Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:51:28 (3296093): wrapper (7.7.26015): starting
14:51:28 (3296093): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 14:51:28] Arguments: --nthreads 8
[2025-10-13 14:51:28] Threads: 8
[2025-10-13 14:51:28] Checking for CVMFS
[2025-10-13 14:51:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:51:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:51:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:51:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:51:28] 2.10.1.0 2217956 2839 72588 151661 0 57 2580326 4097025 0 130560 0 2974576 99.992 98808 22677 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-13 14:51:28] CVMFS is ok
[2025-10-13 14:51:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:51:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:51:29] Further information can be found at the LHC@home message board.
[2025-10-13 14:51:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:51:29] Checking for apptainer binary...
[2025-10-13 14:51:29] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2025-10-13 14:51:29] apptainer is not installed, using version from CVMFS
[2025-10-13 14:51:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:51:29] pckeatlas04
[2025-10-13 14:51:29] apptainer works
[2025-10-13 14:51:29] Set ATHENA_PROC_NUMBER=8
[2025-10-13 14:51:29] Set ATHENA_CORE_NUMBER=8
[2025-10-13 14:51:29] Starting ATLAS job with PandaID=6840961694
[2025-10-13 14:51:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:10:46]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:10:46]  scope=mc23_13p6TeV
[2025-10-13 16:10:46]  status=None
[2025-10-13 16:10:46]  status_code=0
[2025-10-13 16:10:46]  storage_token=
[2025-10-13 16:10:46]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6840961694/log.46676269._091953.job.log.tgz.1
[2025-10-13 16:10:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/78/log.46676269._091953.job.log.tgz.1
[2025-10-13 16:10:46]  workdir=None
[2025-10-13 16:10:46] ]
[2025-10-13 16:10:46] 2025-10-13 14:09:55,875 | INFO     | transferring file log.46676269._091953.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6840961694/log.46676269._091953.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 16:10:46] 2025-10-13 14:09:55,875 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6840961694/log.46676269._091953.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._091953.job
[2025-10-13 16:10:46] 2025-10-13 14:09:55,883 | INFO     | adding to output.list: log.46676269._091953.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/78/log.46676269._091953.job.log.tg
[2025-10-13 16:10:46] 2025-10-13 14:09:55,884 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 16:10:46] 2025-10-13 14:09:55,884 | INFO     | summary of transferred files:
[2025-10-13 16:10:46] 2025-10-13 14:09:55,884 | INFO     |  -- lfn=log.46676269._091953.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 16:10:46] 2025-10-13 14:09:55,884 | INFO     | stage-out finished correctly
[2025-10-13 16:10:46] 2025-10-13 14:09:55,920 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 16:10:46] 2025-10-13 14:09:55,978 | INFO     | time since job start (4702s) is within the limit (172800.0s)
[2025-10-13 16:10:46] 2025-10-13 14:09:57,498 | INFO     | job 6840961694 has state=finished
[2025-10-13 16:10:46] 2025-10-13 14:09:57,498 | INFO     | preparing for final server update for job 6840961694 in state='finished'
[2025-10-13 16:10:46] 2025-10-13 14:09:57,498 | INFO     | this job has now completed (state=finished)
[2025-10-13 16:10:46] 2025-10-13 14:09:57,498 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 16:10:46] 2025-10-13 14:09:57,498 | INFO     | log transfer has been attempted: DONE
[2025-10-13 16:10:46] 2025-10-13 14:09:57,499 | INFO     | job 6840961694 has finished - writing final server update
[2025-10-13 16:10:46] 2025-10-13 14:09:57,499 | INFO     | total number of processed events: 400 (read)
[2025-10-13 16:10:46] 2025-10-13 14:09:57,500 | INFO     | executing command: lscpu
[2025-10-13 16:10:46] 2025-10-13 14:09:57,507 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 16:10:46] 2025-10-13 14:09:57,983 | INFO     | time since job start (4704s) is within the limit (172800.0s)
[2025-10-13 16:10:46] 2025-10-13 14:09:59,148 | WARNING  | process 3307022 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 16:10:46] 2025-10-13 14:09:59,148 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840961694/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:10:46] 2025-10-13 14:09:59,190 | INFO     | number of running child processes to parent process 3307022: 1
[2025-10-13 16:10:46] 2025-10-13 14:09:59,190 | INFO     | maximum number of monitored processes: 6
[2025-10-13 16:10:46] 2025-10-13 14:09:59,988 | INFO     | time since job start (4706s) is within the limit (172800.0s)
[2025-10-13 16:10:46] 2025-10-13 14:10:01,693 | INFO     | monitor loop #357: job 0:6840961694 is in state 'finished'
[2025-10-13 16:10:46] 2025-10-13 14:10:01,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:10:46] 2025-10-13 14:10:01,993 | INFO     | time since job start (4708s) is within the limit (172800.0s)
[2025-10-13 16:10:46] 2025-10-13 14:10:02,502 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 16:10:46] 2025-10-13 14:10:02,502 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3842.13
[2025-10-13 16:10:46] 2025-10-13 14:10:02,503 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840961694/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:10:46] 2025-10-13 14:10:02,503 | INFO     | extracted standard info from prmon json
[2025-10-13 16:10:46] 2025-10-13 14:10:02,504 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 16:10:46] 2025-10-13 14:10:02,504 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 16:10:46] 2025-10-13 14:10:02,504 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 16:10:46] 2025-10-13 14:10:02,504 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | fitting pss+swap vs Time
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | sum of square deviations: 106336877.5
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | sum of deviations: -10496626911.0
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | mean x: 1760362320.5
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | mean y: 2692899.3714285716
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | -- intersect: 173769940357.53293
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | intersect: 173769940357.53293
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | chi2: 0.1294833868600213
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | -- intersect: 173769940357.53293
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | current memory leak: -98.71 B/s (using 70 data points, chi2=0.13)
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | could have reported an average CPU frequency of 3756 MHz (6 samples)
[2025-10-13 16:10:46] 2025-10-13 14:10:02,505 | INFO     | ..............................
[2025-10-13 16:10:46] 2025-10-13 14:10:02,506 | INFO     | . Timing measurements:
[2025-10-13 16:10:46] 2025-10-13 14:10:02,506 | INFO     | . get job = 0 s
[2025-10-13 16:10:46] 2025-10-13 14:10:02,506 | INFO     | . initial setup = 0 s
[2025-10-13 16:10:46] 2025-10-13 14:10:02,506 | INFO     | . payload setup = 3 s
[2025-10-13 16:10:46] 2025-10-13 14:10:02,506 | INFO     | . stage-in = 0 s
[2025-10-13 16:10:46] 2025-10-13 14:10:02,506 | INFO     | . payload execution = 4682 s
[2025-10-13 16:10:46] 2025-10-13 14:10:02,506 | INFO     | . stage-out = 0 s
[2025-10-13 16:10:46] 2025-10-13 14:10:02,506 | INFO     | . log creation = 0 s
[2025-10-13 16:10:46] 2025-10-13 14:10:02,506 | INFO     | ..............................
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | 
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | job summary report
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | --------------------------------------------------
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | PanDA job id: 6840961694
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | task id: 46676269
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | errors: (none)
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | pilot state: finished 
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | transexitcode: 0
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | exeerrorcode: 0
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | exeerrordiag: 
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | exitcode: 0
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | exitmsg: OK
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | cpuconsumptiontime: 35539 s
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | nevents: 400
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | neventsw: 0
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | pid: 3307022
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | pgrp: 3307022
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | corecount: 8
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | event service: False
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | sizes: {0: 2348857, 2: 2349119, 10: 2349147, 4689: 2375432, 4690: 2384486, 4697: 2384624}
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | --------------------------------------------------
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | 
[2025-10-13 16:10:46] 2025-10-13 14:10:02,543 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,553 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,553 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,553 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,553 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,553 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 16:10:46] 2025-10-13 14:10:02,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:10:46] 2025-10-13 14:10:02,553 | INFO     | job 6840961694 has completed (purged errors)
[2025-10-13 16:10:46] 2025-10-13 14:10:02,553 | INFO     | overall cleanup function is called
[2025-10-13 16:10:46] 2025-10-13 14:10:03,559 | INFO     | --- collectZombieJob: --- 10, [3307022]
[2025-10-13 16:10:46] 2025-10-13 14:10:03,559 | INFO     | zombie collector waiting for pid 3307022
[2025-10-13 16:10:46] 2025-10-13 14:10:03,559 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:10:46] 2025-10-13 14:10:03,559 | INFO     | collected zombie processes
[2025-10-13 16:10:46] 2025-10-13 14:10:03,559 | INFO     | will attempt to kill all subprocesses of pid=3307022
[2025-10-13 16:10:46] 2025-10-13 14:10:03,603 | INFO     | process IDs to be killed: [3307022] (in reverse order)
[2025-10-13 16:10:46] 2025-10-13 14:10:03,621 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:10:46] 2025-10-13 14:10:03,622 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:10:46] 2025-10-13 14:10:03,623 | INFO     | did not find any defunct processes belonging to 3307022
[2025-10-13 16:10:46] 2025-10-13 14:10:03,624 | INFO     | did not find any defunct processes belonging to 3307022
[2025-10-13 16:10:46] 2025-10-13 14:10:03,624 | INFO     | ready for new job
[2025-10-13 16:10:46] 2025-10-13 14:10:03,624 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:10:46] 2025-10-13 14:10:03,625 | INFO     | ***************************************
[2025-10-13 16:10:46] 2025-10-13 14:10:03,625 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:10:46] 2025-10-13 14:10:03,625 | INFO     | ***************************************
[2025-10-13 16:10:46] 2025-10-13 14:10:03,625 | INFO     | 
[2025-10-13 16:10:46] 2025-10-13 14:10:03,625 | INFO     | architecture information:
[2025-10-13 16:10:46] 2025-10-13 14:10:03,625 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:10:46] 2025-10-13 14:10:03,630 | INFO     | cat /etc/os-release:
[2025-10-13 16:10:46] NAME="CentOS Linux"
[2025-10-13 16:10:46] VERSION="7 (Core)"
[2025-10-13 16:10:46] ID="centos"
[2025-10-13 16:10:46] ID_LIKE="rhel fedora"
[2025-10-13 16:10:46] VERSION_ID="7"
[2025-10-13 16:10:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:10:46] ANSI_COLOR="0;31"
[2025-10-13 16:10:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:10:46] HOME_URL="https://www.centos.org/"
[2025-10-13 16:10:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:10:46] 
[2025-10-13 16:10:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:10:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:10:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:10:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:10:46] 
[2025-10-13 16:10:46] 2025-10-13 14:10:03,631 | INFO     | ***************************************
[2025-10-13 16:10:46] 2025-10-13 14:10:04,133 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 16:10:46] 2025-10-13 14:10:04,139 | INFO     | sufficient remaining disk space (97645494272 B)
[2025-10-13 16:10:46] 2025-10-13 14:10:04,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:10:46] 2025-10-13 14:10:04,140 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:10:46] 2025-10-13 14:10:04,140 | INFO     | update_server=False
[2025-10-13 16:10:46] 2025-10-13 14:10:04,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:10:46] 2025-10-13 14:10:04,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:10:46] 2025-10-13 14:10:04,140 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:10:46] 2025-10-13 14:10:04,167 | INFO     | all data control threads have been joined
[2025-10-13 16:10:46] 2025-10-13 14:10:04,196 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 16:10:46] 2025-10-13 14:10:04,196 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 16:10:46] 2025-10-13 14:10:04,196 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:10:46] 2025-10-13 14:10:04,196 | INFO     | will abort loop
[2025-10-13 16:10:46] 2025-10-13 14:10:05,145 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:05,145 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:05,172 | INFO     | [data] control thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:05,201 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:05,321 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:05,490 | INFO     | all job control threads have been joined
[2025-10-13 16:10:46] 2025-10-13 14:10:05,590 | INFO     | all payload control threads have been joined
[2025-10-13 16:10:46] 2025-10-13 14:10:05,743 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:06,085 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:06,145 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:06,312 | INFO     | [job] validate thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:06,350 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:06,437 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:06,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:10:46] 2025-10-13 14:10:06,474 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:06,495 | INFO     | [job] control thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:06,595 | INFO     | [payload] control thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:06,659 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:10,467 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:10:46] 2025-10-13 14:10:35,120 | INFO     | PID=3299787 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:10:46] 2025-10-13 14:10:35,121 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:10:46] 2025-10-13 14:10:35,122 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:10:46] 2025-10-13 14:10:35,122 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:10:46] 2025-10-13 14:10:40,404 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:10:46] 2025-10-13 14:10:41,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140481420539712)>', '<ExcThread(monitor, started 140481023420160)>']
[2025-10-13 16:10:46] 2025-10-13 14:10:41,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:10:46] 2025-10-13 14:10:41,152 | INFO     | [monitor] control thread has ended
[2025-10-13 16:10:46] 2025-10-13 14:10:46,163 | INFO     | all workflow threads have been joined
[2025-10-13 16:10:46] 2025-10-13 14:10:46,163 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:10:46] 2025-10-13 14:10:46,164 | INFO     | traces error code: 0
[2025-10-13 16:10:46] 2025-10-13 14:10:46,164 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:10:46] 2025-10-13 14:10:46,222 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:10:46] 2025-10-13 14:10:46,223 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:10:46] 2025-10-13 14:10:46,224 [wrapper] pilotpid: 3299787
[2025-10-13 16:10:46] 2025-10-13 14:10:46,225 [wrapper] Pilot exit status: 0
[2025-10-13 16:10:46] 2025-10-13 14:10:46,229 [wrapper] pandaids: 6840961694
[2025-10-13 16:10:46] 2025-10-13 14:10:46,239 [wrapper] cleanup supervisor_pilot 3324171 3299788
[2025-10-13 16:10:46] 2025-10-13 14:10:46,240 [wrapper] Test setup, not cleaning
[2025-10-13 16:10:46] 2025-10-13 14:10:46,241 [wrapper] apfmon messages muted
[2025-10-13 16:10:46] 2025-10-13 14:10:46,242 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:10:46] 2025-10-13 14:10:46,243 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:10:46]  *** Error codes and diagnostics ***
[2025-10-13 16:10:46]     "exeErrorCode": 0,
[2025-10-13 16:10:46]     "exeErrorDiag": "",
[2025-10-13 16:10:46]     "pilotErrorCode": 0,
[2025-10-13 16:10:46]     "pilotErrorDiag": "",
[2025-10-13 16:10:46]  *** Listing of results directory ***
[2025-10-13 16:10:46] total 415060
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:11 queuedata.json
[2025-10-13 16:10:46] -rwx------ 1 boinc boinc     36292 Oct 13 01:13 runpilot2-wrapper.sh
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc       100 Oct 13 14:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:10:46] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 14:51 run_atlas
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc       105 Oct 13 14:51 job.xml
[2025-10-13 16:10:46] -rw-r--r-- 2 boinc boinc 221485032 Oct 13 14:51 EVNT.46676267._004648.pool.root.1
[2025-10-13 16:10:46] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:51 start_atlas.sh
[2025-10-13 16:10:46] drwxrwx--x 2 boinc boinc        68 Oct 13 14:51 shared
[2025-10-13 16:10:46] -rw-r--r-- 2 boinc boinc    569683 Oct 13 14:51 input.tar.gz
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc      6325 Oct 13 14:51 init_data.xml
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:51 boinc_lockfile
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc      2550 Oct 13 14:51 pandaJob.out
[2025-10-13 16:10:46] -rw------- 1 boinc boinc    972497 Oct 13 14:51 agis_schedconf.cvmfs.json
[2025-10-13 16:10:46] -rw------- 1 boinc boinc   1560580 Oct 13 14:51 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:10:46] drwx------ 5 boinc boinc      4096 Oct 13 14:51 pilot3
[2025-10-13 16:10:46] -rw------- 1 boinc boinc 197638836 Oct 13 16:09 HITS.46676269._091953.pool.root.1
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc       529 Oct 13 16:09 boinc_task_state.xml
[2025-10-13 16:10:46] -rw------- 1 boinc boinc      1015 Oct 13 16:09 memory_monitor_summary.json
[2025-10-13 16:10:46] -rw------- 1 boinc boinc    319027 Oct 13 16:09 log.46676269._091953.job.log.tgz.1
[2025-10-13 16:10:46] -rw------- 1 boinc boinc      7776 Oct 13 16:10 heartbeat.json
[2025-10-13 16:10:46] -rw------- 1 boinc boinc        95 Oct 13 16:10 pilot_heartbeat.json
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc      8192 Oct 13 16:10 boinc_mmap_file
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc        27 Oct 13 16:10 wrapper_checkpoint.txt
[2025-10-13 16:10:46] -rw------- 1 boinc boinc      4934 Oct 13 16:10 pilotlog.txt
[2025-10-13 16:10:46] -rw------- 1 boinc boinc    690611 Oct 13 16:10 log.46676269._091953.job.log.1
[2025-10-13 16:10:46] -rw------- 1 boinc boinc       357 Oct 13 16:10 output.list
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc       620 Oct 13 16:10 runtime_log
[2025-10-13 16:10:46] -rw------- 1 boinc boinc   1024000 Oct 13 16:10 result.tar.gz
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc      8716 Oct 13 16:10 runtime_log.err
[2025-10-13 16:10:46] -rw------- 1 boinc boinc       649 Oct 13 16:10 iKJMDmpQKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmA0lNDm2JnUFn.diag
[2025-10-13 16:10:46] -rw-r--r-- 1 boinc boinc     22031 Oct 13 16:10 stderr.txt
[2025-10-13 16:10:46] HITS file was successfully produced:
[2025-10-13 16:10:46] -rw------- 1 boinc boinc 197638836 Oct 13 16:09 shared/HITS.pool.root.1
[2025-10-13 16:10:46]  *** Contents of shared directory: ***
[2025-10-13 16:10:46] total 410880
[2025-10-13 16:10:46] -rw-r--r-- 2 boinc boinc 221485032 Oct 13 14:51 ATLAS.root_0
[2025-10-13 16:10:46] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:51 start_atlas.sh
[2025-10-13 16:10:46] -rw-r--r-- 2 boinc boinc    569683 Oct 13 14:51 input.tar.gz
[2025-10-13 16:10:46] -rw------- 1 boinc boinc 197638836 Oct 13 16:09 HITS.pool.root.1
[2025-10-13 16:10:46] -rw------- 1 boinc boinc   1024000 Oct 13 16:10 result.tar.gz
16:10:47 (3296093): run_atlas exited; CPU time 35588.549486
16:10:47 (3296093): called boinc_finish(0)

</stderr_txt>
]]>

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