Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 12:31:20 (1436950): vboxwrapper version 26210
2025-10-13 12:31:20 (1436950): BOINC client version: 8.2.5
2025-10-13 12:31:20 (1436950): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-10-13 12:31:21 (1436950): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 12:31:21 (1436950): Create VM. (boinc_1a4e5c993e9ed748, slot#78)
2025-10-13 12:31:21 (1436950): Setting Memory Size for VM. (4096MB)
2025-10-13 12:31:22 (1436950): Setting CPU Count for VM. (1)
2025-10-13 12:31:22 (1436950): Setting Chipset Options for VM.
2025-10-13 12:31:22 (1436950): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 12:31:22 (1436950): Setting Boot Options for VM.
2025-10-13 12:31:23 (1436950): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 12:31:23 (1436950): Enabling VM Network Access.
2025-10-13 12:31:23 (1436950): Disabling USB Support for VM.
2025-10-13 12:31:24 (1436950): Disabling COM Port Support for VM.
2025-10-13 12:31:24 (1436950): Disabling LPT Port Support for VM.
2025-10-13 12:31:24 (1436950): Disabling Audio Support for VM.
2025-10-13 12:31:24 (1436950): Disabling Clipboard Support for VM.
2025-10-13 12:31:25 (1436950): Disabling Drag and Drop Support for VM.
2025-10-13 12:31:25 (1436950): Adding storage controller(s) to VM.
2025-10-13 12:31:25 (1436950): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 12:31:26 (1436950): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 12:31:26 (1436950): forwarding host port 53965 to guest port 80
2025-10-13 12:31:26 (1436950): Enabling remote desktop for VM.
2025-10-13 12:31:27 (1436950): Enabling shared directory for VM.
2025-10-13 12:31:27 (1436950): Starting VM using VBoxManage interface. (boinc_1a4e5c993e9ed748, slot#78)
2025-10-13 12:31:29 (1436950): Successfully started VM. (PID = '1437346')
2025-10-13 12:31:29 (1436950): Reporting VM Process ID to BOINC.
2025-10-13 12:31:29 (1436950): Guest Log: BIOS: VirtualBox 7.0.20
2025-10-13 12:31:29 (1436950): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 12:31:29 (1436950): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 12:31:29 (1436950): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 12:31:29 (1436950): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 12:31:29 (1436950): Detected: Web Application Enabled (http://localhost:53965)
2025-10-13 12:31:29 (1436950): Detected: Remote Desktop Enabled (localhost:56355)
2025-10-13 12:31:29 (1436950): Preference change detected
2025-10-13 12:31:29 (1436950): Setting CPU throttle for VM. (100%)
2025-10-13 12:31:29 (1436950): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 12:31:31 (1436950): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 12:31:31 (1436950): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 12:31:34 (1436950): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 12:31:34 (1436950): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 12:31:34 (1436950): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 12:31:38 (1436950): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 12:31:38 (1436950): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 12:31:49 (1436950): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 12:31:49 (1436950): Guest Log: 00:00:00.000167 main     Log opened 2025-10-13T10:31:47.300150000Z
2025-10-13 12:31:49 (1436950): Guest Log: 00:00:00.000280 main     OS Product: Linux
2025-10-13 12:31:49 (1436950): Guest Log: 00:00:00.000324 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 12:31:49 (1436950): Guest Log: 00:00:00.000343 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 12:31:49 (1436950): Guest Log: 00:00:00.000362 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 12:31:49 (1436950): Guest Log: 00:00:00.000363 main     Process ID: 1240
2025-10-13 12:31:49 (1436950): Guest Log: 00:00:00.000363 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 12:31:49 (1436950): Guest Log: 00:00:00.001466 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 12:31:49 (1436950): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 12:31:49 (1436950): Guest Log: [INFO] Mounting shared directory
2025-10-13 12:31:49 (1436950): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 12:31:50 (1436950): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 12:31:50 (1436950): Guest Log: [INFO] Detected branch: prod
2025-10-13 12:31:50 (1436950): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 12:31:50 (1436950): Guest Log: Copying input files
2025-10-13 12:31:51 (1436950): Guest Log: Copied input files into RunAtlas.
2025-10-13 12:31:51 (1436950): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-10-13 12:32:01 (1436950): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 12:32:01 (1436950): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 12:32:01 (1436950): Guest Log: 2.6.3.0 1509 0 29508 151658 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-10-13 12:32:01 (1436950): Guest Log: copied the webapp to /var/www
2025-10-13 12:32:01 (1436950): Guest Log: core_number=1
2025-10-13 12:32:02 (1436950): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 12:32:02 (1436950): Guest Log:  *** Starting ATLAS job. (PandaID=6839591001 taskID=46676269) ***
2025-10-13 14:10:29 (1436950): Status Report: Elapsed Time: '6000.000000'
2025-10-13 14:10:29 (1436950): Status Report: CPU Time: '5898.050000'
2025-10-13 15:49:30 (1436950): Status Report: Elapsed Time: '12000.000000'
2025-10-13 15:49:30 (1436950): Status Report: CPU Time: '11843.520000'
2025-10-13 17:28:30 (1436950): Status Report: Elapsed Time: '18000.000000'
2025-10-13 17:28:30 (1436950): Status Report: CPU Time: '17788.250000'
2025-10-13 19:07:30 (1436950): Status Report: Elapsed Time: '24000.000000'
2025-10-13 19:07:30 (1436950): Status Report: CPU Time: '23733.670000'
2025-10-13 20:46:31 (1436950): Status Report: Elapsed Time: '30000.000000'
2025-10-13 20:46:31 (1436950): Status Report: CPU Time: '29678.580000'
2025-10-13 22:25:31 (1436950): Status Report: Elapsed Time: '36000.000000'
2025-10-13 22:25:31 (1436950): Status Report: CPU Time: '35623.600000'
2025-10-13 23:04:10 (1436950): Guest Log:  *** Job finished ***
2025-10-13 23:04:10 (1436950): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:03:41,213 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:03:41,213 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:04,286 | INFO     | [monitor] cgroup control has ended
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:04,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139833074341696)>', '<ExcThread(monitor, started 139832634361600)>']
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:05,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:05,240 | INFO     | [monitor] control thread has ended
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,351 | INFO     | all workflow threads have been joined
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,351 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,351 | INFO     | traces error code: 0
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,351 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,447 [wrapper] ==== pilot stdout END ====
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,450 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,454 [wrapper] pilotpid: 5853
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,457 [wrapper] Pilot exit status: 0
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,500 [wrapper] pandaids: 6839591001
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,526 [wrapper] cleanup supervisor_pilot 21278 5854
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,529 [wrapper] Test setup, not cleaning
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,533 [wrapper] apfmon messages muted
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,536 [wrapper] ==== wrapper stdout END ====
2025-10-13 23:04:10 (1436950): Guest Log: 2025-10-13 21:04:09,539 [wrapper] ==== wrapper stderr END ====
2025-10-13 23:04:10 (1436950): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 23:04:10 (1436950): Guest Log:     "exeErrorCode": 0,
2025-10-13 23:04:10 (1436950): Guest Log:     "exeErrorDiag": "",
2025-10-13 23:04:10 (1436950): Guest Log:     "pilotErrorCode": 0,
2025-10-13 23:04:10 (1436950): Guest Log:     "pilotErrorDiag": "",
2025-10-13 23:04:10 (1436950): Guest Log:  *** Listing of results directory ***
2025-10-13 23:04:10 (1436950): Guest Log: total 208632
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 06:14 pilot3.tar.gz
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 06:19 queuedata.json
2025-10-13 23:04:10 (1436950): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 06:21 runpilot2-wrapper.sh
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 13 10:31 start_atlas.sh
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 atlas atlas      9393 Oct 13 10:31 init_data.xml
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 atlas atlas    569684 Oct 13 10:31 input.tar.gz
2025-10-13 23:04:10 (1436950): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 10:31 EVNT.46676267._004346.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 13 10:32 pandaJob.out
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas    972497 Oct 13 10:32 agis_schedconf.cvmfs.json
2025-10-13 23:04:10 (1436950): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 10:32 pilot3
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas 197989757 Oct 13 21:02 HITS.46676269._072433.pool.root.1
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 21:02 pilot_heartbeat.json
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas      1027 Oct 13 21:02 memory_monitor_summary.json
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 21:03 agis_ddmendpoints.agis.ALL.json
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas    696448 Oct 13 21:03 log.46676269._072433.job.log.tgz.1
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas      7821 Oct 13 21:03 heartbeat.json
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 13 21:04 pilotlog.txt
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas   5210009 Oct 13 21:04 log.46676269._072433.job.log.1
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 21:04 output.list
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 21:04 runtime_log
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas   5928960 Oct 13 21:04 result.tar.gz
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 atlas atlas      8516 Oct 13 21:04 runtime_log.err
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas       657 Oct 13 21:04 EPUKDmAd4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwoiNDmvEzJDn.diag
2025-10-13 23:04:10 (1436950): Guest Log: Looking for outputfile HITS.46676269._072433.pool.root.1
2025-10-13 23:04:10 (1436950): Guest Log: HITS file was successfully produced
2025-10-13 23:04:10 (1436950): Guest Log: -rw-------. 1 atlas atlas 197989757 Oct 13 21:02 /home/atlas/RunAtlas/HITS.46676269._072433.pool.root.1
2025-10-13 23:04:10 (1436950): Guest Log: Successfully finished the ATLAS job!
2025-10-13 23:04:10 (1436950): Guest Log: Copying the results back to the shared directory!
2025-10-13 23:04:10 (1436950): Guest Log:  *** Contents of shared directory: ***
2025-10-13 23:04:10 (1436950): Guest Log: total 222612
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 root root 221415899 Oct 13 10:31 ATLAS.root_0
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 root root      9393 Oct 13 10:31 init_data.xml
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 root root    569684 Oct 13 10:31 input.tar.gz
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 root root   5928960 Oct 13 21:04 result.tar.gz
2025-10-13 23:04:10 (1436950): Guest Log: -rw-r--r--. 1 root root     15120 Oct 13 10:31 start_atlas.sh
2025-10-13 23:04:10 (1436950): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 23:04:10 (1436950): VM Completion File Detected.
2025-10-13 23:04:10 (1436950): Powering off VM.
2025-10-13 23:04:11 (1436950): Successfully stopped VM.
2025-10-13 23:04:11 (1436950): Deregistering VM. (boinc_1a4e5c993e9ed748, slot#78)
2025-10-13 23:04:11 (1436950): Removing network bandwidth throttle group from VM.
2025-10-13 23:04:11 (1436950): Removing VM from VirtualBox.
2025-10-13 23:04:16 (1436950): called boinc_finish(0)

</stderr_txt>
]]>

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