Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:54:11 (3571728): wrapper (7.7.26015): starting
16:54:11 (3571728): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 16:54:11] Arguments: --nthreads 3
[2025-10-13 16:54:11] Threads: 3
[2025-10-13 16:54:11] Checking for CVMFS
[2025-10-13 16:54:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 16:54:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 16:54:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 16:54:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 16:54:11] 2.9.2.0 1825770 5813 84748 151664 2 57 30375719 36864000 0 130560 0 4531554 99.991 201329 805 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 16:54:11] CVMFS is ok
[2025-10-13 16:54:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 16:54:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 16:54:11] Further information can be found at the LHC@home message board.
[2025-10-13 16:54:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:54:11] Checking for apptainer binary...
[2025-10-13 16:54:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 16:54:11] Running /usr/bin/apptainer --version
[2025-10-13 16:54:11] apptainer version 1.4.1-1.1
[2025-10-13 16:54:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:54:11] magicA246a
[2025-10-13 16:54:11] apptainer works
[2025-10-13 16:54:11] Set ATHENA_PROC_NUMBER=3
[2025-10-13 16:54:11] Set ATHENA_CORE_NUMBER=3
[2025-10-13 16:54:11] Starting ATLAS job with PandaID=6841069703
[2025-10-13 16:54:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:19:31]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:19:31] 2025-10-13 16:18:51,373 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:19:31] 2025-10-13 16:18:51,373 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | job 6841069703 has completed (purged errors)
[2025-10-13 18:19:31] 2025-10-13 16:18:51,374 | INFO     | overall cleanup function is called
[2025-10-13 18:19:31] 2025-10-13 16:18:52,380 | INFO     | --- collectZombieJob: --- 10, [3581888]
[2025-10-13 18:19:31] 2025-10-13 16:18:52,381 | INFO     | zombie collector waiting for pid 3581888
[2025-10-13 18:19:31] 2025-10-13 16:18:52,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:19:31] 2025-10-13 16:18:52,381 | INFO     | collected zombie processes
[2025-10-13 18:19:31] 2025-10-13 16:18:52,381 | INFO     | will attempt to kill all subprocesses of pid=3581888
[2025-10-13 18:19:31] 2025-10-13 16:18:52,428 | INFO     | process IDs to be killed: [3581888] (in reverse order)
[2025-10-13 18:19:31] 2025-10-13 16:18:52,456 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:19:31] 2025-10-13 16:18:52,456 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:19:31] 2025-10-13 16:18:52,457 | INFO     | did not find any defunct processes belonging to 3581888
[2025-10-13 18:19:31] 2025-10-13 16:18:52,459 | INFO     | did not find any defunct processes belonging to 3581888
[2025-10-13 18:19:31] 2025-10-13 16:18:52,459 | INFO     | ready for new job
[2025-10-13 18:19:31] 2025-10-13 16:18:52,459 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:19:31] 2025-10-13 16:18:52,459 | INFO     | ***************************************
[2025-10-13 18:19:31] 2025-10-13 16:18:52,459 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:19:31] 2025-10-13 16:18:52,460 | INFO     | ***************************************
[2025-10-13 18:19:31] 2025-10-13 16:18:52,460 | INFO     | 
[2025-10-13 18:19:31] 2025-10-13 16:18:52,460 | INFO     | architecture information:
[2025-10-13 18:19:31] 2025-10-13 16:18:52,460 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:19:31] 2025-10-13 16:18:52,471 | INFO     | cat /etc/os-release:
[2025-10-13 18:19:31] NAME="CentOS Linux"
[2025-10-13 18:19:31] VERSION="7 (Core)"
[2025-10-13 18:19:31] ID="centos"
[2025-10-13 18:19:31] ID_LIKE="rhel fedora"
[2025-10-13 18:19:31] VERSION_ID="7"
[2025-10-13 18:19:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:19:31] ANSI_COLOR="0;31"
[2025-10-13 18:19:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:19:31] HOME_URL="https://www.centos.org/"
[2025-10-13 18:19:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:19:31] 
[2025-10-13 18:19:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:19:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:19:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:19:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:19:31] 
[2025-10-13 18:19:31] 2025-10-13 16:18:52,471 | INFO     | ***************************************
[2025-10-13 18:19:31] 2025-10-13 16:18:52,974 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 18:19:31] 2025-10-13 16:18:52,988 | INFO     | sufficient remaining disk space (274817089536 B)
[2025-10-13 18:19:31] 2025-10-13 16:18:52,989 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:19:31] 2025-10-13 16:18:52,989 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:19:31] 2025-10-13 16:18:52,989 | INFO     | update_server=False
[2025-10-13 18:19:31] 2025-10-13 16:18:52,989 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:19:31] 2025-10-13 16:18:52,989 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:19:31] 2025-10-13 16:18:52,989 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:19:31] 2025-10-13 16:18:53,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:19:31] 2025-10-13 16:18:53,051 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 18:19:31] 2025-10-13 16:18:53,051 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 18:19:31] 2025-10-13 16:18:53,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:19:31] 2025-10-13 16:18:53,051 | INFO     | will abort loop
[2025-10-13 18:19:31] 2025-10-13 16:18:53,094 | INFO     | all data control threads have been joined
[2025-10-13 18:19:31] 2025-10-13 16:18:53,995 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:53,995 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:54,057 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:54,100 | INFO     | [data] control thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:54,169 | INFO     | all payload control threads have been joined
[2025-10-13 18:19:31] 2025-10-13 16:18:54,232 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:54,505 | INFO     | all job control threads have been joined
[2025-10-13 18:19:31] 2025-10-13 16:18:54,763 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:54,924 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:55,011 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:55,052 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:55,100 | INFO     | [job] validate thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:55,105 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:55,150 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:55,175 | INFO     | [payload] control thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:55,511 | INFO     | [job] control thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:18:56,996 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:19:03,801 | INFO     | job.realtimelogging is not enabled
[2025-10-13 18:19:31] 2025-10-13 16:19:04,806 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:19:31] 2025-10-13 16:19:23,255 | INFO     | PID=3575452 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:19:31] 2025-10-13 16:19:23,256 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:19:31] 2025-10-13 16:19:23,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:19:31] 2025-10-13 16:19:23,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:19:31] 2025-10-13 16:19:24,754 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:19:31] 2025-10-13 16:19:26,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663066326848)>', '<ExcThread(monitor, started 139662572107520)>']
[2025-10-13 18:19:31] 2025-10-13 16:19:26,270 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:19:31] 2025-10-13 16:19:26,270 | INFO     | [monitor] control thread has ended
[2025-10-13 18:19:31] 2025-10-13 16:19:31,168 | INFO     | all workflow threads have been joined
[2025-10-13 18:19:31] 2025-10-13 16:19:31,168 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:19:31] 2025-10-13 16:19:31,169 | INFO     | traces error code: 0
[2025-10-13 18:19:31] 2025-10-13 16:19:31,169 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:19:31] 2025-10-13 16:19:31,224 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:19:31] 2025-10-13 16:19:31,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:19:31] 2025-10-13 16:19:31,229 [wrapper] pilotpid: 3575452
[2025-10-13 18:19:31] 2025-10-13 16:19:31,231 [wrapper] Pilot exit status: 0
[2025-10-13 18:19:31] 2025-10-13 16:19:31,239 [wrapper] pandaids: 6841069703
[2025-10-13 18:19:31] 2025-10-13 16:19:31,257 [wrapper] cleanup supervisor_pilot 3594527 3575453
[2025-10-13 18:19:31] 2025-10-13 16:19:31,260 [wrapper] Test setup, not cleaning
[2025-10-13 18:19:31] 2025-10-13 16:19:31,262 [wrapper] apfmon messages muted
[2025-10-13 18:19:31] 2025-10-13 16:19:31,265 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:19:31] 2025-10-13 16:19:31,267 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:19:31]  *** Error codes and diagnostics ***
[2025-10-13 18:19:31]     "exeErrorCode": 0,
[2025-10-13 18:19:31]     "exeErrorDiag": "",
[2025-10-13 18:19:31]     "pilotErrorCode": 0,
[2025-10-13 18:19:31]     "pilotErrorDiag": "",
[2025-10-13 18:19:31]  *** Listing of results directory ***
[2025-10-13 18:19:31] total 417464
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:48 pilot3.tar.gz
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc      5112 Oct 13 03:03 queuedata.json
[2025-10-13 18:19:31] -rwx------ 1 boinc boinc     36292 Oct 13 03:04 runpilot2-wrapper.sh
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc       100 Oct 13 16:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:19:31] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 16:54 run_atlas
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc       105 Oct 13 16:54 job.xml
[2025-10-13 18:19:31] -rw-r--r-- 2 boinc boinc 223171233 Oct 13 16:54 EVNT.46676267._004716.pool.root.1
[2025-10-13 18:19:31] -rw-r--r-- 2 boinc boinc    569683 Oct 13 16:54 input.tar.gz
[2025-10-13 18:19:31] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:54 start_atlas.sh
[2025-10-13 18:19:31] drwxrwx--x 2 boinc boinc      4096 Oct 13 16:54 shared
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc         0 Oct 13 16:54 boinc_setup_complete
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc      6449 Oct 13 16:54 init_data.xml
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc         0 Oct 13 16:54 boinc_lockfile
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc      2550 Oct 13 16:54 pandaJob.out
[2025-10-13 18:19:31] -rw------- 1 boinc boinc    972791 Oct 13 16:54 agis_schedconf.cvmfs.json
[2025-10-13 18:19:31] -rw------- 1 boinc boinc   1560580 Oct 13 16:54 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:19:31] drwx------ 5 boinc boinc      4096 Oct 13 16:54 pilot3
[2025-10-13 18:19:31] -rw------- 1 boinc boinc 198411170 Oct 13 18:18 HITS.46676269._093743.pool.root.1
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc       529 Oct 13 18:18 boinc_task_state.xml
[2025-10-13 18:19:31] -rw------- 1 boinc boinc      1026 Oct 13 18:18 memory_monitor_summary.json
[2025-10-13 18:19:31] -rw------- 1 boinc boinc    261505 Oct 13 18:18 log.46676269._093743.job.log.tgz.1
[2025-10-13 18:19:31] -rw------- 1 boinc boinc        95 Oct 13 18:18 pilot_heartbeat.json
[2025-10-13 18:19:31] -rw------- 1 boinc boinc      7758 Oct 13 18:18 heartbeat.json
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc      8192 Oct 13 18:19 boinc_mmap_file
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc        27 Oct 13 18:19 wrapper_checkpoint.txt
[2025-10-13 18:19:31] -rw------- 1 boinc boinc      5010 Oct 13 18:19 pilotlog.txt
[2025-10-13 18:19:31] -rw------- 1 boinc boinc    744254 Oct 13 18:19 log.46676269._093743.job.log.1
[2025-10-13 18:19:31] -rw------- 1 boinc boinc       357 Oct 13 18:19 output.list
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc       620 Oct 13 18:19 runtime_log
[2025-10-13 18:19:31] -rw------- 1 boinc boinc   1024000 Oct 13 18:19 result.tar.gz
[2025-10-13 18:19:31] -rw------- 1 boinc boinc       662 Oct 13 18:19 x3LNDmVAMS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfJmNDmfOpkwn.diag
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc      8797 Oct 13 18:19 runtime_log.err
[2025-10-13 18:19:31] -rw-r--r-- 1 boinc boinc     12261 Oct 13 18:19 stderr.txt
[2025-10-13 18:19:31] HITS file was successfully produced:
[2025-10-13 18:19:31] -rw------- 1 boinc boinc 198411170 Oct 13 18:18 shared/HITS.pool.root.1
[2025-10-13 18:19:31]  *** Contents of shared directory: ***
[2025-10-13 18:19:31] total 413292
[2025-10-13 18:19:31] -rw-r--r-- 2 boinc boinc 223171233 Oct 13 16:54 ATLAS.root_0
[2025-10-13 18:19:31] -rw-r--r-- 2 boinc boinc    569683 Oct 13 16:54 input.tar.gz
[2025-10-13 18:19:31] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:54 start_atlas.sh
[2025-10-13 18:19:31] -rw------- 1 boinc boinc 198411170 Oct 13 18:18 HITS.pool.root.1
[2025-10-13 18:19:31] -rw------- 1 boinc boinc   1024000 Oct 13 18:19 result.tar.gz
18:19:32 (3571728): run_atlas exited; CPU time 14504.930299
18:19:32 (3571728): called boinc_finish(0)

</stderr_txt>
]]>

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