Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:48:08 (496267): wrapper (7.7.26015): starting
11:48:08 (496267): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 11:48:08] Arguments: --nthreads 12
[2025-10-13 11:48:08] Threads: 12
[2025-10-13 11:48:08] Checking for CVMFS
[2025-10-13 11:48:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:48:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:48:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:48:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:48:09] 2.13.2.0 8715 30328 236064 151656 3 188 40575384 46080001 6445 130560 0 206699033 99.894 56076804 21598 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 11:48:09] CVMFS is ok
[2025-10-13 11:48:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:48:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:48:09] Further information can be found at the LHC@home message board.
[2025-10-13 11:48:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:48:09] Checking for apptainer binary...
[2025-10-13 11:48:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:48:09] Running /usr/bin/apptainer --version
[2025-10-13 11:48:09] apptainer version 1.4.2-1.el9
[2025-10-13 11:48:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:48:09] mff2104.farm.particle.cz
[2025-10-13 11:48:09] apptainer works
[2025-10-13 11:48:09] Set ATHENA_PROC_NUMBER=12
[2025-10-13 11:48:09] Set ATHENA_CORE_NUMBER=12
[2025-10-13 11:48:09] Starting ATLAS job with PandaID=6840854403
[2025-10-13 11:48:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:45:38]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:45:38]  lfn=log.46676269._091639.job.log.tgz.1
[2025-10-13 12:45:38]  mtime=0
[2025-10-13 12:45:38]  protocol_id=None
[2025-10-13 12:45:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 12:45:38]  replicas=None
[2025-10-13 12:45:38]  scope=mc23_13p6TeV
[2025-10-13 12:45:38]  status=None
[2025-10-13 12:45:38]  status_code=0
[2025-10-13 12:45:38]  storage_token=
[2025-10-13 12:45:38]  surl=/scratch/.boinc/slots/7/PanDA_Pilot-6840854403/log.46676269._091639.job.log.tgz.1
[2025-10-13 12:45:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5d/ff/log.46676269._091639.job.log.tgz.1
[2025-10-13 12:45:38]  workdir=None
[2025-10-13 12:45:38] ]
[2025-10-13 12:45:38] 2025-10-13 10:45:01,111 | INFO     | transferring file log.46676269._091639.job.log.tgz.1 from /scratch/.boinc/slots/7/PanDA_Pilot-6840854403/log.46676269._091639.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-13 12:45:38] 2025-10-13 10:45:01,111 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/7/PanDA_Pilot-6840854403/log.46676269._091639.job.log.tgz.1 /scratch/.boinc/slots/7/log.46676269._091639.j
[2025-10-13 12:45:38] 2025-10-13 10:45:01,202 | INFO     | adding to output.list: log.46676269._091639.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5d/ff/log.46676269._091639.job.log.tg
[2025-10-13 12:45:38] 2025-10-13 10:45:01,203 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 12:45:38] 2025-10-13 10:45:01,203 | INFO     | summary of transferred files:
[2025-10-13 12:45:38] 2025-10-13 10:45:01,203 | INFO     |  -- lfn=log.46676269._091639.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 12:45:38] 2025-10-13 10:45:01,203 | INFO     | stage-out finished correctly
[2025-10-13 12:45:38] 2025-10-13 10:45:01,296 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 12:45:38] 2025-10-13 10:45:01,633 | INFO     | job 6840854403 has state=finished
[2025-10-13 12:45:38] 2025-10-13 10:45:01,634 | INFO     | preparing for final server update for job 6840854403 in state='finished'
[2025-10-13 12:45:38] 2025-10-13 10:45:01,634 | INFO     | this job has now completed (state=finished)
[2025-10-13 12:45:38] 2025-10-13 10:45:01,634 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 12:45:38] 2025-10-13 10:45:01,635 | INFO     | log transfer has been attempted: DONE
[2025-10-13 12:45:38] 2025-10-13 10:45:01,635 | INFO     | job 6840854403 has finished - writing final server update
[2025-10-13 12:45:38] 2025-10-13 10:45:01,635 | INFO     | total number of processed events: 400 (read)
[2025-10-13 12:45:38] 2025-10-13 10:45:01,636 | INFO     | executing command: lscpu
[2025-10-13 12:45:38] 2025-10-13 10:45:01,690 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 12:45:38] 2025-10-13 10:45:02,638 | INFO     | monitor loop #247: job 0:6840854403 is in state 'finished'
[2025-10-13 12:45:38] 2025-10-13 10:45:02,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 12:45:38] 2025-10-13 10:45:02,909 | INFO     | time since job start (3401s) is within the limit (172800.0s)
[2025-10-13 12:45:38] 2025-10-13 10:45:04,915 | INFO     | time since job start (3403s) is within the limit (172800.0s)
[2025-10-13 12:45:38] 2025-10-13 10:45:05,141 | INFO     | monitor loop #248: job 0:6840854403 is in state 'finished'
[2025-10-13 12:45:38] 2025-10-13 10:45:05,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 12:45:38] 2025-10-13 10:45:06,407 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 12:45:38] 2025-10-13 10:45:06,422 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2721.6994479166665
[2025-10-13 12:45:38] 2025-10-13 10:45:06,439 | INFO     | using path: /scratch/.boinc/slots/7/PanDA_Pilot-6840854403/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 12:45:38] 2025-10-13 10:45:06,440 | INFO     | extracted standard info from prmon json
[2025-10-13 12:45:38] 2025-10-13 10:45:06,440 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 12:45:38] 2025-10-13 10:45:06,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 12:45:38] 2025-10-13 10:45:06,441 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 12:45:38] 2025-10-13 10:45:06,441 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 12:45:38] 2025-10-13 10:45:06,442 | INFO     | fitting pss+swap vs Time
[2025-10-13 12:45:38] 2025-10-13 10:45:06,443 | INFO     | sum of square deviations: 36465800.0
[2025-10-13 12:45:38] 2025-10-13 10:45:06,443 | INFO     | sum of deviations: -305085155.99999994
[2025-10-13 12:45:38] 2025-10-13 10:45:06,443 | INFO     | mean x: 1760350699.0
[2025-10-13 12:45:38] 2025-10-13 10:45:06,443 | INFO     | mean y: 2704426.0408163266
[2025-10-13 12:45:38] 2025-10-13 10:45:06,443 | INFO     | -- intersect: 14730390850.557049
[2025-10-13 12:45:38] 2025-10-13 10:45:06,443 | INFO     | intersect: 14730390850.557049
[2025-10-13 12:45:38] 2025-10-13 10:45:06,443 | INFO     | chi2: 0.0024229905502708496
[2025-10-13 12:45:38] 2025-10-13 10:45:06,443 | INFO     | -- intersect: 14730390850.557049
[2025-10-13 12:45:38] 2025-10-13 10:45:06,444 | INFO     | current memory leak: -8.37 B/s (using 49 data points, chi2=0.00)
[2025-10-13 12:45:38] 2025-10-13 10:45:06,444 | INFO     | could have reported an average CPU frequency of 2749 MHz (5 samples)
[2025-10-13 12:45:38] 2025-10-13 10:45:06,444 | INFO     | ..............................
[2025-10-13 12:45:38] 2025-10-13 10:45:06,444 | INFO     | . Timing measurements:
[2025-10-13 12:45:38] 2025-10-13 10:45:06,444 | INFO     | . get job = 0 s
[2025-10-13 12:45:38] 2025-10-13 10:45:06,444 | INFO     | . initial setup = 1 s
[2025-10-13 12:45:38] 2025-10-13 10:45:06,444 | INFO     | . payload setup = 6 s
[2025-10-13 12:45:38] 2025-10-13 10:45:06,445 | INFO     | . stage-in = 0 s
[2025-10-13 12:45:38] 2025-10-13 10:45:06,445 | INFO     | . payload execution = 3371 s
[2025-10-13 12:45:38] 2025-10-13 10:45:06,445 | INFO     | . stage-out = 0 s
[2025-10-13 12:45:38] 2025-10-13 10:45:06,445 | INFO     | . log creation = 0 s
[2025-10-13 12:45:38] 2025-10-13 10:45:06,445 | INFO     | ..............................
[2025-10-13 12:45:38] 2025-10-13 10:45:06,537 | INFO     | 
[2025-10-13 12:45:38] 2025-10-13 10:45:06,537 | INFO     | job summary report
[2025-10-13 12:45:38] 2025-10-13 10:45:06,538 | INFO     | --------------------------------------------------
[2025-10-13 12:45:38] 2025-10-13 10:45:06,538 | INFO     | PanDA job id: 6840854403
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | task id: 46676269
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | errors: (none)
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | pilot state: finished 
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | transexitcode: 0
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | exeerrorcode: 0
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | exeerrordiag: 
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | exitcode: 0
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | exitmsg: OK
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | cpuconsumptiontime: 35768 s
[2025-10-13 12:45:38] 2025-10-13 10:45:06,539 | INFO     | nevents: 400
[2025-10-13 12:45:38] 2025-10-13 10:45:06,540 | INFO     | neventsw: 0
[2025-10-13 12:45:38] 2025-10-13 10:45:06,540 | INFO     | pid: 509094
[2025-10-13 12:45:38] 2025-10-13 10:45:06,540 | INFO     | pgrp: 509094
[2025-10-13 12:45:38] 2025-10-13 10:45:06,540 | INFO     | corecount: 12
[2025-10-13 12:45:38] 2025-10-13 10:45:06,540 | INFO     | event service: False
[2025-10-13 12:45:38] 2025-10-13 10:45:06,540 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 12: 2349175, 3381: 2374719, 3383: 2383903, 3388: 2384073}
[2025-10-13 12:45:38] 2025-10-13 10:45:06,540 | INFO     | --------------------------------------------------
[2025-10-13 12:45:38] 2025-10-13 10:45:06,540 | INFO     | 
[2025-10-13 12:45:38] 2025-10-13 10:45:06,540 | INFO     | executing command: ls -lF /scratch/.boinc/slots/7
[2025-10-13 12:45:38] 2025-10-13 10:45:06,569 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,569 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,569 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,570 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,570 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,570 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,570 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,570 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,570 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,570 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,570 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,570 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,570 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,571 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,571 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,571 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,571 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,571 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:45:38] 2025-10-13 10:45:06,571 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,571 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:45:38] 2025-10-13 10:45:06,571 | INFO     | job 6840854403 has completed (purged errors)
[2025-10-13 12:45:38] 2025-10-13 10:45:06,571 | INFO     | overall cleanup function is called
[2025-10-13 12:45:38] 2025-10-13 10:45:07,581 | INFO     | --- collectZombieJob: --- 10, [509094]
[2025-10-13 12:45:38] 2025-10-13 10:45:07,582 | INFO     | zombie collector waiting for pid 509094
[2025-10-13 12:45:38] 2025-10-13 10:45:07,582 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:45:38] 2025-10-13 10:45:07,582 | INFO     | collected zombie processes
[2025-10-13 12:45:38] 2025-10-13 10:45:07,582 | INFO     | will attempt to kill all subprocesses of pid=509094
[2025-10-13 12:45:38] 2025-10-13 10:45:07,923 | INFO     | process IDs to be killed: [509094] (in reverse order)
[2025-10-13 12:45:38] 2025-10-13 10:45:08,040 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:45:38] 2025-10-13 10:45:08,040 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:45:38] 2025-10-13 10:45:08,052 | INFO     | did not find any defunct processes belonging to 509094
[2025-10-13 12:45:38] 2025-10-13 10:45:08,061 | INFO     | did not find any defunct processes belonging to 509094
[2025-10-13 12:45:38] 2025-10-13 10:45:08,061 | INFO     | ready for new job
[2025-10-13 12:45:38] 2025-10-13 10:45:08,061 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:45:38] 2025-10-13 10:45:08,063 | INFO     | ***************************************
[2025-10-13 12:45:38] 2025-10-13 10:45:08,063 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:45:38] 2025-10-13 10:45:08,063 | INFO     | ***************************************
[2025-10-13 12:45:38] 2025-10-13 10:45:08,063 | INFO     | 
[2025-10-13 12:45:38] 2025-10-13 10:45:08,069 | INFO     | architecture information:
[2025-10-13 12:45:38] 2025-10-13 10:45:08,070 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:45:38] 2025-10-13 10:45:08,092 | INFO     | cat /etc/os-release:
[2025-10-13 12:45:38] NAME="CentOS Linux"
[2025-10-13 12:45:38] VERSION="7 (Core)"
[2025-10-13 12:45:38] ID="centos"
[2025-10-13 12:45:38] ID_LIKE="rhel fedora"
[2025-10-13 12:45:38] VERSION_ID="7"
[2025-10-13 12:45:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:45:38] ANSI_COLOR="0;31"
[2025-10-13 12:45:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:45:38] HOME_URL="https://www.centos.org/"
[2025-10-13 12:45:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:45:38] 
[2025-10-13 12:45:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:45:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:45:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:45:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:45:38] 
[2025-10-13 12:45:38] 2025-10-13 10:45:08,093 | INFO     | ***************************************
[2025-10-13 12:45:38] 2025-10-13 10:45:08,596 | INFO     | executing command: df -mP /scratch/.boinc/slots/7
[2025-10-13 12:45:38] 2025-10-13 10:45:08,620 | INFO     | sufficient remaining disk space (1681913806848 B)
[2025-10-13 12:45:38] 2025-10-13 10:45:08,620 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:45:38] 2025-10-13 10:45:08,620 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:45:38] 2025-10-13 10:45:08,620 | INFO     | update_server=False
[2025-10-13 12:45:38] 2025-10-13 10:45:08,620 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:45:38] 2025-10-13 10:45:08,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:45:38] 2025-10-13 10:45:08,651 | INFO     | aborting loop
[2025-10-13 12:45:38] 2025-10-13 10:45:08,880 | INFO     | all data control threads have been joined
[2025-10-13 12:45:38] 2025-10-13 10:45:09,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:45:38] 2025-10-13 10:45:09,586 | INFO     | all payload control threads have been joined
[2025-10-13 12:45:38] 2025-10-13 10:45:09,626 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:09,655 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:09,886 | INFO     | [data] control thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:10,105 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:10,183 | INFO     | all job control threads have been joined
[2025-10-13 12:45:38] 2025-10-13 10:45:10,592 | INFO     | [payload] control thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:10,709 | INFO     | [job] validate thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:10,733 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:10,816 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:10,897 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:10,914 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:10,989 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:11,062 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:11,189 | INFO     | [job] control thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:11,313 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:11,548 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:45:38] 2025-10-13 10:45:11,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:45:38] 2025-10-13 10:45:12,554 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:15,905 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:45:38] 2025-10-13 10:45:26,225 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:45:38] 2025-10-13 10:45:26,228 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140457565992768)>', '<ExcThread(monitor, started 140457057163008)>']
[2025-10-13 12:45:38] 2025-10-13 10:45:31,253 | INFO     | all workflow threads have been joined
[2025-10-13 12:45:38] 2025-10-13 10:45:31,254 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:45:38] 2025-10-13 10:45:31,254 | INFO     | traces error code: 0
[2025-10-13 12:45:38] 2025-10-13 10:45:31,254 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:45:38] 2025-10-13 10:45:38,413 | INFO     | PID=500464 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 12:45:38] 2025-10-13 10:45:38,413 | INFO     | .. there are 8 such processes running
[2025-10-13 12:45:38] 2025-10-13 10:45:38,414 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:45:38] 2025-10-13 10:45:38,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:45:38] 2025-10-13 10:45:38,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:45:38] 2025-10-13 10:45:38,414 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:45:38] 2025-10-13 10:45:38,414 | INFO     | [monitor] control thread has ended
[2025-10-13 12:45:38] 2025-10-13 10:45:38,565 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:45:38] 2025-10-13 10:45:38,569 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:45:38] 2025-10-13 10:45:38,572 [wrapper] pilotpid: 500464
[2025-10-13 12:45:38] 2025-10-13 10:45:38,575 [wrapper] Pilot exit status: 0
[2025-10-13 12:45:38] 2025-10-13 10:45:38,588 [wrapper] pandaids: 6840854403
[2025-10-13 12:45:38] 2025-10-13 10:45:38,662 [wrapper] cleanup supervisor_pilot  661461 500465
[2025-10-13 12:45:38] 2025-10-13 10:45:38,666 [wrapper] Test setup, not cleaning
[2025-10-13 12:45:38] 2025-10-13 10:45:38,669 [wrapper] apfmon messages muted
[2025-10-13 12:45:38] 2025-10-13 10:45:38,672 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:45:38] 2025-10-13 10:45:38,675 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:45:38]  *** Error codes and diagnostics ***
[2025-10-13 12:45:38]     "exeErrorCode": 0,
[2025-10-13 12:45:38]     "exeErrorDiag": "",
[2025-10-13 12:45:38]     "pilotErrorCode": 0,
[2025-10-13 12:45:38]     "pilotErrorDiag": "",
[2025-10-13 12:45:38]  *** Listing of results directory ***
[2025-10-13 12:45:38] total 415440
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc    557409 Oct 13 00:49 pilot3.tar.gz
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc      5112 Oct 13 00:53 queuedata.json
[2025-10-13 12:45:38] -rwx------ 1 boinc boinc     36292 Oct 13 00:54 runpilot2-wrapper.sh
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc       100 Oct 13 11:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:45:38] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 11:48 run_atlas
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc       105 Oct 13 11:48 job.xml
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc      6665 Oct 13 11:48 init_data.xml
[2025-10-13 12:45:38] -rw-r--r-- 2 boinc boinc 224118860 Oct 13 11:48 EVNT.46676267._004637.pool.root.1
[2025-10-13 12:45:38] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:48 start_atlas.sh
[2025-10-13 12:45:38] drwxrwx--x 2 boinc boinc      4096 Oct 13 11:48 shared
[2025-10-13 12:45:38] -rw-r--r-- 2 boinc boinc    569683 Oct 13 11:48 input.tar.gz
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:48 boinc_lockfile
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc      2549 Oct 13 11:48 pandaJob.out
[2025-10-13 12:45:38] -rw------- 1 boinc boinc    972849 Oct 13 11:48 agis_schedconf.cvmfs.json
[2025-10-13 12:45:38] -rw------- 1 boinc boinc   1560580 Oct 13 11:48 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:45:38] drwx------ 5 boinc boinc      4096 Oct 13 11:48 pilot3
[2025-10-13 12:45:38] -rw------- 1 boinc boinc 195652354 Oct 13 12:44 HITS.46676269._091639.pool.root.1
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc       529 Oct 13 12:44 boinc_task_state.xml
[2025-10-13 12:45:38] -rw------- 1 boinc boinc      1022 Oct 13 12:44 memory_monitor_summary.json
[2025-10-13 12:45:38] -rw------- 1 boinc boinc    358417 Oct 13 12:45 log.46676269._091639.job.log.tgz.1
[2025-10-13 12:45:38] -rw------- 1 boinc boinc      7778 Oct 13 12:45 heartbeat.json
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:45 boinc_mmap_file
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:45 wrapper_checkpoint.txt
[2025-10-13 12:45:38] -rw------- 1 boinc boinc        95 Oct 13 12:45 pilot_heartbeat.json
[2025-10-13 12:45:38] -rw------- 1 boinc boinc       821 Oct 13 12:45 pilotlog.txt
[2025-10-13 12:45:38] -rw------- 1 boinc boinc    508983 Oct 13 12:45 log.46676269._091639.job.log.1
[2025-10-13 12:45:38] -rw------- 1 boinc boinc       357 Oct 13 12:45 output.list
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:45 runtime_log
[2025-10-13 12:45:38] -rw------- 1 boinc boinc    890880 Oct 13 12:45 result.tar.gz
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc      8764 Oct 13 12:45 runtime_log.err
[2025-10-13 12:45:38] -rw------- 1 boinc boinc       663 Oct 13 12:45 2hhKDmY8JS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0wlNDmq00qyn.diag
[2025-10-13 12:45:38] -rw-r--r-- 1 boinc boinc     21651 Oct 13 12:45 stderr.txt
[2025-10-13 12:45:38] HITS file was successfully produced:
[2025-10-13 12:45:38] -rw------- 1 boinc boinc 195652354 Oct 13 12:44 shared/HITS.pool.root.1
[2025-10-13 12:45:38]  *** Contents of shared directory: ***
[2025-10-13 12:45:38] total 411392
[2025-10-13 12:45:38] -rw-r--r-- 2 boinc boinc 224118860 Oct 13 11:48 ATLAS.root_0
[2025-10-13 12:45:38] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:48 start_atlas.sh
[2025-10-13 12:45:38] -rw-r--r-- 2 boinc boinc    569683 Oct 13 11:48 input.tar.gz
[2025-10-13 12:45:38] -rw------- 1 boinc boinc 195652354 Oct 13 12:44 HITS.pool.root.1
[2025-10-13 12:45:38] -rw------- 1 boinc boinc    890880 Oct 13 12:45 result.tar.gz
12:45:40 (496267): run_atlas exited; CPU time 35824.497078
12:45:40 (496267): called boinc_finish(0)

</stderr_txt>
]]>

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