12:28:08,101 | INFO     | sum of square deviations: 1392881930.0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,102 | INFO     | sum of deviations: -7026170625.0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,102 | INFO     | mean x: 1760353447.0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,102 | INFO     | mean y: 2498019.654545455
[2025-10-13 08:28:40] 2025-10-13 12:28:08,103 | INFO     | -- intersect: 8882320072.431765
[2025-10-13 08:28:40] 2025-10-13 12:28:08,103 | INFO     | intersect: 8882320072.431765
[2025-10-13 08:28:40] 2025-10-13 12:28:08,103 | INFO     | chi2: 0.01513360976001203
[2025-10-13 08:28:40] 2025-10-13 12:28:08,103 | INFO     | current chi2=0.01513360976001203 (change=1.6632314512967155 %)
[2025-10-13 08:28:40] 2025-10-13 12:28:08,104 | INFO     | left removable region: 20
[2025-10-13 08:28:40] 2025-10-13 12:28:08,104 | INFO     | sum of square deviations: 1025693650.0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,105 | INFO     | sum of deviations: -4401812459.999999
[2025-10-13 08:28:40] 2025-10-13 12:28:08,105 | INFO     | mean x: 1760353569.0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,105 | INFO     | mean y: 2494637.489932886
[2025-10-13 08:28:40] 2025-10-13 12:28:08,106 | INFO     | -- intersect: 7557134635.53386
[2025-10-13 08:28:40] 2025-10-13 12:28:08,106 | INFO     | intersect: 7557134635.53386
[2025-10-13 08:28:40] 2025-10-13 12:28:08,106 | INFO     | chi2: 0.012979941684285448
[2025-10-13 08:28:40] 2025-10-13 12:28:08,106 | INFO     | -- intersect: 7557134635.53386
[2025-10-13 08:28:40] 2025-10-13 12:28:08,107 | INFO     | current memory leak: -4.29 B/s (using 149 data points, chi2=0.01)
[2025-10-13 08:28:40] 2025-10-13 12:28:08,107 | INFO     | could have reported an average CPU frequency of 2326 MHz (9 samples)
[2025-10-13 08:28:40] 2025-10-13 12:28:08,107 | INFO     | ..............................
[2025-10-13 08:28:40] 2025-10-13 12:28:08,108 | INFO     | . Timing measurements:
[2025-10-13 08:28:40] 2025-10-13 12:28:08,108 | INFO     | . get job = 0 s
[2025-10-13 08:28:40] 2025-10-13 12:28:08,108 | INFO     | . initial setup = 1 s
[2025-10-13 08:28:40] 2025-10-13 12:28:08,108 | INFO     | . payload setup = 6 s
[2025-10-13 08:28:40] 2025-10-13 12:28:08,108 | INFO     | . stage-in = 0 s
[2025-10-13 08:28:40] 2025-10-13 12:28:08,108 | INFO     | . payload execution = 10643 s
[2025-10-13 08:28:40] 2025-10-13 12:28:08,109 | INFO     | . stage-out = 2 s
[2025-10-13 08:28:40] 2025-10-13 12:28:08,109 | INFO     | . log creation = 0 s
[2025-10-13 08:28:40] 2025-10-13 12:28:08,109 | INFO     | ..............................
[2025-10-13 08:28:40] 2025-10-13 12:28:08,618 | INFO     | 
[2025-10-13 08:28:40] 2025-10-13 12:28:08,619 | INFO     | job summary report
[2025-10-13 08:28:40] 2025-10-13 12:28:08,619 | INFO     | --------------------------------------------------
[2025-10-13 08:28:40] 2025-10-13 12:28:08,619 | INFO     | PanDA job id: 6841125896
[2025-10-13 08:28:40] 2025-10-13 12:28:08,619 | INFO     | task id: 46676269
[2025-10-13 08:28:40] 2025-10-13 12:28:08,619 | INFO     | errors: (none)
[2025-10-13 08:28:40] 2025-10-13 12:28:08,619 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:28:40] 2025-10-13 12:28:08,620 | INFO     | pilot state: finished 
[2025-10-13 08:28:40] 2025-10-13 12:28:08,620 | INFO     | transexitcode: 0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,620 | INFO     | exeerrorcode: 0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,620 | INFO     | exeerrordiag: 
[2025-10-13 08:28:40] 2025-10-13 12:28:08,620 | INFO     | exitcode: 0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,620 | INFO     | exitmsg: OK
[2025-10-13 08:28:40] 2025-10-13 12:28:08,621 | INFO     | cpuconsumptiontime: 80825 s
[2025-10-13 08:28:40] 2025-10-13 12:28:08,621 | INFO     | nevents: 400
[2025-10-13 08:28:40] 2025-10-13 12:28:08,621 | INFO     | neventsw: 0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,621 | INFO     | pid: 22488
[2025-10-13 08:28:40] 2025-10-13 12:28:08,621 | INFO     | pgrp: 22488
[2025-10-13 08:28:40] 2025-10-13 12:28:08,621 | INFO     | corecount: 8
[2025-10-13 08:28:40] 2025-10-13 12:28:08,622 | INFO     | event service: False
[2025-10-13 08:28:40] 2025-10-13 12:28:08,622 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 12: 2349203, 10653: 2377938, 10654: 2377937, 10657: 2387119, 10659: 2387175, 10664: 2387433}
[2025-10-13 08:28:40] 2025-10-13 12:28:08,622 | INFO     | --------------------------------------------------
[2025-10-13 08:28:40] 2025-10-13 12:28:08,622 | INFO     | 
[2025-10-13 08:28:40] 2025-10-13 12:28:08,622 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 08:28:40] 2025-10-13 12:28:08,639 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,639 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,639 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,639 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,640 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,640 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,640 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,640 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,640 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,640 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,640 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,640 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,640 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,641 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,641 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:28:40] 2025-10-13 12:28:08,641 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,641 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:28:40] 2025-10-13 12:28:08,641 | INFO     | job 6841125896 has completed (purged errors)
[2025-10-13 08:28:40] 2025-10-13 12:28:08,642 | INFO     | overall cleanup function is called
[2025-10-13 08:28:40] 2025-10-13 12:28:09,645 | INFO     | --- collectZombieJob: --- 10, [22488]
[2025-10-13 08:28:40] 2025-10-13 12:28:09,646 | INFO     | zombie collector waiting for pid 22488
[2025-10-13 08:28:40] 2025-10-13 12:28:09,646 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:28:40] 2025-10-13 12:28:09,646 | INFO     | collected zombie processes
[2025-10-13 08:28:40] 2025-10-13 12:28:09,646 | INFO     | will attempt to kill all subprocesses of pid=22488
[2025-10-13 08:28:40] 2025-10-13 12:28:09,765 | INFO     | process IDs to be killed: [22488] (in reverse order)
[2025-10-13 08:28:40] 2025-10-13 12:28:09,806 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:28:40] 2025-10-13 12:28:09,807 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:28:40] 2025-10-13 12:28:09,810 | INFO     | did not find any defunct processes belonging to 22488
[2025-10-13 08:28:40] 2025-10-13 12:28:09,812 | INFO     | did not find any defunct processes belonging to 22488
[2025-10-13 08:28:40] 2025-10-13 12:28:09,812 | INFO     | ready for new job
[2025-10-13 08:28:40] 2025-10-13 12:28:09,813 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:28:40] 2025-10-13 12:28:09,814 | INFO     | ***************************************
[2025-10-13 08:28:40] 2025-10-13 12:28:09,814 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:28:40] 2025-10-13 12:28:09,814 | INFO     | ***************************************
[2025-10-13 08:28:40] 2025-10-13 12:28:09,814 | INFO     | 
[2025-10-13 08:28:40] 2025-10-13 12:28:09,815 | INFO     | architecture information:
[2025-10-13 08:28:40] 2025-10-13 12:28:09,816 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:28:40] 2025-10-13 12:28:09,828 | INFO     | cat /etc/os-release:
[2025-10-13 08:28:40] NAME="CentOS Linux"
[2025-10-13 08:28:40] VERSION="7 (Core)"
[2025-10-13 08:28:40] ID="centos"
[2025-10-13 08:28:40] ID_LIKE="rhel fedora"
[2025-10-13 08:28:40] VERSION_ID="7"
[2025-10-13 08:28:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:28:40] ANSI_COLOR="0;31"
[2025-10-13 08:28:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:28:40] HOME_URL="https://www.centos.org/"
[2025-10-13 08:28:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:28:40] 
[2025-10-13 08:28:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:28:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:28:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:28:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:28:40] 
[2025-10-13 08:28:40] 2025-10-13 12:28:09,829 | INFO     | ***************************************
[2025-10-13 08:28:40] 2025-10-13 12:28:10,332 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 08:28:40] 2025-10-13 12:28:10,343 | INFO     | sufficient remaining disk space (28009562112 B)
[2025-10-13 08:28:40] 2025-10-13 12:28:10,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:28:40] 2025-10-13 12:28:10,343 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:28:40] 2025-10-13 12:28:10,343 | INFO     | update_server=False
[2025-10-13 08:28:40] 2025-10-13 12:28:10,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:28:40] 2025-10-13 12:28:10,421 | INFO     | all payload control threads have been joined
[2025-10-13 08:28:40] 2025-10-13 12:28:10,446 | INFO     | all data control threads have been joined
[2025-10-13 08:28:40] 2025-10-13 12:28:10,782 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:28:40] 2025-10-13 12:28:10,782 | INFO     | aborting loop
[2025-10-13 08:28:40] 2025-10-13 12:28:11,038 | INFO     | all job control threads have been joined
[2025-10-13 08:28:40] 2025-10-13 12:28:11,349 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:11,351 | INFO     | [job] validate thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:11,427 | INFO     | [payload] control thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:11,452 | INFO     | [data] control thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:11,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:28:40] 2025-10-13 12:28:11,543 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:11,784 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:11,785 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:11,786 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:12,026 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:12,044 | INFO     | [job] control thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:12,340 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:12,398 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:12,939 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:13,023 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:28:40] 2025-10-13 12:28:13,244 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:28:40] 2025-10-13 12:28:13,514 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:14,250 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:17,029 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:28:40] 2025-10-13 12:28:25,140 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:28:40] 2025-10-13 12:28:25,808 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140149993453376)>', '<ExcThread(monitor, started 140148742289152)>']
[2025-10-13 08:28:40] 2025-10-13 12:28:30,833 | INFO     | all workflow threads have been joined
[2025-10-13 08:28:40] 2025-10-13 12:28:30,834 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:28:40] 2025-10-13 12:28:30,834 | INFO     | traces error code: 0
[2025-10-13 08:28:40] 2025-10-13 12:28:30,834 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:28:40] 2025-10-13 12:28:40,312 | INFO     | PID=2488 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 08:28:40] 2025-10-13 12:28:40,312 | INFO     | .. there are 3 such processes running
[2025-10-13 08:28:40] 2025-10-13 12:28:40,313 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:28:40] 2025-10-13 12:28:40,313 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:28:40] 2025-10-13 12:28:40,313 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:28:40] 2025-10-13 12:28:40,313 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:28:40] 2025-10-13 12:28:40,313 | INFO     | [monitor] control thread has ended
[2025-10-13 08:28:40] 2025-10-13 12:28:40,400 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:28:40] 2025-10-13 12:28:40,402 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:28:40] 2025-10-13 12:28:40,405 [wrapper] pilotpid: 2488
[2025-10-13 08:28:40] 2025-10-13 12:28:40,407 [wrapper] Pilot exit status: 0
[2025-10-13 08:28:40] 2025-10-13 12:28:40,417 [wrapper] pandaids: 6841125896 6841125896
[2025-10-13 08:28:40] 2025-10-13 12:28:40,447 [wrapper] cleanup supervisor_pilot  2844 2490
[2025-10-13 08:28:40] 2025-10-13 12:28:40,450 [wrapper] Test setup, not cleaning
[2025-10-13 08:28:40] 2025-10-13 12:28:40,453 [wrapper] apfmon messages muted
[2025-10-13 08:28:40] 2025-10-13 12:28:40,455 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:28:40] 2025-10-13 12:28:40,458 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:28:40]  *** Error codes and diagnostics ***
[2025-10-13 08:28:40]     "exeErrorCode": 0,
[2025-10-13 08:28:40]     "exeErrorDiag": "",
[2025-10-13 08:28:40]     "pilotErrorCode": 0,
[2025-10-13 08:28:40]     "pilotErrorDiag": "",
[2025-10-13 08:28:40]  *** Listing of results directory ***
[2025-10-13 08:28:40] total 627124
[2025-10-13 08:28:40] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 22:12 queuedata.json
[2025-10-13 08:28:40] -rwx------ 1 boincer umatlas     36292 Oct 12 22:13 runpilot2-wrapper.sh
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas       100 Oct 13 02:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:28:40] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 02:39 run_atlas
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas       105 Oct 13 02:39 job.xml
[2025-10-13 08:28:40] -rw-r--r-- 3 boincer umatlas 224321410 Oct 13 02:39 EVNT.46676267._004356.pool.root.1
[2025-10-13 08:28:40] -rw-r--r-- 3 boincer umatlas 224321410 Oct 13 02:39 ATLAS.root_0
[2025-10-13 08:28:40] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 02:39 start_atlas.sh
[2025-10-13 08:28:40] drwxrwx--x 2 boincer umatlas      4096 Oct 13 02:39 shared
[2025-10-13 08:28:40] -rw-r--r-- 2 boincer umatlas    569680 Oct 13 02:39 input.tar.gz
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas         0 Oct 13 02:39 boinc_lockfile
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 05:29 pandaJob.out
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas    972849 Oct 13 05:30 agis_schedconf.cvmfs.json
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 08:22 init_data.xml
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas 185846209 Oct 13 08:27 HITS.46676269._094669.pool.root.1
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas       532 Oct 13 08:27 boinc_task_state.xml
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas      1049 Oct 13 08:27 memory_monitor_summary.json
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas   1560580 Oct 13 08:28 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas    406027 Oct 13 08:28 log.46676269._094669.job.log.tgz.1
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas      7852 Oct 13 08:28 heartbeat.json
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas        29 Oct 13 08:28 wrapper_checkpoint.txt
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 08:28 boinc_mmap_file
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas       819 Oct 13 08:28 pilotlog.txt
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas        96 Oct 13 08:28 pilot_heartbeat.json
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas   1490632 Oct 13 08:28 log.46676269._094669.job.log.1
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas       357 Oct 13 08:28 output.list
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas       620 Oct 13 08:28 runtime_log
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas   1914880 Oct 13 08:28 result.tar.gz
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas      8789 Oct 13 08:28 runtime_log.err
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas       787 Oct 13 08:28 mRULDmKFNS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmvUVMDm2S8Wfn.diag
[2025-10-13 08:28:40] -rw-r--r-- 1 boincer umatlas     23264 Oct 13 08:28 stderr.txt
[2025-10-13 08:28:40] HITS file was successfully produced:
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas 185846209 Oct 13 08:27 shared/HITS.pool.root.1
[2025-10-13 08:28:40]  *** Contents of shared directory: ***
[2025-10-13 08:28:40] total 403008
[2025-10-13 08:28:40] -rw-r--r-- 3 boincer umatlas 224321410 Oct 13 02:39 ATLAS.root_0
[2025-10-13 08:28:40] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 02:39 start_atlas.sh
[2025-10-13 08:28:40] -rw-r--r-- 2 boincer umatlas    569680 Oct 13 02:39 input.tar.gz
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas 185846209 Oct 13 08:27 HITS.pool.root.1
[2025-10-13 08:28:40] -rw------- 1 boincer umatlas   1914880 Oct 13 08:28 result.tar.gz
08:28:42 (22631): run_atlas exited; CPU time 80970.002851
08:28:42 (22631): called boinc_finish(0)

</stderr_txt>
]]>

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