Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:23:33 (675481): wrapper (7.7.26015): starting
02:23:33 (675481): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 02:23:33] Arguments: --nthreads 9
[2025-10-13 02:23:33] Threads: 9
[2025-10-13 02:23:33] Checking for CVMFS
[2025-10-13 02:23:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:23:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:23:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:23:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:23:34] 2.13.2.0 3269412 36802 378700 151650 2 489 26113451 40960001 23647 16776704 0 476169409 99.849 187113978 36723 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 02:23:34] CVMFS is ok
[2025-10-13 02:23:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:23:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:23:34] Further information can be found at the LHC@home message board.
[2025-10-13 02:23:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:23:34] Checking for apptainer binary...
[2025-10-13 02:23:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:23:34] Running /usr/bin/apptainer --version
[2025-10-13 02:23:34] apptainer version 1.4.3-1.el9
[2025-10-13 02:23:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:23:34] c8-16-2.aglt2.org
[2025-10-13 02:23:34] apptainer works
[2025-10-13 02:23:34] Set ATHENA_PROC_NUMBER=9
[2025-10-13 02:23:34] Set ATHENA_CORE_NUMBER=9
[2025-10-13 02:23:34] Starting ATLAS job with PandaID=6840851766
[2025-10-13 02:23:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:17:04]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:17:04] 2025-10-13 07:16:11,837 | INFO     | job 6840851766 has state=finished
[2025-10-13 03:17:04] 2025-10-13 07:16:11,838 | INFO     | preparing for final server update for job 6840851766 in state='finished'
[2025-10-13 03:17:04] 2025-10-13 07:16:11,838 | INFO     | this job has now completed (state=finished)
[2025-10-13 03:17:04] 2025-10-13 07:16:11,838 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 03:17:04] 2025-10-13 07:16:11,838 | INFO     | log transfer has been attempted: DONE
[2025-10-13 03:17:04] 2025-10-13 07:16:11,838 | INFO     | job 6840851766 has finished - writing final server update
[2025-10-13 03:17:04] 2025-10-13 07:16:11,839 | INFO     | total number of processed events: 400 (read)
[2025-10-13 03:17:04] 2025-10-13 07:16:11,843 | INFO     | executing command: lscpu
[2025-10-13 03:17:04] 2025-10-13 07:16:11,990 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 03:17:04] 2025-10-13 07:16:12,126 | INFO     | time since job start (3147s) is within the limit (172800.0s)
[2025-10-13 03:17:04] 2025-10-13 07:16:13,087 | INFO     | monitor loop #213: job 0:6840851766 is in state 'finished'
[2025-10-13 03:17:04] 2025-10-13 07:16:13,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:17:04] 2025-10-13 07:16:14,135 | INFO     | time since job start (3149s) is within the limit (172800.0s)
[2025-10-13 03:17:04] 2025-10-13 07:16:15,592 | INFO     | monitor loop #214: job 0:6840851766 is in state 'finished'
[2025-10-13 03:17:04] 2025-10-13 07:16:15,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:17:04] 2025-10-13 07:16:16,142 | INFO     | time since job start (3151s) is within the limit (172800.0s)
[2025-10-13 03:17:04] 2025-10-13 07:16:18,101 | INFO     | monitor loop #215: job 0:6840851766 is in state 'finished'
[2025-10-13 03:17:04] 2025-10-13 07:16:18,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:17:04] 2025-10-13 07:16:18,152 | INFO     | time since job start (3153s) is within the limit (172800.0s)
[2025-10-13 03:17:04] 2025-10-13 07:16:20,162 | INFO     | time since job start (3155s) is within the limit (172800.0s)
[2025-10-13 03:17:04] 2025-10-13 07:16:20,606 | INFO     | monitor loop #216: job 0:6840851766 is in state 'finished'
[2025-10-13 03:17:04] 2025-10-13 07:16:20,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:17:04] 2025-10-13 07:16:22,234 | INFO     | PID=679307 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:17:04] 2025-10-13 07:16:22,234 | INFO     | .. there are 41 such processes running
[2025-10-13 03:17:04] 2025-10-13 07:16:23,117 | INFO     | monitor loop #217: job 0:6840851766 is in state 'finished'
[2025-10-13 03:17:04] 2025-10-13 07:16:23,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:17:04] 2025-10-13 07:16:23,235 | INFO     | time since job start (3158s) is within the limit (172800.0s)
[2025-10-13 03:17:04] 2025-10-13 07:16:25,243 | INFO     | time since job start (3160s) is within the limit (172800.0s)
[2025-10-13 03:17:04] 2025-10-13 07:16:25,620 | INFO     | monitor loop #218: job 0:6840851766 is in state 'finished'
[2025-10-13 03:17:04] 2025-10-13 07:16:25,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:17:04] 2025-10-13 07:16:27,250 | INFO     | time since job start (3162s) is within the limit (172800.0s)
[2025-10-13 03:17:04] 2025-10-13 07:16:28,129 | INFO     | monitor loop #219: job 0:6840851766 is in state 'finished'
[2025-10-13 03:17:04] 2025-10-13 07:16:28,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:17:04] 2025-10-13 07:16:29,257 | INFO     | time since job start (3164s) is within the limit (172800.0s)
[2025-10-13 03:17:04] 2025-10-13 07:16:30,626 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 03:17:04] 2025-10-13 07:16:30,632 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.990015624998
[2025-10-13 03:17:04] 2025-10-13 07:16:30,634 | INFO     | monitor loop #220: job 0:6840851766 is in state 'finished'
[2025-10-13 03:17:04] 2025-10-13 07:16:30,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:17:04] 2025-10-13 07:16:30,656 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6840851766/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:17:04] 2025-10-13 07:16:30,661 | INFO     | extracted standard info from prmon json
[2025-10-13 03:17:04] 2025-10-13 07:16:30,661 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:17:04] 2025-10-13 07:16:30,661 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:17:04] 2025-10-13 07:16:30,662 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:17:04] 2025-10-13 07:16:30,662 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:17:04] 2025-10-13 07:16:30,662 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:17:04] 2025-10-13 07:16:30,662 | INFO     | sum of square deviations: 26400495.0
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | sum of deviations: -346861280.5
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | mean x: 1760338273.5
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | mean y: 2207065.75
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | -- intersect: 23130303249.52872
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | intersect: 23130303249.52872
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | chi2: 0.011068125326593315
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | -- intersect: 23130303249.52872
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | current memory leak: -13.14 B/s (using 44 data points, chi2=0.01)
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | could have reported an average CPU frequency of 3785 MHz (5 samples)
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | ..............................
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | . Timing measurements:
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | . get job = 0 s
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | . initial setup = 2 s
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | . payload setup = 7 s
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | . stage-in = 0 s
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | . payload execution = 3115 s
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | . stage-out = 0 s
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | . log creation = 0 s
[2025-10-13 03:17:04] 2025-10-13 07:16:30,663 | INFO     | ..............................
[2025-10-13 03:17:04] 2025-10-13 07:16:30,716 | INFO     | 
[2025-10-13 03:17:04] 2025-10-13 07:16:30,716 | INFO     | job summary report
[2025-10-13 03:17:04] 2025-10-13 07:16:30,716 | INFO     | --------------------------------------------------
[2025-10-13 03:17:04] 2025-10-13 07:16:30,716 | INFO     | PanDA job id: 6840851766
[2025-10-13 03:17:04] 2025-10-13 07:16:30,716 | INFO     | task id: 46676269
[2025-10-13 03:17:04] 2025-10-13 07:16:30,716 | INFO     | errors: (none)
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | pilot state: finished 
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | transexitcode: 0
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | exeerrorcode: 0
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | exeerrordiag: 
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | exitcode: 0
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | exitmsg: OK
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | cpuconsumptiontime: 22155 s
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | nevents: 400
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | neventsw: 0
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | pid: 686632
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | pgrp: 686632
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | corecount: 9
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | event service: False
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 3125: 2374641, 3126: 2374640, 3127: 2383694, 3128: 2383878, 3149: 2384104}
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | --------------------------------------------------
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | 
[2025-10-13 03:17:04] 2025-10-13 07:16:30,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-10-13 03:17:04] 2025-10-13 07:16:30,801 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,801 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,801 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,801 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,801 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,801 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,801 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,801 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | job 6840851766 has completed (purged errors)
[2025-10-13 03:17:04] 2025-10-13 07:16:30,802 | INFO     | overall cleanup function is called
[2025-10-13 03:17:04] 2025-10-13 07:16:31,814 | INFO     | --- collectZombieJob: --- 10, [686632]
[2025-10-13 03:17:04] 2025-10-13 07:16:31,814 | INFO     | zombie collector waiting for pid 686632
[2025-10-13 03:17:04] 2025-10-13 07:16:31,814 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:17:04] 2025-10-13 07:16:31,814 | INFO     | collected zombie processes
[2025-10-13 03:17:04] 2025-10-13 07:16:31,814 | INFO     | will attempt to kill all subprocesses of pid=686632
[2025-10-13 03:17:04] 2025-10-13 07:16:32,948 | INFO     | process IDs to be killed: [686632] (in reverse order)
[2025-10-13 03:17:04] 2025-10-13 07:16:33,244 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:17:04] 2025-10-13 07:16:33,244 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:17:04] 2025-10-13 07:16:33,278 | INFO     | did not find any defunct processes belonging to 686632
[2025-10-13 03:17:04] 2025-10-13 07:16:33,311 | INFO     | did not find any defunct processes belonging to 686632
[2025-10-13 03:17:04] 2025-10-13 07:16:33,311 | INFO     | ready for new job
[2025-10-13 03:17:04] 2025-10-13 07:16:33,311 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:17:04] 2025-10-13 07:16:33,313 | INFO     | ***************************************
[2025-10-13 03:17:04] 2025-10-13 07:16:33,313 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:17:04] 2025-10-13 07:16:33,313 | INFO     | ***************************************
[2025-10-13 03:17:04] 2025-10-13 07:16:33,313 | INFO     | 
[2025-10-13 03:17:04] 2025-10-13 07:16:33,318 | INFO     | architecture information:
[2025-10-13 03:17:04] 2025-10-13 07:16:33,318 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:17:04] 2025-10-13 07:16:33,349 | INFO     | cat /etc/os-release:
[2025-10-13 03:17:04] NAME="CentOS Linux"
[2025-10-13 03:17:04] VERSION="7 (Core)"
[2025-10-13 03:17:04] ID="centos"
[2025-10-13 03:17:04] ID_LIKE="rhel fedora"
[2025-10-13 03:17:04] VERSION_ID="7"
[2025-10-13 03:17:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:17:04] ANSI_COLOR="0;31"
[2025-10-13 03:17:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:17:04] HOME_URL="https://www.centos.org/"
[2025-10-13 03:17:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:17:04] 
[2025-10-13 03:17:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:17:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:17:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:17:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:17:04] 
[2025-10-13 03:17:04] 2025-10-13 07:16:33,350 | INFO     | ***************************************
[2025-10-13 03:17:04] 2025-10-13 07:16:33,853 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-10-13 03:17:04] 2025-10-13 07:16:33,904 | INFO     | sufficient remaining disk space (164635869184 B)
[2025-10-13 03:17:04] 2025-10-13 07:16:33,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:17:04] 2025-10-13 07:16:33,905 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:17:04] 2025-10-13 07:16:33,905 | INFO     | update_server=False
[2025-10-13 03:17:04] 2025-10-13 07:16:33,905 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:17:04] 2025-10-13 07:16:33,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:17:04] 2025-10-13 07:16:34,009 | INFO     | all job control threads have been joined
[2025-10-13 03:17:04] 2025-10-13 07:16:34,147 | INFO     | all data control threads have been joined
[2025-10-13 03:17:04] 2025-10-13 07:16:34,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:17:04] 2025-10-13 07:16:34,147 | INFO     | aborting loop
[2025-10-13 03:17:04] 2025-10-13 07:16:34,189 | INFO     | all payload control threads have been joined
[2025-10-13 03:17:04] 2025-10-13 07:16:34,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:17:04] 2025-10-13 07:16:34,912 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:35,015 | INFO     | [job] control thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:35,153 | INFO     | [data] control thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:35,153 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:35,195 | INFO     | [payload] control thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:35,417 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:35,470 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:35,607 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:35,675 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:35,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:17:04] 2025-10-13 07:16:35,762 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:35,984 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:36,299 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:36,401 | INFO     | [job] validate thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:36,673 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:36,752 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:37,916 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:17:04] 2025-10-13 07:16:50,836 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:17:04] 2025-10-13 07:16:51,842 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140463701063488)>', '<ExcThread(monitor, started 140463071815424)>']
[2025-10-13 03:17:04] 2025-10-13 07:16:56,886 | INFO     | all workflow threads have been joined
[2025-10-13 03:17:04] 2025-10-13 07:16:56,886 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:17:04] 2025-10-13 07:16:56,886 | INFO     | traces error code: 0
[2025-10-13 03:17:04] 2025-10-13 07:16:56,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:17:04] 2025-10-13 07:17:03,492 | INFO     | PID=679307 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 03:17:04] 2025-10-13 07:17:03,492 | INFO     | .. there are 41 such processes running
[2025-10-13 03:17:04] 2025-10-13 07:17:03,493 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:17:04] 2025-10-13 07:17:03,493 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:17:04] 2025-10-13 07:17:03,493 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:17:04] 2025-10-13 07:17:03,493 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:17:04] 2025-10-13 07:17:03,493 | INFO     | [monitor] control thread has ended
[2025-10-13 03:17:04] 2025-10-13 07:17:03,745 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:17:04] 2025-10-13 07:17:03,762 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:17:04] 2025-10-13 07:17:03,764 [wrapper] pilotpid: 679307
[2025-10-13 03:17:04] 2025-10-13 07:17:03,765 [wrapper] Pilot exit status: 0
[2025-10-13 03:17:04] 2025-10-13 07:17:03,868 [wrapper] pandaids: 6840851766
[2025-10-13 03:17:04] 2025-10-13 07:17:04,164 [wrapper] cleanup supervisor_pilot 1058475 679308
[2025-10-13 03:17:04] 2025-10-13 07:17:04,183 [wrapper] Test setup, not cleaning
[2025-10-13 03:17:04] 2025-10-13 07:17:04,217 [wrapper] apfmon messages muted
[2025-10-13 03:17:04] 2025-10-13 07:17:04,234 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:17:04] 2025-10-13 07:17:04,236 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:17:04]  *** Error codes and diagnostics ***
[2025-10-13 03:17:04]     "exeErrorCode": 0,
[2025-10-13 03:17:04]     "exeErrorDiag": "",
[2025-10-13 03:17:04]     "pilotErrorCode": 0,
[2025-10-13 03:17:04]     "pilotErrorDiag": "",
[2025-10-13 03:17:04]  *** Listing of results directory ***
[2025-10-13 03:17:04] total 411940
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 18:20 queuedata.json
[2025-10-13 03:17:04] -rwx------. 1 boincer umatlas     36292 Oct 12 18:20 runpilot2-wrapper.sh
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas       100 Oct 13 02:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:17:04] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 02:23 run_atlas
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas       105 Oct 13 02:23 job.xml
[2025-10-13 03:17:04] -rw-r--r--. 2 boincer umatlas 222834113 Oct 13 02:23 EVNT.46676267._004609.pool.root.1
[2025-10-13 03:17:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 02:23 start_atlas.sh
[2025-10-13 03:17:04] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 02:23 shared
[2025-10-13 03:17:04] -rw-r--r--. 2 boincer umatlas    569682 Oct 13 02:23 input.tar.gz
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas         0 Oct 13 02:23 boinc_lockfile
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 02:23 pandaJob.out
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas    973230 Oct 13 02:23 agis_schedconf.cvmfs.json
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas   1560580 Oct 13 02:23 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:17:04] drwx------. 5 boincer umatlas      4096 Oct 13 02:23 pilot3
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas      7163 Oct 13 03:12 init_data.xml
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas 193519554 Oct 13 03:15 HITS.46676269._090945.pool.root.1
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas       529 Oct 13 03:15 boinc_task_state.xml
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas      1030 Oct 13 03:16 memory_monitor_summary.json
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas    323801 Oct 13 03:16 log.46676269._090945.job.log.tgz.1
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas      7771 Oct 13 03:16 heartbeat.json
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas        27 Oct 13 03:17 wrapper_checkpoint.txt
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 03:17 boinc_mmap_file
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas        95 Oct 13 03:17 pilot_heartbeat.json
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas       822 Oct 13 03:17 pilotlog.txt
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas    463631 Oct 13 03:17 log.46676269._090945.job.log.1
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas       357 Oct 13 03:17 output.list
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas       620 Oct 13 03:17 runtime_log
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas    808960 Oct 13 03:17 result.tar.gz
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas       651 Oct 13 03:17 U3LODmgbJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm79UMDmmxNykm.diag
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 03:17 runtime_log.err
[2025-10-13 03:17:04] -rw-r--r--. 1 boincer umatlas     22259 Oct 13 03:17 stderr.txt
[2025-10-13 03:17:04] HITS file was successfully produced:
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas 193519554 Oct 13 03:15 shared/HITS.pool.root.1
[2025-10-13 03:17:04]  *** Contents of shared directory: ***
[2025-10-13 03:17:04] total 407968
[2025-10-13 03:17:04] -rw-r--r--. 2 boincer umatlas 222834113 Oct 13 02:23 ATLAS.root_0
[2025-10-13 03:17:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 02:23 start_atlas.sh
[2025-10-13 03:17:04] -rw-r--r--. 2 boincer umatlas    569682 Oct 13 02:23 input.tar.gz
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas 193519554 Oct 13 03:15 HITS.pool.root.1
[2025-10-13 03:17:04] -rw-------. 1 boincer umatlas    808960 Oct 13 03:17 result.tar.gz
03:17:06 (675481): run_atlas exited; CPU time 22266.770564
03:17:06 (675481): called boinc_finish(0)

</stderr_txt>
]]>

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