Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:38:32 (2767361): wrapper (7.7.26015): starting
06:38:32 (2767361): wrapper: running run_atlas (--nthreads 6)
[2025-10-14 06:38:32] Arguments: --nthreads 6
[2025-10-14 06:38:32] Threads: 6
[2025-10-14 06:38:32] Checking for CVMFS
[2025-10-14 06:38:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 06:38:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 06:38:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 06:38:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 06:38:33] 2.11.5.0 2717720 77 51908 151674 1 57 42948692 52428801 101 130560 0 153531 99.982 6790 29 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-14 06:38:33] CVMFS is ok
[2025-10-14 06:38:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 06:38:33] Checking for apptainer binary...
[2025-10-14 06:38:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 06:38:33] Running /usr/bin/apptainer --version
[2025-10-14 06:38:33] apptainer version 1.3.6-1.el9
[2025-10-14 06:38:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 06:38:33] testio002
[2025-10-14 06:38:33] apptainer works
[2025-10-14 06:38:33] Set ATHENA_PROC_NUMBER=6
[2025-10-14 06:38:33] Set ATHENA_CORE_NUMBER=6
[2025-10-14 06:38:33] Starting ATLAS job with PandaID=6840530472
[2025-10-14 06:38:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 07:41:25]  *** The last 200 lines of the pilot log: ***
[2025-10-14 07:41:25] 2025-10-13 22:40:10,169 | INFO     | time since job start (3670s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:12,174 | INFO     | time since job start (3672s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:14,179 | INFO     | time since job start (3674s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:15,220 | INFO     | PID=2771216 has CPU usage=0.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 07:41:25] 2025-10-13 22:40:15,220 | INFO     | .. there are 2 such processes running
[2025-10-14 07:41:25] 2025-10-13 22:40:16,220 | INFO     | time since job start (3676s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:18,226 | INFO     | time since job start (3678s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:20,231 | INFO     | time since job start (3680s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:22,236 | INFO     | time since job start (3682s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:24,242 | INFO     | time since job start (3684s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:26,247 | INFO     | time since job start (3686s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:28,252 | INFO     | time since job start (3688s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:30,257 | INFO     | time since job start (3690s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:32,263 | INFO     | time since job start (3692s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:34,267 | INFO     | time since job start (3694s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:36,272 | INFO     | time since job start (3696s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:37,314 | INFO     | PID=2771216 has CPU usage=0.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 07:41:25] 2025-10-13 22:40:37,314 | INFO     | .. there are 2 such processes running
[2025-10-14 07:41:25] 2025-10-13 22:40:38,314 | INFO     | time since job start (3698s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:40,320 | INFO     | time since job start (3700s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:42,324 | INFO     | time since job start (3702s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:44,329 | INFO     | time since job start (3704s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:46,334 | INFO     | time since job start (3706s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:48,339 | INFO     | time since job start (3708s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:50,344 | INFO     | time since job start (3710s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:52,349 | INFO     | time since job start (3712s) is within the limit (172800.0s)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,045 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-14 07:41:25] 2025-10-13 22:40:54,048 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4174.8004375
[2025-10-14 07:41:25] 2025-10-13 22:40:54,049 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6840530472/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,049 | INFO     | extracted standard info from prmon json
[2025-10-14 07:41:25] 2025-10-13 22:40:54,049 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 07:41:25] 2025-10-13 22:40:54,049 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 07:41:25] 2025-10-13 22:40:54,049 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 07:41:25] 2025-10-13 22:40:54,049 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | fitting pss+swap vs Time
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | sufficient remaining disk space (302555070464 B)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | sum of square deviations: 46147842.0
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | sum of deviations: -2169909141.0
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | mean x: 1760393448.0
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | mean y: 2495117.0
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | -- intersect: 82777629749.98474
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | intersect: 82777629749.98474
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | chi2: 0.03390152417255471
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | -- intersect: 82777629749.98474
[2025-10-14 07:41:25] 2025-10-13 22:40:54,050 | INFO     | current memory leak: -47.02 B/s (using 53 data points, chi2=0.03)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | could have reported an average CPU frequency of 4341 MHz (5 samples)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | ..............................
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | . Timing measurements:
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | . get job = 0 s
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | . initial setup = 7 s
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | . payload setup = 2 s
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | . stage-in = 0 s
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | . payload execution = 3621 s
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | . stage-out = 0 s
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | . log creation = 0 s
[2025-10-14 07:41:25] 2025-10-13 22:40:54,051 | INFO     | ..............................
[2025-10-14 07:41:25] 2025-10-13 22:40:54,077 | INFO     | 
[2025-10-14 07:41:25] 2025-10-13 22:40:54,077 | INFO     | job summary report
[2025-10-14 07:41:25] 2025-10-13 22:40:54,077 | INFO     | --------------------------------------------------
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | PanDA job id: 6840530472
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | task id: 46676269
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | errors: (none)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | pilot state: finished 
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | transexitcode: 0
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | exeerrorcode: 0
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | exeerrordiag: 
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | exitcode: 0
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | exitmsg: OK
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | cpuconsumptiontime: 19726 s
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | nevents: 400
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | neventsw: 0
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | pid: 2781925
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | pgrp: 2781925
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | corecount: 6
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | event service: False
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | sizes: {0: 2348855, 2: 2349117, 11: 2349145, 3627: 2383866, 3628: 2383866, 3702: 2384092}
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | --------------------------------------------------
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | 
[2025-10-14 07:41:25] 2025-10-13 22:40:54,078 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-10-14 07:41:25] 2025-10-13 22:40:54,080 | INFO     | size of work directory /var/lib/boinc/slots/4/PanDA_Pilot-6840530472: 2739412 B (within 2537553920 B limit)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,080 | INFO     | pfn file=/var/lib/boinc/slots/4/PanDA_Pilot-6840530472/HITS.46676269._085398.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,080 | INFO     | total size of present files: 0 B (workdir size: 2739412 B)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,080 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/4/PanDA_Pilot-6840530472/HITS.46676269._085398.pool.root.1 since it does not exist
[2025-10-14 07:41:25] 2025-10-13 22:40:54,083 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,083 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,083 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,083 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,083 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,083 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,083 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,083 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,083 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,083 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | job 6840530472 has completed (purged errors)
[2025-10-14 07:41:25] 2025-10-13 22:40:54,084 | INFO     | overall cleanup function is called
[2025-10-14 07:41:25] 2025-10-13 22:40:54,111 | INFO     | number of running child processes to parent process 2781925: 1
[2025-10-14 07:41:25] 2025-10-13 22:40:54,111 | INFO     | maximum number of monitored processes: 6
[2025-10-14 07:41:25] 2025-10-13 22:40:54,111 | INFO     | aborting job monitoring since job object (job id=6840530472) has expired
[2025-10-14 07:41:25] 2025-10-13 22:40:55,089 | INFO     | --- collectZombieJob: --- 10, [2781925]
[2025-10-14 07:41:25] 2025-10-13 22:40:55,089 | INFO     | zombie collector waiting for pid 2781925
[2025-10-14 07:41:25] 2025-10-13 22:40:55,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 07:41:25] 2025-10-13 22:40:55,089 | INFO     | collected zombie processes
[2025-10-14 07:41:25] 2025-10-13 22:40:55,089 | INFO     | will attempt to kill all subprocesses of pid=2781925
[2025-10-14 07:41:25] 2025-10-13 22:40:55,118 | INFO     | process IDs to be killed: [2781925] (in reverse order)
[2025-10-14 07:41:25] 2025-10-13 22:40:55,131 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 07:41:25] 2025-10-13 22:40:55,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 07:41:25] 2025-10-13 22:40:55,132 | INFO     | did not find any defunct processes belonging to 2781925
[2025-10-14 07:41:25] 2025-10-13 22:40:55,133 | INFO     | did not find any defunct processes belonging to 2781925
[2025-10-14 07:41:25] 2025-10-13 22:40:55,133 | INFO     | ready for new job
[2025-10-14 07:41:25] 2025-10-13 22:40:55,133 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 07:41:25] 2025-10-13 22:40:55,134 | INFO     | ***************************************
[2025-10-14 07:41:25] 2025-10-13 22:40:55,134 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 07:41:25] 2025-10-13 22:40:55,134 | INFO     | ***************************************
[2025-10-14 07:41:25] 2025-10-13 22:40:55,134 | INFO     | 
[2025-10-14 07:41:25] 2025-10-13 22:40:55,134 | INFO     | architecture information:
[2025-10-14 07:41:25] 2025-10-13 22:40:55,134 | INFO     | executing command: cat /etc/os-release
[2025-10-14 07:41:25] 2025-10-13 22:40:55,138 | INFO     | cat /etc/os-release:
[2025-10-14 07:41:25] NAME="CentOS Linux"
[2025-10-14 07:41:25] VERSION="7 (Core)"
[2025-10-14 07:41:25] ID="centos"
[2025-10-14 07:41:25] ID_LIKE="rhel fedora"
[2025-10-14 07:41:25] VERSION_ID="7"
[2025-10-14 07:41:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 07:41:25] ANSI_COLOR="0;31"
[2025-10-14 07:41:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 07:41:25] HOME_URL="https://www.centos.org/"
[2025-10-14 07:41:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 07:41:25] 
[2025-10-14 07:41:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 07:41:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 07:41:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 07:41:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 07:41:25] 
[2025-10-14 07:41:25] 2025-10-13 22:40:55,138 | INFO     | ***************************************
[2025-10-14 07:41:25] 2025-10-13 22:40:55,641 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-10-14 07:41:25] 2025-10-13 22:40:55,657 | INFO     | sufficient remaining disk space (302562410496 B)
[2025-10-14 07:41:25] 2025-10-13 22:40:55,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 07:41:25] 2025-10-13 22:40:55,657 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 07:41:25] 2025-10-13 22:40:55,658 | INFO     | update_server=False
[2025-10-14 07:41:25] 2025-10-13 22:40:55,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 07:41:25] 2025-10-13 22:40:55,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 07:41:25] 2025-10-13 22:40:55,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 07:41:25] 2025-10-13 22:40:55,658 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 07:41:25] 2025-10-13 22:40:55,658 | INFO     | aborting loop
[2025-10-14 07:41:25] 2025-10-13 22:40:55,864 | INFO     | all payload control threads have been joined
[2025-10-14 07:41:25] 2025-10-13 22:40:56,004 | INFO     | all data control threads have been joined
[2025-10-14 07:41:25] 2025-10-13 22:40:56,659 | INFO     | [job] queue monitor thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:56,663 | INFO     | [job] retrieve thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:56,663 | INFO     | [job] job monitor thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:56,811 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:56,870 | INFO     | [payload] control thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:57,010 | INFO     | [data] control thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:57,152 | INFO     | [payload] validate_post thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:57,246 | INFO     | all job control threads have been joined
[2025-10-14 07:41:25] 2025-10-13 22:40:57,663 | INFO     | [data] copytool_out thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:57,748 | INFO     | [job] validate thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:57,803 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:57,851 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:57,868 | INFO     | [data] copytool_in thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:58,020 | INFO     | [payload] failed_post thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:40:58,221 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 07:41:25] 2025-10-13 22:40:58,251 | INFO     | [job] control thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:41:02,227 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:41:05,874 | INFO     | [monitor] cgroup control has ended
[2025-10-14 07:41:25] 2025-10-13 22:41:06,126 | INFO     | job.realtimelogging is not enabled
[2025-10-14 07:41:25] 2025-10-13 22:41:07,129 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 07:41:25] 2025-10-13 22:41:09,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139991565104960)>', '<ExcThread(monitor, started 139991061604096)>']
[2025-10-14 07:41:25] 2025-10-13 22:41:14,092 | INFO     | all workflow threads have been joined
[2025-10-14 07:41:25] 2025-10-13 22:41:14,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 07:41:25] 2025-10-13 22:41:14,092 | INFO     | traces error code: 0
[2025-10-14 07:41:25] 2025-10-13 22:41:14,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 07:41:25] 2025-10-13 22:41:25,481 | INFO     | PID=2771216 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 07:41:25] 2025-10-13 22:41:25,485 | INFO     | .. there are 2 such processes running
[2025-10-14 07:41:25] 2025-10-13 22:41:25,485 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 07:41:25] 2025-10-13 22:41:25,485 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 07:41:25] 2025-10-13 22:41:25,485 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 07:41:25] 2025-10-13 22:41:25,485 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 07:41:25] 2025-10-13 22:41:25,485 | INFO     | [monitor] control thread has ended
[2025-10-14 07:41:25] 2025-10-13 22:41:25,519 [wrapper] ==== pilot stdout END ====
[2025-10-14 07:41:25] 2025-10-13 22:41:25,519 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 07:41:25] 2025-10-13 22:41:25,520 [wrapper] pilotpid: 2771216
[2025-10-14 07:41:25] 2025-10-13 22:41:25,521 [wrapper] Pilot exit status: 0
[2025-10-14 07:41:25] 2025-10-13 22:41:25,523 [wrapper] pandaids: 6840530472
[2025-10-14 07:41:25] 2025-10-13 22:41:25,530 [wrapper] cleanup supervisor_pilot 2807132 2771217
[2025-10-14 07:41:25] 2025-10-13 22:41:25,531 [wrapper] Test setup, not cleaning
[2025-10-14 07:41:25] 2025-10-13 22:41:25,531 [wrapper] apfmon messages muted
[2025-10-14 07:41:25] 2025-10-13 22:41:25,532 [wrapper] ==== wrapper stdout END ====
[2025-10-14 07:41:25] 2025-10-13 22:41:25,532 [wrapper] ==== wrapper stderr END ====
[2025-10-14 07:41:25]  *** Error codes and diagnostics ***
[2025-10-14 07:41:25]     "exeErrorCode": 0,
[2025-10-14 07:41:25]     "exeErrorDiag": "",
[2025-10-14 07:41:25]     "pilotErrorCode": 0,
[2025-10-14 07:41:25]     "pilotErrorDiag": "",
[2025-10-14 07:41:25]  *** Listing of results directory ***
[2025-10-14 07:41:25] total 413988
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc    557409 Oct 13 02:32 pilot3.tar.gz
[2025-10-14 07:41:25] -rwx------. 1 boinc boinc     36292 Oct 13 02:54 runpilot2-wrapper.sh
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc      5112 Oct 13 02:54 queuedata.json
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc       100 Oct 14 06:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 07:41:25] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 06:38 run_atlas
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc       105 Oct 14 06:38 job.xml
[2025-10-14 07:41:25] -rw-r--r--. 2 boinc boinc     15120 Oct 14 06:38 start_atlas.sh
[2025-10-14 07:41:25] drwxrwx--x. 2 boinc boinc        68 Oct 14 06:38 shared
[2025-10-14 07:41:25] -rw-r--r--. 2 boinc boinc    569681 Oct 14 06:38 input.tar.gz
[2025-10-14 07:41:25] -rw-r--r--. 2 boinc boinc 219517374 Oct 14 06:38 EVNT.46676267._004052.pool.root.1
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc         0 Oct 14 06:38 boinc_lockfile
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc      2549 Oct 14 06:38 pandaJob.out
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc    972791 Oct 14 06:38 agis_schedconf.cvmfs.json
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc   1560580 Oct 14 06:38 agis_ddmendpoints.agis.ALL.json
[2025-10-14 07:41:25] drwx------. 5 boinc boinc      4096 Oct 14 06:39 pilot3
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc      9634 Oct 14 07:01 init_data.xml
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc 198871701 Oct 14 07:39 HITS.46676269._085398.pool.root.1
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc      1025 Oct 14 07:39 memory_monitor_summary.json
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc    267074 Oct 14 07:39 log.46676269._085398.job.log.tgz.1
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc       529 Oct 14 07:39 boinc_task_state.xml
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc      7790 Oct 14 07:40 heartbeat.json
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc      8192 Oct 14 07:41 boinc_mmap_file
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc        27 Oct 14 07:41 wrapper_checkpoint.txt
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc       822 Oct 14 07:41 pilotlog.txt
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc        95 Oct 14 07:41 pilot_heartbeat.json
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc    557223 Oct 14 07:41 log.46676269._085398.job.log.1
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc       357 Oct 14 07:41 output.list
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc       620 Oct 14 07:41 runtime_log
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc    839680 Oct 14 07:41 result.tar.gz
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc      8661 Oct 14 07:41 runtime_log.err
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc       641 Oct 14 07:41 4aKLDm8RFS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3wkNDmn6XZIn.diag
[2025-10-14 07:41:25] -rw-r--r--. 1 boinc boinc     22031 Oct 14 07:41 stderr.txt
[2025-10-14 07:41:25] HITS file was successfully produced:
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc 198871701 Oct 14 07:39 shared/HITS.pool.root.1
[2025-10-14 07:41:25]  *** Contents of shared directory: ***
[2025-10-14 07:41:25] total 409984
[2025-10-14 07:41:25] -rw-r--r--. 2 boinc boinc     15120 Oct 14 06:38 start_atlas.sh
[2025-10-14 07:41:25] -rw-r--r--. 2 boinc boinc    569681 Oct 14 06:38 input.tar.gz
[2025-10-14 07:41:25] -rw-r--r--. 2 boinc boinc 219517374 Oct 14 06:38 ATLAS.root_0
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc 198871701 Oct 14 07:39 HITS.pool.root.1
[2025-10-14 07:41:25] -rw-------. 1 boinc boinc    839680 Oct 14 07:41 result.tar.gz
07:41:26 (2767361): run_atlas exited; CPU time 19745.531325
07:41:26 (2767361): called boinc_finish(0)

</stderr_txt>
]]>

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