Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:59:07 (16147): wrapper (7.7.26015): starting
01:59:07 (16147): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 01:59:07] Arguments: --nthreads 12
[2025-10-13 01:59:07] Threads: 12
[2025-10-13 01:59:07] Checking for CVMFS
[2025-10-13 01:59:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:59:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:59:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:59:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:59:07] 2.11.2.0 2984 223886 97216 151650 3 57 15421776 20275201 1 130560 1 110886124 99.984 13403603 12646 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 01:59:07] CVMFS is ok
[2025-10-13 01:59:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:59:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:59:07] Further information can be found at the LHC@home message board.
[2025-10-13 01:59:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:59:07] Checking for apptainer binary...
[2025-10-13 01:59:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:59:07] Running /usr/bin/apptainer --version
[2025-10-13 01:59:07] apptainer version 1.3.2-1.el7
[2025-10-13 01:59:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:59:09] c-205-26.aglt2.org
[2025-10-13 01:59:09] apptainer works
[2025-10-13 01:59:09] Set ATHENA_PROC_NUMBER=12
[2025-10-13 01:59:09] Set ATHENA_CORE_NUMBER=12
[2025-10-13 01:59:09] Starting ATLAS job with PandaID=6841070075
[2025-10-13 01:59:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:12:37]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:12:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841070075/log.46676269._093880.job.log.tgz.1
[2025-10-13 03:12:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/41/7f/log.46676269._093880.job.log.tgz.1
[2025-10-13 03:12:37]  workdir=None
[2025-10-13 03:12:37] ]
[2025-10-13 03:12:37] 2025-10-13 07:11:38,447 | INFO     | transferring file log.46676269._093880.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841070075/log.46676269._093880.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 03:12:37] 2025-10-13 07:11:38,448 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841070075/log.46676269._093880.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._093880.job
[2025-10-13 03:12:37] 2025-10-13 07:11:38,470 | INFO     | adding to output.list: log.46676269._093880.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/41/7f/log.46676269._093880.job.log.tg
[2025-10-13 03:12:37] 2025-10-13 07:11:38,471 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 03:12:37] 2025-10-13 07:11:38,471 | INFO     | summary of transferred files:
[2025-10-13 03:12:37] 2025-10-13 07:11:38,471 | INFO     |  -- lfn=log.46676269._093880.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 03:12:37] 2025-10-13 07:11:38,471 | INFO     | stage-out finished correctly
[2025-10-13 03:12:37] 2025-10-13 07:11:38,845 | INFO     | time since job start (4334s) is within the limit (172800.0s)
[2025-10-13 03:12:37] 2025-10-13 07:11:39,515 | WARNING  | process 26183 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 03:12:37] 2025-10-13 07:11:39,516 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841070075/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:12:37] 2025-10-13 07:11:39,602 | INFO     | number of running child processes to parent process 26183: 1
[2025-10-13 03:12:37] 2025-10-13 07:11:39,602 | INFO     | maximum number of monitored processes: 6
[2025-10-13 03:12:37] 2025-10-13 07:11:40,358 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 03:12:37] 2025-10-13 07:11:40,850 | INFO     | time since job start (4336s) is within the limit (172800.0s)
[2025-10-13 03:12:37] 2025-10-13 07:11:42,105 | INFO     | monitor loop #323: job 0:6841070075 is in state 'finished'
[2025-10-13 03:12:37] 2025-10-13 07:11:42,105 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:12:37] 2025-10-13 07:11:42,570 | INFO     | job 6841070075 has state=finished
[2025-10-13 03:12:37] 2025-10-13 07:11:42,571 | INFO     | preparing for final server update for job 6841070075 in state='finished'
[2025-10-13 03:12:37] 2025-10-13 07:11:42,571 | INFO     | this job has now completed (state=finished)
[2025-10-13 03:12:37] 2025-10-13 07:11:42,571 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 03:12:37] 2025-10-13 07:11:42,572 | INFO     | log transfer has been attempted: DONE
[2025-10-13 03:12:37] 2025-10-13 07:11:42,572 | INFO     | job 6841070075 has finished - writing final server update
[2025-10-13 03:12:37] 2025-10-13 07:11:42,572 | INFO     | total number of processed events: 400 (read)
[2025-10-13 03:12:37] 2025-10-13 07:11:42,573 | INFO     | executing command: lscpu
[2025-10-13 03:12:37] 2025-10-13 07:11:42,600 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 03:12:37] 2025-10-13 07:11:42,856 | INFO     | time since job start (4338s) is within the limit (172800.0s)
[2025-10-13 03:12:37] 2025-10-13 07:11:44,608 | INFO     | monitor loop #324: job 0:6841070075 is in state 'finished'
[2025-10-13 03:12:37] 2025-10-13 07:11:44,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:12:37] 2025-10-13 07:11:44,861 | INFO     | time since job start (4340s) is within the limit (172800.0s)
[2025-10-13 03:12:37] 2025-10-13 07:11:46,866 | INFO     | time since job start (4342s) is within the limit (172800.0s)
[2025-10-13 03:12:37] 2025-10-13 07:11:47,112 | INFO     | monitor loop #325: job 0:6841070075 is in state 'finished'
[2025-10-13 03:12:37] 2025-10-13 07:11:47,112 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:12:37] 2025-10-13 07:11:48,394 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 03:12:37] 2025-10-13 07:11:48,397 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.8333333333333
[2025-10-13 03:12:37] 2025-10-13 07:11:48,399 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841070075/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:12:37] 2025-10-13 07:11:48,400 | INFO     | extracted standard info from prmon json
[2025-10-13 03:12:37] 2025-10-13 07:11:48,400 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:12:37] 2025-10-13 07:11:48,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:12:37] 2025-10-13 07:11:48,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:12:37] 2025-10-13 07:11:48,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:12:37] 2025-10-13 07:11:48,402 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:12:37] 2025-10-13 07:11:48,402 | INFO     | sum of square deviations: 81266640.0
[2025-10-13 03:12:37] 2025-10-13 07:11:48,402 | INFO     | sum of deviations: -7083413940.0
[2025-10-13 03:12:37] 2025-10-13 07:11:48,402 | INFO     | mean x: 1760337419.5
[2025-10-13 03:12:37] 2025-10-13 07:11:48,403 | INFO     | mean y: 2800205.875
[2025-10-13 03:12:37] 2025-10-13 07:11:48,403 | INFO     | -- intersect: 153438436481.5956
[2025-10-13 03:12:37] 2025-10-13 07:11:48,403 | INFO     | intersect: 153438436481.5956
[2025-10-13 03:12:37] 2025-10-13 07:11:48,403 | INFO     | chi2: 0.0880165973352791
[2025-10-13 03:12:37] 2025-10-13 07:11:48,403 | INFO     | -- intersect: 153438436481.5956
[2025-10-13 03:12:37] 2025-10-13 07:11:48,403 | INFO     | current memory leak: -87.16 B/s (using 64 data points, chi2=0.09)
[2025-10-13 03:12:37] 2025-10-13 07:11:48,404 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-10-13 03:12:37] 2025-10-13 07:11:48,404 | INFO     | ..............................
[2025-10-13 03:12:37] 2025-10-13 07:11:48,404 | INFO     | . Timing measurements:
[2025-10-13 03:12:37] 2025-10-13 07:11:48,404 | INFO     | . get job = 0 s
[2025-10-13 03:12:37] 2025-10-13 07:11:48,404 | INFO     | . initial setup = 2 s
[2025-10-13 03:12:37] 2025-10-13 07:11:48,404 | INFO     | . payload setup = 7 s
[2025-10-13 03:12:37] 2025-10-13 07:11:48,404 | INFO     | . stage-in = 0 s
[2025-10-13 03:12:37] 2025-10-13 07:11:48,404 | INFO     | . payload execution = 4306 s
[2025-10-13 03:12:37] 2025-10-13 07:11:48,405 | INFO     | . stage-out = 0 s
[2025-10-13 03:12:37] 2025-10-13 07:11:48,405 | INFO     | . log creation = 0 s
[2025-10-13 03:12:37] 2025-10-13 07:11:48,405 | INFO     | ..............................
[2025-10-13 03:12:37] 2025-10-13 07:11:48,487 | INFO     | 
[2025-10-13 03:12:37] 2025-10-13 07:11:48,487 | INFO     | job summary report
[2025-10-13 03:12:37] 2025-10-13 07:11:48,487 | INFO     | --------------------------------------------------
[2025-10-13 03:12:37] 2025-10-13 07:11:48,487 | INFO     | PanDA job id: 6841070075
[2025-10-13 03:12:37] 2025-10-13 07:11:48,487 | INFO     | task id: 46676269
[2025-10-13 03:12:37] 2025-10-13 07:11:48,488 | INFO     | errors: (none)
[2025-10-13 03:12:37] 2025-10-13 07:11:48,488 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:12:37] 2025-10-13 07:11:48,488 | INFO     | pilot state: finished 
[2025-10-13 03:12:37] 2025-10-13 07:11:48,488 | INFO     | transexitcode: 0
[2025-10-13 03:12:37] 2025-10-13 07:11:48,488 | INFO     | exeerrorcode: 0
[2025-10-13 03:12:37] 2025-10-13 07:11:48,488 | INFO     | exeerrordiag: 
[2025-10-13 03:12:37] 2025-10-13 07:11:48,489 | INFO     | exitcode: 0
[2025-10-13 03:12:37] 2025-10-13 07:11:48,489 | INFO     | exitmsg: OK
[2025-10-13 03:12:37] 2025-10-13 07:11:48,489 | INFO     | cpuconsumptiontime: 45183 s
[2025-10-13 03:12:37] 2025-10-13 07:11:48,489 | INFO     | nevents: 400
[2025-10-13 03:12:37] 2025-10-13 07:11:48,489 | INFO     | neventsw: 0
[2025-10-13 03:12:37] 2025-10-13 07:11:48,489 | INFO     | pid: 26183
[2025-10-13 03:12:37] 2025-10-13 07:11:48,489 | INFO     | pgrp: 26183
[2025-10-13 03:12:37] 2025-10-13 07:11:48,490 | INFO     | corecount: 12
[2025-10-13 03:12:37] 2025-10-13 07:11:48,490 | INFO     | event service: False
[2025-10-13 03:12:37] 2025-10-13 07:11:48,490 | INFO     | sizes: {0: 2348856, 5: 2349118, 11: 2349174, 4316: 2375224, 4317: 2375223, 4318: 2384277, 4320: 2384461, 4328: 2384655}
[2025-10-13 03:12:37] 2025-10-13 07:11:48,490 | INFO     | --------------------------------------------------
[2025-10-13 03:12:37] 2025-10-13 07:11:48,490 | INFO     | 
[2025-10-13 03:12:37] 2025-10-13 07:11:48,490 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 03:12:37] 2025-10-13 07:11:48,515 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,516 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,516 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,516 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,516 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,517 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:12:37] 2025-10-13 07:11:48,518 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,518 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:12:37] 2025-10-13 07:11:48,518 | INFO     | job 6841070075 has completed (purged errors)
[2025-10-13 03:12:37] 2025-10-13 07:11:48,518 | INFO     | overall cleanup function is called
[2025-10-13 03:12:37] 2025-10-13 07:11:49,526 | INFO     | --- collectZombieJob: --- 10, [26183]
[2025-10-13 03:12:37] 2025-10-13 07:11:49,526 | INFO     | zombie collector waiting for pid 26183
[2025-10-13 03:12:37] 2025-10-13 07:11:49,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:12:37] 2025-10-13 07:11:49,527 | INFO     | collected zombie processes
[2025-10-13 03:12:37] 2025-10-13 07:11:49,527 | INFO     | will attempt to kill all subprocesses of pid=26183
[2025-10-13 03:12:37] 2025-10-13 07:11:49,619 | INFO     | process IDs to be killed: [26183] (in reverse order)
[2025-10-13 03:12:37] 2025-10-13 07:11:49,670 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:12:37] 2025-10-13 07:11:49,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:12:37] 2025-10-13 07:11:49,674 | INFO     | did not find any defunct processes belonging to 26183
[2025-10-13 03:12:37] 2025-10-13 07:11:49,677 | INFO     | did not find any defunct processes belonging to 26183
[2025-10-13 03:12:37] 2025-10-13 07:11:49,677 | INFO     | ready for new job
[2025-10-13 03:12:37] 2025-10-13 07:11:49,678 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:12:37] 2025-10-13 07:11:49,679 | INFO     | ***************************************
[2025-10-13 03:12:37] 2025-10-13 07:11:49,679 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:12:37] 2025-10-13 07:11:49,679 | INFO     | ***************************************
[2025-10-13 03:12:37] 2025-10-13 07:11:49,679 | INFO     | 
[2025-10-13 03:12:37] 2025-10-13 07:11:49,679 | INFO     | architecture information:
[2025-10-13 03:12:37] 2025-10-13 07:11:49,680 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:12:37] 2025-10-13 07:11:49,694 | INFO     | cat /etc/os-release:
[2025-10-13 03:12:37] NAME="CentOS Linux"
[2025-10-13 03:12:37] VERSION="7 (Core)"
[2025-10-13 03:12:37] ID="centos"
[2025-10-13 03:12:37] ID_LIKE="rhel fedora"
[2025-10-13 03:12:37] VERSION_ID="7"
[2025-10-13 03:12:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:12:37] ANSI_COLOR="0;31"
[2025-10-13 03:12:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:12:37] HOME_URL="https://www.centos.org/"
[2025-10-13 03:12:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:12:37] 
[2025-10-13 03:12:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:12:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:12:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:12:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:12:37] 
[2025-10-13 03:12:37] 2025-10-13 07:11:49,694 | INFO     | ***************************************
[2025-10-13 03:12:37] 2025-10-13 07:11:50,197 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 03:12:37] 2025-10-13 07:11:50,214 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-10-13 03:12:37] 2025-10-13 07:11:50,214 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:12:37] 2025-10-13 07:11:50,215 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:12:37] 2025-10-13 07:11:50,215 | INFO     | update_server=False
[2025-10-13 03:12:37] 2025-10-13 07:11:50,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:12:37] 2025-10-13 07:11:50,215 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:12:37] 2025-10-13 07:11:50,311 | INFO     | all job control threads have been joined
[2025-10-13 03:12:37] 2025-10-13 07:11:50,403 | INFO     | all data control threads have been joined
[2025-10-13 03:12:37] 2025-10-13 07:11:50,620 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:12:37] 2025-10-13 07:11:50,620 | INFO     | aborting loop
[2025-10-13 03:12:37] 2025-10-13 07:11:50,957 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:12:37] 2025-10-13 07:11:51,220 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:51,221 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:51,298 | INFO     | all payload control threads have been joined
[2025-10-13 03:12:37] 2025-10-13 07:11:51,317 | INFO     | [job] control thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:51,405 | INFO     | [data] control thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:51,508 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:51,510 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:51,570 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:12:37] 2025-10-13 07:11:51,625 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:51,651 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:52,119 | INFO     | [job] validate thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:52,304 | INFO     | [payload] control thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:52,541 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:52,545 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:52,551 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:53,576 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:11:54,964 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:12:00,956 | INFO     | job.realtimelogging is not enabled
[2025-10-13 03:12:37] 2025-10-13 07:12:01,962 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:12:37] 2025-10-13 07:12:20,065 | INFO     | PID=19820 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 03:12:37] 2025-10-13 07:12:20,066 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:12:37] 2025-10-13 07:12:20,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:12:37] 2025-10-13 07:12:20,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:12:37] 2025-10-13 07:12:30,632 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:12:37] 2025-10-13 07:12:31,836 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139798529460032)>', '<ExcThread(monitor, started 139797947471616)>']
[2025-10-13 03:12:37] 2025-10-13 07:12:32,120 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:12:37] 2025-10-13 07:12:32,121 | INFO     | [monitor] control thread has ended
[2025-10-13 03:12:37] 2025-10-13 07:12:36,848 | INFO     | all workflow threads have been joined
[2025-10-13 03:12:37] 2025-10-13 07:12:36,848 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:12:37] 2025-10-13 07:12:36,854 | INFO     | traces error code: 0
[2025-10-13 03:12:37] 2025-10-13 07:12:36,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:12:37] 2025-10-13 07:12:36,942 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:12:37] 2025-10-13 07:12:36,946 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:12:37] 2025-10-13 07:12:36,950 [wrapper] pilotpid: 19820
[2025-10-13 03:12:37] 2025-10-13 07:12:36,953 [wrapper] Pilot exit status: 0
[2025-10-13 03:12:37] 2025-10-13 07:12:36,969 [wrapper] pandaids: 6841070075
[2025-10-13 03:12:37] 2025-10-13 07:12:37,015 [wrapper] cleanup supervisor_pilot  2261 19821
[2025-10-13 03:12:37] 2025-10-13 07:12:37,020 [wrapper] Test setup, not cleaning
[2025-10-13 03:12:37] 2025-10-13 07:12:37,024 [wrapper] apfmon messages muted
[2025-10-13 03:12:37] 2025-10-13 07:12:37,028 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:12:37] 2025-10-13 07:12:37,032 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:12:37]  *** Error codes and diagnostics ***
[2025-10-13 03:12:37]     "exeErrorCode": 0,
[2025-10-13 03:12:37]     "exeErrorDiag": "",
[2025-10-13 03:12:37]     "pilotErrorCode": 0,
[2025-10-13 03:12:37]     "pilotErrorDiag": "",
[2025-10-13 03:12:37]  *** Listing of results directory ***
[2025-10-13 03:12:37] total 409684
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:48 pilot3.tar.gz
[2025-10-13 03:12:37] -rwx------ 1 boincer umatlas     36292 Oct 12 21:09 runpilot2-wrapper.sh
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 21:09 queuedata.json
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas       100 Oct 13 01:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:12:37] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 01:59 run_atlas
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas       105 Oct 13 01:59 job.xml
[2025-10-13 03:12:37] -rw-r--r-- 2 boincer umatlas 223382050 Oct 13 01:59 EVNT.46676267._004722.pool.root.1
[2025-10-13 03:12:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:59 start_atlas.sh
[2025-10-13 03:12:37] drwxrwx--x 2 boincer umatlas      4096 Oct 13 01:59 shared
[2025-10-13 03:12:37] -rw-r--r-- 2 boincer umatlas    569677 Oct 13 01:59 input.tar.gz
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas         0 Oct 13 01:59 boinc_lockfile
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 01:59 pandaJob.out
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas    973230 Oct 13 01:59 agis_schedconf.cvmfs.json
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas   1560580 Oct 13 01:59 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:12:37] drwx------ 5 boincer umatlas      4096 Oct 13 01:59 pilot3
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas 190227529 Oct 13 03:11 HITS.46676269._093880.pool.root.1
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas       529 Oct 13 03:11 boinc_task_state.xml
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas      1049 Oct 13 03:11 memory_monitor_summary.json
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas    370070 Oct 13 03:11 log.46676269._093880.job.log.tgz.1
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 03:11 init_data.xml
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas      7858 Oct 13 03:11 heartbeat.json
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas        95 Oct 13 03:12 pilot_heartbeat.json
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 03:12 boinc_mmap_file
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas        27 Oct 13 03:12 wrapper_checkpoint.txt
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas      4818 Oct 13 03:12 pilotlog.txt
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas    631625 Oct 13 03:12 log.46676269._093880.job.log.1
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas       357 Oct 13 03:12 output.list
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas       620 Oct 13 03:12 runtime_log
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas   1024000 Oct 13 03:12 result.tar.gz
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 03:12 runtime_log.err
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas       659 Oct 13 03:12 Nw9NDmXFMS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmrQVMDmpkPIMo.diag
[2025-10-13 03:12:37] -rw-r--r-- 1 boincer umatlas     22268 Oct 13 03:12 stderr.txt
[2025-10-13 03:12:37] HITS file was successfully produced:
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas 190227529 Oct 13 03:11 shared/HITS.pool.root.1
[2025-10-13 03:12:37]  *** Contents of shared directory: ***
[2025-10-13 03:12:37] total 405500
[2025-10-13 03:12:37] -rw-r--r-- 2 boincer umatlas 223382050 Oct 13 01:59 ATLAS.root_0
[2025-10-13 03:12:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:59 start_atlas.sh
[2025-10-13 03:12:37] -rw-r--r-- 2 boincer umatlas    569677 Oct 13 01:59 input.tar.gz
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas 190227529 Oct 13 03:11 HITS.pool.root.1
[2025-10-13 03:12:37] -rw------- 1 boincer umatlas   1024000 Oct 13 03:12 result.tar.gz
03:12:38 (16147): run_atlas exited; CPU time 45160.320824
03:12:38 (16147): called boinc_finish(0)

</stderr_txt>
]]>

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