Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:33:56 (100059): wrapper (7.7.26015): starting
22:33:56 (100059): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 22:33:56] Arguments: --nthreads 6
[2025-10-13 22:33:56] Threads: 6
[2025-10-13 22:33:56] Checking for CVMFS
[2025-10-13 22:33:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 22:33:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 22:33:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 22:33:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 22:33:57] 2.12.7.0 249871 7376 94444 151662 2 188 14063851 20971521 929 130560 0 12577453 99.996 254135 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 22:33:57] CVMFS is ok
[2025-10-13 22:33:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 22:33:57] Checking for apptainer binary...
[2025-10-13 22:33:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 22:33:57] Running /usr/bin/apptainer --version
[2025-10-13 22:33:57] apptainer version 1.4.0-1.el9
[2025-10-13 22:33:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 22:33:57] testio005
[2025-10-13 22:33:57] apptainer works
[2025-10-13 22:33:57] Set ATHENA_PROC_NUMBER=6
[2025-10-13 22:33:57] Set ATHENA_CORE_NUMBER=6
[2025-10-13 22:33:57] Starting ATLAS job with PandaID=6841069757
[2025-10-13 22:33:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 00:05:22]  *** The last 200 lines of the pilot log: ***
[2025-10-14 00:05:22] 2025-10-13 15:04:08,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 00:05:22] 2025-10-13 15:04:09,057 | INFO     | time since job start (5401s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:10,832 | INFO     | monitor loop #419: job 0:6841069757 is in state 'finished'
[2025-10-14 00:05:22] 2025-10-13 15:04:10,833 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 00:05:22] 2025-10-13 15:04:11,062 | INFO     | time since job start (5403s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:13,068 | INFO     | time since job start (5405s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:13,335 | INFO     | monitor loop #420: job 0:6841069757 is in state 'finished'
[2025-10-14 00:05:22] 2025-10-13 15:04:13,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 00:05:22] 2025-10-13 15:04:15,072 | INFO     | time since job start (5407s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:15,838 | INFO     | monitor loop #421: job 0:6841069757 is in state 'finished'
[2025-10-14 00:05:22] 2025-10-13 15:04:15,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 00:05:22] 2025-10-13 15:04:17,077 | INFO     | time since job start (5409s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:18,341 | INFO     | monitor loop #422: job 0:6841069757 is in state 'finished'
[2025-10-14 00:05:22] 2025-10-13 15:04:18,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 00:05:22] 2025-10-13 15:04:19,083 | INFO     | time since job start (5411s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:20,844 | INFO     | monitor loop #423: job 0:6841069757 is in state 'finished'
[2025-10-14 00:05:22] 2025-10-13 15:04:20,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 00:05:22] 2025-10-13 15:04:21,088 | INFO     | time since job start (5413s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:22,208 | INFO     | PID=103859 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 00:05:22] 2025-10-13 15:04:22,208 | INFO     | .. there are 2 such processes running
[2025-10-14 00:05:22] 2025-10-13 15:04:23,208 | INFO     | time since job start (5415s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:23,348 | INFO     | monitor loop #424: job 0:6841069757 is in state 'finished'
[2025-10-14 00:05:22] 2025-10-13 15:04:23,348 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 00:05:22] 2025-10-13 15:04:25,214 | INFO     | time since job start (5417s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:25,851 | INFO     | monitor loop #425: job 0:6841069757 is in state 'finished'
[2025-10-14 00:05:22] 2025-10-13 15:04:25,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 00:05:22] 2025-10-13 15:04:27,219 | INFO     | time since job start (5419s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:28,354 | INFO     | monitor loop #426: job 0:6841069757 is in state 'finished'
[2025-10-14 00:05:22] 2025-10-13 15:04:28,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 00:05:22] 2025-10-13 15:04:29,225 | INFO     | time since job start (5421s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:30,857 | INFO     | monitor loop #427: job 0:6841069757 is in state 'finished'
[2025-10-14 00:05:22] 2025-10-13 15:04:30,857 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 00:05:22] 2025-10-13 15:04:31,230 | INFO     | time since job start (5423s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:33,235 | INFO     | time since job start (5425s) is within the limit (172800.0s)
[2025-10-14 00:05:22] 2025-10-13 15:04:33,334 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 00:05:22] 2025-10-13 15:04:33,337 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3315.2677499999995
[2025-10-14 00:05:22] 2025-10-13 15:04:33,339 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6841069757/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 00:05:22] 2025-10-13 15:04:33,339 | INFO     | extracted standard info from prmon json
[2025-10-14 00:05:22] 2025-10-13 15:04:33,339 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 00:05:22] 2025-10-13 15:04:33,339 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 00:05:22] 2025-10-13 15:04:33,340 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 00:05:22] 2025-10-13 15:04:33,340 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 00:05:22] 2025-10-13 15:04:33,341 | INFO     | fitting pss+swap vs Time
[2025-10-14 00:05:22] 2025-10-13 15:04:33,341 | INFO     | sum of square deviations: 164765880.0
[2025-10-14 00:05:22] 2025-10-13 15:04:33,341 | INFO     | sum of deviations: -6464645373.000001
[2025-10-14 00:05:22] 2025-10-13 15:04:33,341 | INFO     | mean x: 1760365216.0
[2025-10-14 00:05:22] 2025-10-13 15:04:33,341 | INFO     | mean y: 2499664.3703703703
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | -- intersect: 69071027981.0616
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | intersect: 69071027981.0616
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | chi2: 0.06428623434520832
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | -- intersect: 69071027981.0616
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | current memory leak: -39.24 B/s (using 81 data points, chi2=0.06)
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | could have reported an average CPU frequency of 3320 MHz (6 samples)
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | ..............................
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | . Timing measurements:
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | . get job = 0 s
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | . initial setup = 5 s
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | . payload setup = 4 s
[2025-10-14 00:05:22] 2025-10-13 15:04:33,342 | INFO     | . stage-in = 0 s
[2025-10-14 00:05:22] 2025-10-13 15:04:33,343 | INFO     | . payload execution = 5321 s
[2025-10-14 00:05:22] 2025-10-13 15:04:33,343 | INFO     | . stage-out = 0 s
[2025-10-14 00:05:22] 2025-10-13 15:04:33,343 | INFO     | . log creation = 0 s
[2025-10-14 00:05:22] 2025-10-13 15:04:33,343 | INFO     | ..............................
[2025-10-14 00:05:22] 2025-10-13 15:04:33,886 | INFO     | 
[2025-10-14 00:05:22] 2025-10-13 15:04:33,886 | INFO     | job summary report
[2025-10-14 00:05:22] 2025-10-13 15:04:33,886 | INFO     | --------------------------------------------------
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | PanDA job id: 6841069757
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | task id: 46676269
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | errors: (none)
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | pilot state: finished 
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | transexitcode: 0
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | exeerrorcode: 0
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | exeerrordiag: 
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | exitcode: 0
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | exitmsg: OK
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | cpuconsumptiontime: 29470 s
[2025-10-14 00:05:22] 2025-10-13 15:04:33,887 | INFO     | nevents: 400
[2025-10-14 00:05:22] 2025-10-13 15:04:33,888 | INFO     | neventsw: 0
[2025-10-14 00:05:22] 2025-10-13 15:04:33,888 | INFO     | pid: 110628
[2025-10-14 00:05:22] 2025-10-13 15:04:33,888 | INFO     | pgrp: 110628
[2025-10-14 00:05:22] 2025-10-13 15:04:33,888 | INFO     | corecount: 6
[2025-10-14 00:05:22] 2025-10-13 15:04:33,888 | INFO     | event service: False
[2025-10-14 00:05:22] 2025-10-13 15:04:33,888 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 11: 2349175, 5329: 2375717, 5330: 2384715, 5332: 2384899, 5410: 2385093}
[2025-10-14 00:05:22] 2025-10-13 15:04:33,888 | INFO     | --------------------------------------------------
[2025-10-14 00:05:22] 2025-10-13 15:04:33,888 | INFO     | 
[2025-10-14 00:05:22] 2025-10-13 15:04:33,888 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-14 00:05:22] 2025-10-13 15:04:33,904 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,904 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,904 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,904 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,904 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,904 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 00:05:22] 2025-10-13 15:04:33,905 | INFO     | job 6841069757 has completed (purged errors)
[2025-10-14 00:05:22] 2025-10-13 15:04:33,906 | INFO     | overall cleanup function is called
[2025-10-14 00:05:22] 2025-10-13 15:04:34,912 | INFO     | --- collectZombieJob: --- 10, [110628]
[2025-10-14 00:05:22] 2025-10-13 15:04:34,912 | INFO     | zombie collector waiting for pid 110628
[2025-10-14 00:05:22] 2025-10-13 15:04:34,913 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 00:05:22] 2025-10-13 15:04:34,913 | INFO     | collected zombie processes
[2025-10-14 00:05:22] 2025-10-13 15:04:34,913 | INFO     | will attempt to kill all subprocesses of pid=110628
[2025-10-14 00:05:22] 2025-10-13 15:04:34,989 | INFO     | process IDs to be killed: [110628] (in reverse order)
[2025-10-14 00:05:22] 2025-10-13 15:04:35,024 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 00:05:22] 2025-10-13 15:04:35,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 00:05:22] 2025-10-13 15:04:35,027 | INFO     | did not find any defunct processes belonging to 110628
[2025-10-14 00:05:22] 2025-10-13 15:04:35,029 | INFO     | did not find any defunct processes belonging to 110628
[2025-10-14 00:05:22] 2025-10-13 15:04:35,030 | INFO     | ready for new job
[2025-10-14 00:05:22] 2025-10-13 15:04:35,030 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 00:05:22] 2025-10-13 15:04:35,031 | INFO     | ***************************************
[2025-10-14 00:05:22] 2025-10-13 15:04:35,031 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 00:05:22] 2025-10-13 15:04:35,031 | INFO     | ***************************************
[2025-10-14 00:05:22] 2025-10-13 15:04:35,031 | INFO     | 
[2025-10-14 00:05:22] 2025-10-13 15:04:35,032 | INFO     | architecture information:
[2025-10-14 00:05:22] 2025-10-13 15:04:35,032 | INFO     | executing command: cat /etc/os-release
[2025-10-14 00:05:22] 2025-10-13 15:04:35,045 | INFO     | cat /etc/os-release:
[2025-10-14 00:05:22] NAME="CentOS Linux"
[2025-10-14 00:05:22] VERSION="7 (Core)"
[2025-10-14 00:05:22] ID="centos"
[2025-10-14 00:05:22] ID_LIKE="rhel fedora"
[2025-10-14 00:05:22] VERSION_ID="7"
[2025-10-14 00:05:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 00:05:22] ANSI_COLOR="0;31"
[2025-10-14 00:05:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 00:05:22] HOME_URL="https://www.centos.org/"
[2025-10-14 00:05:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 00:05:22] 
[2025-10-14 00:05:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 00:05:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 00:05:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 00:05:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 00:05:22] 
[2025-10-14 00:05:22] 2025-10-13 15:04:35,045 | INFO     | ***************************************
[2025-10-14 00:05:22] 2025-10-13 15:04:35,548 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-14 00:05:22] 2025-10-13 15:04:35,559 | INFO     | sufficient remaining disk space (98063876096 B)
[2025-10-14 00:05:22] 2025-10-13 15:04:35,559 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 00:05:22] 2025-10-13 15:04:35,559 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 00:05:22] 2025-10-13 15:04:35,559 | INFO     | update_server=False
[2025-10-14 00:05:22] 2025-10-13 15:04:35,560 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 00:05:22] 2025-10-13 15:04:35,868 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-14 00:05:22] 2025-10-13 15:04:35,868 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-14 00:05:22] 2025-10-13 15:04:35,868 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 00:05:22] 2025-10-13 15:04:35,868 | INFO     | will abort loop
[2025-10-14 00:05:22] 2025-10-13 15:04:36,276 | INFO     | all data control threads have been joined
[2025-10-14 00:05:22] 2025-10-13 15:04:36,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 00:05:22] 2025-10-13 15:04:36,565 | INFO     | [job] retrieve thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:36,578 | INFO     | all job control threads have been joined
[2025-10-14 00:05:22] 2025-10-13 15:04:36,604 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:36,689 | INFO     | all payload control threads have been joined
[2025-10-14 00:05:22] 2025-10-13 15:04:36,740 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:36,874 | INFO     | [job] job monitor thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:37,045 | INFO     | [payload] validate_post thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:37,276 | INFO     | [data] copytool_in thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:37,281 | INFO     | [data] control thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:37,527 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:37,583 | INFO     | [job] control thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:37,691 | INFO     | [payload] control thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:37,905 | INFO     | [job] validate thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:37,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 00:05:22] 2025-10-13 15:04:37,925 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:38,152 | INFO     | [payload] failed_post thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:38,363 | INFO     | [data] copytool_out thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:38,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 00:05:22] 2025-10-13 15:04:39,419 | INFO     | [job] queue monitor thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:04:41,912 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 00:05:22] 2025-10-13 15:05:06,413 | INFO     | PID=103859 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 00:05:22] 2025-10-13 15:05:06,413 | INFO     | .. there are 2 such processes running
[2025-10-14 00:05:22] 2025-10-13 15:05:06,414 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 00:05:22] 2025-10-13 15:05:06,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 00:05:22] 2025-10-13 15:05:06,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 00:05:22] 2025-10-13 15:05:15,538 | INFO     | [monitor] cgroup control has ended
[2025-10-14 00:05:22] 2025-10-13 15:05:17,176 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140158775174976)>', '<ExcThread(monitor, started 140158431110912)>']
[2025-10-14 00:05:22] 2025-10-13 15:05:17,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 00:05:22] 2025-10-13 15:05:17,468 | INFO     | [monitor] control thread has ended
[2025-10-14 00:05:22] 2025-10-13 15:05:22,201 | INFO     | all workflow threads have been joined
[2025-10-14 00:05:22] 2025-10-13 15:05:22,201 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 00:05:22] 2025-10-13 15:05:22,201 | INFO     | traces error code: 0
[2025-10-14 00:05:22] 2025-10-13 15:05:22,202 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 00:05:22] 2025-10-13 15:05:22,281 [wrapper] ==== pilot stdout END ====
[2025-10-14 00:05:22] 2025-10-13 15:05:22,283 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 00:05:22] 2025-10-13 15:05:22,285 [wrapper] pilotpid: 103859
[2025-10-14 00:05:22] 2025-10-13 15:05:22,287 [wrapper] Pilot exit status: 0
[2025-10-14 00:05:22] 2025-10-13 15:05:22,295 [wrapper] pandaids: 6841069757
[2025-10-14 00:05:22] 2025-10-13 15:05:22,325 [wrapper] cleanup supervisor_pilot  149167 103860
[2025-10-14 00:05:22] 2025-10-13 15:05:22,327 [wrapper] Test setup, not cleaning
[2025-10-14 00:05:22] 2025-10-13 15:05:22,329 [wrapper] apfmon messages muted
[2025-10-14 00:05:22] 2025-10-13 15:05:22,331 [wrapper] ==== wrapper stdout END ====
[2025-10-14 00:05:22] 2025-10-13 15:05:22,333 [wrapper] ==== wrapper stderr END ====
[2025-10-14 00:05:22]  *** Error codes and diagnostics ***
[2025-10-14 00:05:22]     "exeErrorCode": 0,
[2025-10-14 00:05:22]     "exeErrorDiag": "",
[2025-10-14 00:05:22]     "pilotErrorCode": 0,
[2025-10-14 00:05:22]     "pilotErrorDiag": "",
[2025-10-14 00:05:22]  *** Listing of results directory ***
[2025-10-14 00:05:22] total 412120
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc    557409 Oct 13 09:48 pilot3.tar.gz
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc      5112 Oct 13 10:06 queuedata.json
[2025-10-14 00:05:22] -rwx------. 1 boinc boinc     36292 Oct 13 10:06 runpilot2-wrapper.sh
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc       100 Oct 13 22:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 00:05:22] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 22:33 run_atlas
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc       105 Oct 13 22:33 job.xml
[2025-10-14 00:05:22] -rw-r--r--. 2 boinc boinc 221180067 Oct 13 22:33 EVNT.46676267._004718.pool.root.1
[2025-10-14 00:05:22] -rw-r--r--. 2 boinc boinc     15120 Oct 13 22:33 start_atlas.sh
[2025-10-14 00:05:22] drwxrwx--x. 2 boinc boinc        68 Oct 13 22:33 shared
[2025-10-14 00:05:22] -rw-r--r--. 2 boinc boinc    569682 Oct 13 22:33 input.tar.gz
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc      9362 Oct 13 22:33 init_data.xml
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc         0 Oct 13 22:33 boinc_lockfile
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc      2550 Oct 13 22:33 pandaJob.out
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc    972489 Oct 13 22:34 agis_schedconf.cvmfs.json
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc   1560580 Oct 13 22:34 agis_ddmendpoints.agis.ALL.json
[2025-10-14 00:05:22] drwx------. 5 boinc boinc      4096 Oct 13 22:34 pilot3
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc 194721011 Oct 14 00:02 HITS.46676269._093797.pool.root.1
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc       529 Oct 14 00:02 boinc_task_state.xml
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc      1014 Oct 14 00:03 memory_monitor_summary.json
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc    315582 Oct 14 00:03 log.46676269._093797.job.log.tgz.1
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc      7751 Oct 14 00:04 heartbeat.json
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc      8192 Oct 14 00:04 boinc_mmap_file
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc        27 Oct 14 00:05 wrapper_checkpoint.txt
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc        95 Oct 14 00:05 pilot_heartbeat.json
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc      5008 Oct 14 00:05 pilotlog.txt
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc    791526 Oct 14 00:05 log.46676269._093797.job.log.1
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc       357 Oct 14 00:05 output.list
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc       620 Oct 14 00:05 runtime_log
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc   1126400 Oct 14 00:05 result.tar.gz
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc      8661 Oct 14 00:05 runtime_log.err
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc       642 Oct 14 00:05 OAwKDmSCMS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWKmNDmgEBZ6m.diag
[2025-10-14 00:05:22] -rw-r--r--. 1 boinc boinc     21955 Oct 14 00:05 stderr.txt
[2025-10-14 00:05:22] HITS file was successfully produced:
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc 194721011 Oct 14 00:02 shared/HITS.pool.root.1
[2025-10-14 00:05:22]  *** Contents of shared directory: ***
[2025-10-14 00:05:22] total 407836
[2025-10-14 00:05:22] -rw-r--r--. 2 boinc boinc 221180067 Oct 13 22:33 ATLAS.root_0
[2025-10-14 00:05:22] -rw-r--r--. 2 boinc boinc     15120 Oct 13 22:33 start_atlas.sh
[2025-10-14 00:05:22] -rw-r--r--. 2 boinc boinc    569682 Oct 13 22:33 input.tar.gz
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc 194721011 Oct 14 00:02 HITS.pool.root.1
[2025-10-14 00:05:22] -rw-------. 1 boinc boinc   1126400 Oct 14 00:05 result.tar.gz
00:05:23 (100059): run_atlas exited; CPU time 29528.098972
00:05:23 (100059): called boinc_finish(0)

</stderr_txt>
]]>

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