Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:59:34 (21809): wrapper (7.7.26015): starting
01:59:34 (21809): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 01:59:34] Arguments: --nthreads 12
[2025-10-13 01:59:34] Threads: 12
[2025-10-13 01:59:34] Checking for CVMFS
[2025-10-13 01:59:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:59:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:59:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:59:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:59:34] 2.11.2.0 2979 223933 104164 151650 3 57 16413355 20275201 1 130560 2 109696726 99.984 13077004 12031 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 01:59:34] CVMFS is ok
[2025-10-13 01:59:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:59:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:59:34] Further information can be found at the LHC@home message board.
[2025-10-13 01:59:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:59:34] Checking for apptainer binary...
[2025-10-13 01:59:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:59:34] Running /usr/bin/apptainer --version
[2025-10-13 01:59:34] apptainer version 1.3.2-1.el7
[2025-10-13 01:59:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:59:36] c-205-7.aglt2.org
[2025-10-13 01:59:36] apptainer works
[2025-10-13 01:59:36] Set ATHENA_PROC_NUMBER=12
[2025-10-13 01:59:36] Set ATHENA_CORE_NUMBER=12
[2025-10-13 01:59:36] Starting ATLAS job with PandaID=6841070180
[2025-10-13 01:59:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:14:05]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:14:05]  replicas=None
[2025-10-13 03:14:05]  scope=mc23_13p6TeV
[2025-10-13 03:14:05]  status=None
[2025-10-13 03:14:05]  status_code=0
[2025-10-13 03:14:05]  storage_token=
[2025-10-13 03:14:05]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841070180/log.46676269._093985.job.log.tgz.1
[2025-10-13 03:14:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/a9/log.46676269._093985.job.log.tgz.1
[2025-10-13 03:14:05]  workdir=None
[2025-10-13 03:14:05] ]
[2025-10-13 03:14:05] 2025-10-13 07:12:49,947 | INFO     | transferring file log.46676269._093985.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841070180/log.46676269._093985.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 03:14:05] 2025-10-13 07:12:49,948 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841070180/log.46676269._093985.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._093985.job
[2025-10-13 03:14:05] 2025-10-13 07:12:49,970 | INFO     | adding to output.list: log.46676269._093985.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/a9/log.46676269._093985.job.log.tg
[2025-10-13 03:14:05] 2025-10-13 07:12:49,971 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 03:14:05] 2025-10-13 07:12:49,971 | INFO     | summary of transferred files:
[2025-10-13 03:14:05] 2025-10-13 07:12:49,971 | INFO     |  -- lfn=log.46676269._093985.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 03:14:05] 2025-10-13 07:12:49,972 | INFO     | stage-out finished correctly
[2025-10-13 03:14:05] 2025-10-13 07:12:51,172 | INFO     | time since job start (4380s) is within the limit (172800.0s)
[2025-10-13 03:14:05] 2025-10-13 07:12:51,736 | INFO     | monitor loop #325: job 0:6841070180 is in state 'finished'
[2025-10-13 03:14:05] 2025-10-13 07:12:51,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:14:05] 2025-10-13 07:12:52,570 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 03:14:05] 2025-10-13 07:12:53,178 | INFO     | time since job start (4382s) is within the limit (172800.0s)
[2025-10-13 03:14:05] 2025-10-13 07:12:53,178 | INFO     | 4384s have passed since pilot start - server update state is 'RUNNING'
[2025-10-13 03:14:05] 2025-10-13 07:12:53,629 | INFO     | job 6841070180 has state=finished
[2025-10-13 03:14:05] 2025-10-13 07:12:53,629 | INFO     | preparing for final server update for job 6841070180 in state='finished'
[2025-10-13 03:14:05] 2025-10-13 07:12:53,630 | INFO     | this job has now completed (state=finished)
[2025-10-13 03:14:05] 2025-10-13 07:12:53,630 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 03:14:05] 2025-10-13 07:12:53,630 | INFO     | log transfer has been attempted: DONE
[2025-10-13 03:14:05] 2025-10-13 07:12:53,630 | INFO     | job 6841070180 has finished - writing final server update
[2025-10-13 03:14:05] 2025-10-13 07:12:53,631 | INFO     | total number of processed events: 400 (read)
[2025-10-13 03:14:05] 2025-10-13 07:12:53,632 | INFO     | executing command: lscpu
[2025-10-13 03:14:05] 2025-10-13 07:12:53,657 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 03:14:05] 2025-10-13 07:12:54,239 | INFO     | monitor loop #326: job 0:6841070180 is in state 'finished'
[2025-10-13 03:14:05] 2025-10-13 07:12:54,239 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:14:05] 2025-10-13 07:12:55,183 | INFO     | time since job start (4384s) is within the limit (172800.0s)
[2025-10-13 03:14:05] 2025-10-13 07:12:56,742 | INFO     | monitor loop #327: job 0:6841070180 is in state 'finished'
[2025-10-13 03:14:05] 2025-10-13 07:12:56,742 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:14:05] 2025-10-13 07:12:57,189 | INFO     | time since job start (4386s) is within the limit (172800.0s)
[2025-10-13 03:14:05] 2025-10-13 07:12:58,293 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 03:14:05] 2025-10-13 07:12:58,297 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-13 03:14:05] 2025-10-13 07:12:58,298 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841070180/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:14:05] 2025-10-13 07:12:58,299 | INFO     | extracted standard info from prmon json
[2025-10-13 03:14:05] 2025-10-13 07:12:58,299 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:14:05] 2025-10-13 07:12:58,299 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:14:05] 2025-10-13 07:12:58,300 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:14:05] 2025-10-13 07:12:58,300 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:14:05] 2025-10-13 07:12:58,301 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:14:05] 2025-10-13 07:12:58,301 | INFO     | sum of square deviations: 85136480.0
[2025-10-13 03:14:05] 2025-10-13 07:12:58,302 | INFO     | sum of deviations: -8364454322.0
[2025-10-13 03:14:05] 2025-10-13 07:12:58,302 | INFO     | mean x: 1760337477.0
[2025-10-13 03:14:05] 2025-10-13 07:12:58,302 | INFO     | mean y: 2802116.9076923076
[2025-10-13 03:14:05] 2025-10-13 07:12:58,302 | INFO     | -- intersect: 172951723867.8566
[2025-10-13 03:14:05] 2025-10-13 07:12:58,302 | INFO     | intersect: 172951723867.8566
[2025-10-13 03:14:05] 2025-10-13 07:12:58,302 | INFO     | chi2: 0.05471364925551787
[2025-10-13 03:14:05] 2025-10-13 07:12:58,303 | INFO     | -- intersect: 172951723867.8566
[2025-10-13 03:14:05] 2025-10-13 07:12:58,303 | INFO     | current memory leak: -98.25 B/s (using 65 data points, chi2=0.05)
[2025-10-13 03:14:05] 2025-10-13 07:12:58,303 | INFO     | could have reported an average CPU frequency of 2047 MHz (6 samples)
[2025-10-13 03:14:05] 2025-10-13 07:12:58,303 | INFO     | ..............................
[2025-10-13 03:14:05] 2025-10-13 07:12:58,303 | INFO     | . Timing measurements:
[2025-10-13 03:14:05] 2025-10-13 07:12:58,303 | INFO     | . get job = 0 s
[2025-10-13 03:14:05] 2025-10-13 07:12:58,303 | INFO     | . initial setup = 2 s
[2025-10-13 03:14:05] 2025-10-13 07:12:58,304 | INFO     | . payload setup = 7 s
[2025-10-13 03:14:05] 2025-10-13 07:12:58,304 | INFO     | . stage-in = 0 s
[2025-10-13 03:14:05] 2025-10-13 07:12:58,304 | INFO     | . payload execution = 4349 s
[2025-10-13 03:14:05] 2025-10-13 07:12:58,304 | INFO     | . stage-out = 0 s
[2025-10-13 03:14:05] 2025-10-13 07:12:58,304 | INFO     | . log creation = 0 s
[2025-10-13 03:14:05] 2025-10-13 07:12:58,304 | INFO     | ..............................
[2025-10-13 03:14:05] 2025-10-13 07:12:58,387 | INFO     | 
[2025-10-13 03:14:05] 2025-10-13 07:12:58,387 | INFO     | job summary report
[2025-10-13 03:14:05] 2025-10-13 07:12:58,387 | INFO     | --------------------------------------------------
[2025-10-13 03:14:05] 2025-10-13 07:12:58,388 | INFO     | PanDA job id: 6841070180
[2025-10-13 03:14:05] 2025-10-13 07:12:58,388 | INFO     | task id: 46676269
[2025-10-13 03:14:05] 2025-10-13 07:12:58,388 | INFO     | errors: (none)
[2025-10-13 03:14:05] 2025-10-13 07:12:58,388 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:14:05] 2025-10-13 07:12:58,388 | INFO     | pilot state: finished 
[2025-10-13 03:14:05] 2025-10-13 07:12:58,389 | INFO     | transexitcode: 0
[2025-10-13 03:14:05] 2025-10-13 07:12:58,389 | INFO     | exeerrorcode: 0
[2025-10-13 03:14:05] 2025-10-13 07:12:58,389 | INFO     | exeerrordiag: 
[2025-10-13 03:14:05] 2025-10-13 07:12:58,389 | INFO     | exitcode: 0
[2025-10-13 03:14:05] 2025-10-13 07:12:58,389 | INFO     | exitmsg: OK
[2025-10-13 03:14:05] 2025-10-13 07:12:58,389 | INFO     | cpuconsumptiontime: 46748 s
[2025-10-13 03:14:05] 2025-10-13 07:12:58,390 | INFO     | nevents: 400
[2025-10-13 03:14:05] 2025-10-13 07:12:58,390 | INFO     | neventsw: 0
[2025-10-13 03:14:05] 2025-10-13 07:12:58,390 | INFO     | pid: 32052
[2025-10-13 03:14:05] 2025-10-13 07:12:58,390 | INFO     | pgrp: 32052
[2025-10-13 03:14:05] 2025-10-13 07:12:58,390 | INFO     | corecount: 12
[2025-10-13 03:14:05] 2025-10-13 07:12:58,391 | INFO     | event service: False
[2025-10-13 03:14:05] 2025-10-13 07:12:58,391 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4360: 2375223, 4362: 2384221, 4365: 2384277, 4370: 2384599}
[2025-10-13 03:14:05] 2025-10-13 07:12:58,391 | INFO     | --------------------------------------------------
[2025-10-13 03:14:05] 2025-10-13 07:12:58,391 | INFO     | 
[2025-10-13 03:14:05] 2025-10-13 07:12:58,391 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 03:14:05] 2025-10-13 07:12:58,414 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,415 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,415 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,415 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,415 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,415 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,415 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,416 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,416 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,416 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,416 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,416 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,416 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,417 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,417 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,417 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,417 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,417 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:14:05] 2025-10-13 07:12:58,417 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,418 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:14:05] 2025-10-13 07:12:58,418 | INFO     | job 6841070180 has completed (purged errors)
[2025-10-13 03:14:05] 2025-10-13 07:12:58,418 | INFO     | overall cleanup function is called
[2025-10-13 03:14:05] 2025-10-13 07:12:59,426 | INFO     | --- collectZombieJob: --- 10, [32052]
[2025-10-13 03:14:05] 2025-10-13 07:12:59,426 | INFO     | zombie collector waiting for pid 32052
[2025-10-13 03:14:05] 2025-10-13 07:12:59,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:14:05] 2025-10-13 07:12:59,426 | INFO     | collected zombie processes
[2025-10-13 03:14:05] 2025-10-13 07:12:59,427 | INFO     | will attempt to kill all subprocesses of pid=32052
[2025-10-13 03:14:05] 2025-10-13 07:12:59,521 | INFO     | process IDs to be killed: [32052] (in reverse order)
[2025-10-13 03:14:05] 2025-10-13 07:12:59,575 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:14:05] 2025-10-13 07:12:59,575 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:14:05] 2025-10-13 07:12:59,578 | INFO     | did not find any defunct processes belonging to 32052
[2025-10-13 03:14:05] 2025-10-13 07:12:59,581 | INFO     | did not find any defunct processes belonging to 32052
[2025-10-13 03:14:05] 2025-10-13 07:12:59,582 | INFO     | ready for new job
[2025-10-13 03:14:05] 2025-10-13 07:12:59,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:14:05] 2025-10-13 07:12:59,583 | INFO     | ***************************************
[2025-10-13 03:14:05] 2025-10-13 07:12:59,583 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:14:05] 2025-10-13 07:12:59,583 | INFO     | ***************************************
[2025-10-13 03:14:05] 2025-10-13 07:12:59,584 | INFO     | 
[2025-10-13 03:14:05] 2025-10-13 07:12:59,584 | INFO     | architecture information:
[2025-10-13 03:14:05] 2025-10-13 07:12:59,585 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:14:05] 2025-10-13 07:12:59,600 | INFO     | cat /etc/os-release:
[2025-10-13 03:14:05] NAME="CentOS Linux"
[2025-10-13 03:14:05] VERSION="7 (Core)"
[2025-10-13 03:14:05] ID="centos"
[2025-10-13 03:14:05] ID_LIKE="rhel fedora"
[2025-10-13 03:14:05] VERSION_ID="7"
[2025-10-13 03:14:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:14:05] ANSI_COLOR="0;31"
[2025-10-13 03:14:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:14:05] HOME_URL="https://www.centos.org/"
[2025-10-13 03:14:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:14:05] 
[2025-10-13 03:14:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:14:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:14:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:14:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:14:05] 
[2025-10-13 03:14:05] 2025-10-13 07:12:59,600 | INFO     | ***************************************
[2025-10-13 03:14:05] 2025-10-13 07:13:00,104 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 03:14:05] 2025-10-13 07:13:00,121 | INFO     | sufficient remaining disk space (29354885120 B)
[2025-10-13 03:14:05] 2025-10-13 07:13:00,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:14:05] 2025-10-13 07:13:00,122 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:14:05] 2025-10-13 07:13:00,122 | INFO     | update_server=False
[2025-10-13 03:14:05] 2025-10-13 07:13:00,122 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:14:05] 2025-10-13 07:13:00,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:14:05] 2025-10-13 07:13:00,250 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:14:05] 2025-10-13 07:13:00,251 | INFO     | aborting loop
[2025-10-13 03:14:05] 2025-10-13 07:13:00,571 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:14:05] 2025-10-13 07:13:00,588 | INFO     | all data control threads have been joined
[2025-10-13 03:14:05] 2025-10-13 07:13:00,642 | INFO     | all payload control threads have been joined
[2025-10-13 03:14:05] 2025-10-13 07:13:01,128 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:01,128 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:01,256 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:01,521 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:01,594 | INFO     | [data] control thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:01,600 | INFO     | all job control threads have been joined
[2025-10-13 03:14:05] 2025-10-13 07:13:01,648 | INFO     | [payload] control thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:01,692 | INFO     | [job] validate thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:01,810 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:01,892 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:02,147 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:02,164 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:02,257 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:02,546 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:02,576 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:02,605 | INFO     | [job] control thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:03,160 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:14:05] 2025-10-13 07:13:07,165 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:14:05] 2025-10-13 07:13:30,374 | INFO     | PID=25483 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 03:14:05] 2025-10-13 07:13:30,374 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:14:05] 2025-10-13 07:13:30,374 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:14:05] 2025-10-13 07:13:30,374 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:14:05] 2025-10-13 07:13:57,737 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:14:05] 2025-10-13 07:13:59,762 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139934667519808)>', '<ExcThread(monitor, started 139933759026944)>']
[2025-10-13 03:14:05] 2025-10-13 07:14:00,499 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:14:05] 2025-10-13 07:14:00,499 | INFO     | [monitor] control thread has ended
[2025-10-13 03:14:05] 2025-10-13 07:14:04,788 | INFO     | all workflow threads have been joined
[2025-10-13 03:14:05] 2025-10-13 07:14:04,788 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:14:05] 2025-10-13 07:14:04,796 | INFO     | traces error code: 0
[2025-10-13 03:14:05] 2025-10-13 07:14:04,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:14:05] 2025-10-13 07:14:04,896 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:14:05] 2025-10-13 07:14:04,900 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:14:05] 2025-10-13 07:14:04,904 [wrapper] pilotpid: 25483
[2025-10-13 03:14:05] 2025-10-13 07:14:04,908 [wrapper] Pilot exit status: 0
[2025-10-13 03:14:05] 2025-10-13 07:14:04,923 [wrapper] pandaids: 6841070180
[2025-10-13 03:14:05] 2025-10-13 07:14:04,968 [wrapper] cleanup supervisor_pilot  8093 25484
[2025-10-13 03:14:05] 2025-10-13 07:14:04,972 [wrapper] Test setup, not cleaning
[2025-10-13 03:14:05] 2025-10-13 07:14:04,976 [wrapper] apfmon messages muted
[2025-10-13 03:14:05] 2025-10-13 07:14:04,980 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:14:05] 2025-10-13 07:14:04,984 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:14:05]  *** Error codes and diagnostics ***
[2025-10-13 03:14:05]     "exeErrorCode": 0,
[2025-10-13 03:14:05]     "exeErrorDiag": "",
[2025-10-13 03:14:05]     "pilotErrorCode": 0,
[2025-10-13 03:14:05]     "pilotErrorDiag": "",
[2025-10-13 03:14:05]  *** Listing of results directory ***
[2025-10-13 03:14:05] total 417784
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 21:18 pilot3.tar.gz
[2025-10-13 03:14:05] -rwx------ 1 boincer umatlas     36292 Oct 12 21:19 runpilot2-wrapper.sh
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 21:19 queuedata.json
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas       100 Oct 13 01:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:14:05] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 01:59 run_atlas
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas       105 Oct 13 01:59 job.xml
[2025-10-13 03:14:05] -rw-r--r-- 2 boincer umatlas 224971093 Oct 13 01:59 EVNT.46676267._004726.pool.root.1
[2025-10-13 03:14:05] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:59 start_atlas.sh
[2025-10-13 03:14:05] drwxrwx--x 2 boincer umatlas      4096 Oct 13 01:59 shared
[2025-10-13 03:14:05] -rw-r--r-- 2 boincer umatlas    569677 Oct 13 01:59 input.tar.gz
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas         0 Oct 13 01:59 boinc_lockfile
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 01:59 pandaJob.out
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas    973230 Oct 13 01:59 agis_schedconf.cvmfs.json
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas   1560580 Oct 13 01:59 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:14:05] drwx------ 5 boincer umatlas      4096 Oct 13 01:59 pilot3
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 03:10 init_data.xml
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas       529 Oct 13 03:12 boinc_task_state.xml
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas 196907468 Oct 13 03:12 HITS.46676269._093985.pool.root.1
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas      1050 Oct 13 03:12 memory_monitor_summary.json
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas    378602 Oct 13 03:12 log.46676269._093985.job.log.tgz.1
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas        95 Oct 13 03:12 pilot_heartbeat.json
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas      7858 Oct 13 03:12 heartbeat.json
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 03:13 boinc_mmap_file
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas        27 Oct 13 03:13 wrapper_checkpoint.txt
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas      4746 Oct 13 03:14 pilotlog.txt
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas    637087 Oct 13 03:14 log.46676269._093985.job.log.1
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas       357 Oct 13 03:14 output.list
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas       620 Oct 13 03:14 runtime_log
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas   1034240 Oct 13 03:14 result.tar.gz
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas       658 Oct 13 03:14 A7GNDmUOMS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmfRVMDmcirQjn.diag
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas      8700 Oct 13 03:14 runtime_log.err
[2025-10-13 03:14:05] -rw-r--r-- 1 boincer umatlas     21850 Oct 13 03:14 stderr.txt
[2025-10-13 03:14:05] HITS file was successfully produced:
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas 196907468 Oct 13 03:12 shared/HITS.pool.root.1
[2025-10-13 03:14:05]  *** Contents of shared directory: ***
[2025-10-13 03:14:05] total 413588
[2025-10-13 03:14:05] -rw-r--r-- 2 boincer umatlas 224971093 Oct 13 01:59 ATLAS.root_0
[2025-10-13 03:14:05] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:59 start_atlas.sh
[2025-10-13 03:14:05] -rw-r--r-- 2 boincer umatlas    569677 Oct 13 01:59 input.tar.gz
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas 196907468 Oct 13 03:12 HITS.pool.root.1
[2025-10-13 03:14:05] -rw------- 1 boincer umatlas   1034240 Oct 13 03:14 result.tar.gz
03:14:06 (21809): run_atlas exited; CPU time 46730.928726
03:14:06 (21809): called boinc_finish(0)

</stderr_txt>
]]>

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