Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:56:21 (78820): wrapper (7.7.26015): starting
17:56:21 (78820): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 17:56:21] Arguments: --nthreads 4
[2025-10-13 17:56:21] Threads: 4
[2025-10-13 17:56:21] Checking for CVMFS
[2025-10-13 17:56:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:56:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:56:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:56:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:56:22] 2.9.2.0 3212 213 59560 151666 2 57 33910798 36864000 0 130560 0 196363 99.992 8029 835 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 17:56:22] CVMFS is ok
[2025-10-13 17:56:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:56:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:56:22] Further information can be found at the LHC@home message board.
[2025-10-13 17:56:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:56:22] Checking for apptainer binary...
[2025-10-13 17:56:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:56:22] Running /usr/bin/apptainer --version
[2025-10-13 17:56:22] apptainer version 1.4.1-1.1
[2025-10-13 17:56:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:56:22] magicA250
[2025-10-13 17:56:22] apptainer works
[2025-10-13 17:56:22] Set ATHENA_PROC_NUMBER=4
[2025-10-13 17:56:22] Set ATHENA_CORE_NUMBER=4
[2025-10-13 17:56:22] Starting ATLAS job with PandaID=6841069040
[2025-10-13 17:56:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 19:08:41]  *** The last 200 lines of the pilot log: ***
[2025-10-13 19:08:41] 2025-10-13 17:07:51,896 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 19:08:41] 2025-10-13 17:07:51,951 | INFO     | all job control threads have been joined
[2025-10-13 19:08:41] 2025-10-13 17:07:52,787 | INFO     | [job] retrieve thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:52,787 | INFO     | [job] job monitor thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:52,787 | INFO     | [job] queue monitor thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:52,791 | INFO     | [payload] control thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:52,809 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:52,891 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:52,901 | INFO     | [data] control thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:52,915 | INFO     | [payload] failed_post thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:52,953 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 19:08:41] 2025-10-13 17:07:52,957 | INFO     | [job] control thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:53,435 | INFO     | [data] copytool_in thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:53,552 | INFO     | [payload] validate_post thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:53,965 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:54,127 | INFO     | [job] validate thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:54,959 | INFO     | [data] copytool_out thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:07:55,903 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:08:01,854 | INFO     | job.realtimelogging is not enabled
[2025-10-13 19:08:41] 2025-10-13 17:08:02,860 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 19:08:41] 2025-10-13 17:08:22,405 | INFO     | PID=82616 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 19:08:41] 2025-10-13 17:08:22,405 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 19:08:41] 2025-10-13 17:08:22,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 19:08:41] 2025-10-13 17:08:22,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 19:08:41] 2025-10-13 17:08:34,616 | INFO     | [monitor] cgroup control has ended
[2025-10-13 19:08:41] 2025-10-13 17:08:36,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140253580027712)>', '<ExcThread(monitor, started 140252425484032)>']
[2025-10-13 19:08:41] 2025-10-13 17:08:37,482 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 19:08:41] 2025-10-13 17:08:37,482 | INFO     | [monitor] control thread has ended
[2025-10-13 19:08:41] 2025-10-13 17:08:41,540 | INFO     | all workflow threads have been joined
[2025-10-13 19:08:41] 2025-10-13 17:08:41,540 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 19:08:41] 2025-10-13 17:08:41,540 | INFO     | traces error code: 0
[2025-10-13 19:08:41] 2025-10-13 17:08:41,540 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 19:08:41] 2025-10-13 17:08:41,619 [wrapper] ==== pilot stdout END ====
[2025-10-13 19:08:41] 2025-10-13 17:08:41,623 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 19:08:41] 2025-10-13 17:08:41,627 [wrapper] pilotpid: 82616
[2025-10-13 19:08:41] 2025-10-13 17:08:41,631 [wrapper] Pilot exit status: 0
[2025-10-13 19:08:41] 2025-10-13 17:08:41,643 [wrapper] pandaids: 6841069040
[2025-10-13 19:08:41] 2025-10-13 17:08:41,667 [wrapper] cleanup supervisor_pilot   99391 82617
[2025-10-13 19:08:41] 2025-10-13 17:08:41,671 [wrapper] Test setup, not cleaning
[2025-10-13 19:08:41] 2025-10-13 17:08:41,674 [wrapper] apfmon messages muted
[2025-10-13 19:08:41] 2025-10-13 17:08:41,678 [wrapper] ==== wrapper stdout END ====
[2025-10-13 19:08:41] 2025-10-13 17:08:41,682 [wrapper] ==== wrapper stderr END ====
[2025-10-13 19:08:41]  *** Error codes and diagnostics ***
[2025-10-13 19:08:41]     "exeErrorCode": 0,
[2025-10-13 19:08:41]     "exeErrorDiag": "",
[2025-10-13 19:08:41]     "pilotErrorCode": 0,
[2025-10-13 19:08:41]     "pilotErrorDiag": "",
[2025-10-13 19:08:41]  *** Listing of results directory ***
[2025-10-13 19:08:41] total 410600
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:11 pilot3.tar.gz
[2025-10-13 19:08:41] -rwx------ 1 boinc boinc     36292 Oct 13 02:33 runpilot2-wrapper.sh
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:33 queuedata.json
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 19:08:41] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:56 run_atlas
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:56 job.xml
[2025-10-13 19:08:41] -rw-r--r-- 2 boinc boinc 221161282 Oct 13 17:56 EVNT.46676267._004696.pool.root.1
[2025-10-13 19:08:41] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:56 shared
[2025-10-13 19:08:41] -rw-r--r-- 2 boinc boinc    569681 Oct 13 17:56 input.tar.gz
[2025-10-13 19:08:41] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:56 start_atlas.sh
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:56 boinc_setup_complete
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc      6376 Oct 13 17:56 init_data.xml
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:56 boinc_lockfile
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc      2550 Oct 13 17:56 pandaJob.out
[2025-10-13 19:08:41] -rw------- 1 boinc boinc    972783 Oct 13 17:56 agis_schedconf.cvmfs.json
[2025-10-13 19:08:41] -rw------- 1 boinc boinc   1560580 Oct 13 17:56 agis_ddmendpoints.agis.ALL.json
[2025-10-13 19:08:41] drwx------ 5 boinc boinc      4096 Oct 13 17:56 pilot3
[2025-10-13 19:08:41] -rw------- 1 boinc boinc 193581253 Oct 13 19:07 HITS.46676269._093249.pool.root.1
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc       529 Oct 13 19:07 boinc_task_state.xml
[2025-10-13 19:08:41] -rw------- 1 boinc boinc      1024 Oct 13 19:07 memory_monitor_summary.json
[2025-10-13 19:08:41] -rw------- 1 boinc boinc    274620 Oct 13 19:07 log.46676269._093249.job.log.tgz.1
[2025-10-13 19:08:41] -rw------- 1 boinc boinc      7777 Oct 13 19:07 heartbeat.json
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc      8192 Oct 13 19:08 boinc_mmap_file
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc        27 Oct 13 19:08 wrapper_checkpoint.txt
[2025-10-13 19:08:41] -rw------- 1 boinc boinc        95 Oct 13 19:08 pilot_heartbeat.json
[2025-10-13 19:08:41] -rw------- 1 boinc boinc      4822 Oct 13 19:08 pilotlog.txt
[2025-10-13 19:08:41] -rw------- 1 boinc boinc    634608 Oct 13 19:08 log.46676269._093249.job.log.1
[2025-10-13 19:08:41] -rw------- 1 boinc boinc       357 Oct 13 19:08 output.list
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc       620 Oct 13 19:08 runtime_log
[2025-10-13 19:08:41] -rw------- 1 boinc boinc    931840 Oct 13 19:08 result.tar.gz
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc      8792 Oct 13 19:08 runtime_log.err
[2025-10-13 19:08:41] -rw------- 1 boinc boinc       661 Oct 13 19:08 kV0KDm0fLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyCmNDm7CmQmn.diag
[2025-10-13 19:08:41] -rw-r--r-- 1 boinc boinc      6742 Oct 13 19:08 stderr.txt
[2025-10-13 19:08:41] HITS file was successfully produced:
[2025-10-13 19:08:41] -rw------- 1 boinc boinc 193581253 Oct 13 19:07 shared/HITS.pool.root.1
[2025-10-13 19:08:41]  *** Contents of shared directory: ***
[2025-10-13 19:08:41] total 406524
[2025-10-13 19:08:41] -rw-r--r-- 2 boinc boinc 221161282 Oct 13 17:56 ATLAS.root_0
[2025-10-13 19:08:41] -rw-r--r-- 2 boinc boinc    569681 Oct 13 17:56 input.tar.gz
[2025-10-13 19:08:41] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:56 start_atlas.sh
[2025-10-13 19:08:41] -rw------- 1 boinc boinc 193581253 Oct 13 19:07 HITS.pool.root.1
[2025-10-13 19:08:41] -rw------- 1 boinc boinc    931840 Oct 13 19:08 result.tar.gz
19:08:43 (78820): run_atlas exited; CPU time 16158.007845
19:08:43 (78820): called boinc_finish(0)

</stderr_txt>
]]>

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