Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:33:32 (3880893): wrapper (7.7.26015): starting
08:33:32 (3880893): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 08:33:32] Arguments: --nthreads 2
[2025-10-13 08:33:32] Threads: 2
[2025-10-13 08:33:32] Checking for CVMFS
[2025-10-13 08:33:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:33:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:33:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:33:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:33:34] 2.11.0.0 3851595 8 38724 151650 0 186 2441667 4194305 0 130560 0 91105 100.000 1 1 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 08:33:34] CVMFS is ok
[2025-10-13 08:33:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:33:34] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 08:33:34] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 08:33:34] Further information can be found at the LHC@home message board.
[2025-10-13 08:33:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:33:34] Checking for apptainer binary...
[2025-10-13 08:33:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:33:34] Running /usr/bin/apptainer --version
[2025-10-13 08:33:35] apptainer version 1.2.2-1.el8
[2025-10-13 08:33:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:33:36] bottom
[2025-10-13 08:33:36] apptainer works
[2025-10-13 08:33:36] Set ATHENA_PROC_NUMBER=2
[2025-10-13 08:33:36] Set ATHENA_CORE_NUMBER=2
[2025-10-13 08:33:36] Starting ATLAS job with PandaID=6840748797
[2025-10-13 08:33:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:41:12]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:41:12] 2025-10-13 06:40:38,787 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6840748797/memory_monitor_output.txt
[2025-10-13 08:41:12] 2025-10-13 06:40:38,788 | INFO     | memory summary dictionary not yet available
[2025-10-13 08:41:12] 2025-10-13 06:40:38,788 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:41:12] 2025-10-13 06:40:38,788 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | could have reported an average CPU frequency of 1762 MHz (4 samples)
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | ..............................
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | . Timing measurements:
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | . get job = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | . initial setup = 3 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . payload setup = 11 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . stage-in = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . payload execution = 175 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . stage-out = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . log creation = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | ..............................
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-13 08:41:12] 2025-10-13 06:40:38,791 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6840748797/pilotlog.txt
[2025-10-13 08:41:12] 2025-10-13 06:40:38,810 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-13 08:41:12] - Log from pilotlog.txt -
[2025-10-13 08:41:12] 2025-10-13 06:40:38,472 | INFO     | time since job start (397s) is within the limit (172800.0s)
[2025-10-13 08:41:12] 2025-10-13 06:40:38,773 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-13 08:41:12] 2025-10-13 06:40:38,786 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1504.0435
[2025-10-13 08:41:12] 2025-10-13 06:40:38,787 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6840748797/memory_monitor_output.txt
[2025-10-13 08:41:12] 2025-10-13 06:40:38,788 | INFO     | memory summary dictionary not yet available
[2025-10-13 08:41:12] 2025-10-13 06:40:38,788 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:41:12] 2025-10-13 06:40:38,788 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | could have reported an average CPU frequency of 1762 MHz (4 samples)
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | ..............................
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | . Timing measurements:
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | . get job = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | . initial setup = 3 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . payload setup = 11 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . stage-in = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . payload execution = 175 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . stage-out = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . log creation = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | ..............................
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-13 08:41:12] 2025-10-13 06:40:38,791 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6840748797/pilotlog.txt
[2025-10-13 08:41:12] 2025-10-13 06:40:38,810 | WARNING  | 
[2025-10-13 08:41:12] [begin log extracts]
[2025-10-13 08:41:12] - Log from pilotlog.txt -
[2025-10-13 08:41:12] 2025-10-13 06:40:38,472 | INFO     | time since job start (397s) is within the limit (172800.0s)
[2025-10-13 08:41:12] 2025-10-13 06:40:38,773 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-13 08:41:12] 2025-10-13 06:40:38,786 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1504.0435
[2025-10-13 08:41:12] 2025-10-13 06:40:38,787 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6840748797/memory_monitor_output.txt
[2025-10-13 08:41:12] 2025-10-13 06:40:38,788 | INFO     | memory summary dictionary not yet available
[2025-10-13 08:41:12] 2025-10-13 06:40:38,788 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:41:12] 2025-10-13 06:40:38,788 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | could have reported an average CPU frequency of 1762 MHz (4 samples)
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | ..............................
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | . Timing measurements:
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | . get job = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,789 | INFO     | . initial setup = 3 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . payload setup = 11 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . stage-in = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . payload execution = 175 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . stage-out = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | . log creation = 0 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | ..............................
[2025-10-13 08:41:12] 2025-10-13 06:40:38,790 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-13 08:41:12] 2025-10-13 06:40:38,791 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6840748797/pilotlog.txt
[2025-10-13 08:41:12] [end log extracts]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,811 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-13 08:41:12] 2025-10-13 06:40:38,812 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-13 08:41:12] 2025-10-13 06:40:38,945 | INFO     | 
[2025-10-13 08:41:12] 2025-10-13 06:40:38,946 | INFO     | job summary report
[2025-10-13 08:41:12] 2025-10-13 06:40:38,946 | INFO     | --------------------------------------------------
[2025-10-13 08:41:12] 2025-10-13 06:40:38,946 | INFO     | PanDA job id: 6840748797
[2025-10-13 08:41:12] 2025-10-13 06:40:38,946 | INFO     | task id: 46676269
[2025-10-13 08:41:12] 2025-10-13 06:40:38,946 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-13 08:37:21,822 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-13 08:41:12] 2025-10-13 06:40:38,946 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:41:12] 2025-10-13 06:40:38,946 | INFO     | pilot state: failed 
[2025-10-13 08:41:12] 2025-10-13 06:40:38,946 | INFO     | transexitcode: 65
[2025-10-13 08:41:12] 2025-10-13 06:40:38,947 | INFO     | exeerrorcode: 65
[2025-10-13 08:41:12] 2025-10-13 06:40:38,947 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-13 08:41:12] 2025-10-13 06:40:38,947 | INFO     | exitcode: 65
[2025-10-13 08:41:12] 2025-10-13 06:40:38,947 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-13 08:41:12] 2025-10-13 06:40:38,947 | INFO     | cpuconsumptiontime: 154 s
[2025-10-13 08:41:12] 2025-10-13 06:40:38,947 | INFO     | nevents: 0
[2025-10-13 08:41:12] 2025-10-13 06:40:38,947 | INFO     | neventsw: 0
[2025-10-13 08:41:12] 2025-10-13 06:40:38,948 | INFO     | pid: 3891018
[2025-10-13 08:41:12] 2025-10-13 06:40:38,948 | INFO     | pgrp: 3891018
[2025-10-13 08:41:12] 2025-10-13 06:40:38,948 | INFO     | corecount: 2
[2025-10-13 08:41:12] 2025-10-13 06:40:38,948 | INFO     | event service: False
[2025-10-13 08:41:12] 2025-10-13 06:40:38,948 | INFO     | sizes: {0: 2348635, 1: 2348834, 7: 2349096, 12: 2349124, 251: 2372473, 252: 2376768, 254: 2376952, 379: 2377118}
[2025-10-13 08:41:12] 2025-10-13 06:40:38,948 | INFO     | --------------------------------------------------
[2025-10-13 08:41:12] 2025-10-13 06:40:38,948 | INFO     | 
[2025-10-13 08:41:12] 2025-10-13 06:40:38,949 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-13 08:41:12] 2025-10-13 06:40:38,976 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,977 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,977 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,978 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,978 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,978 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,978 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,978 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,978 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,978 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,979 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,979 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,979 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,979 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,979 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:41:12] 2025-10-13 06:40:38,979 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,980 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:41:12] 2025-10-13 06:40:38,980 | INFO     | job 6840748797 has completed (purged errors)
[2025-10-13 08:41:12] 2025-10-13 06:40:38,980 | INFO     | overall cleanup function is called
[2025-10-13 08:41:12] 2025-10-13 06:40:39,987 | INFO     | --- collectZombieJob: --- 10, [3891018]
[2025-10-13 08:41:12] 2025-10-13 06:40:39,987 | INFO     | zombie collector waiting for pid 3891018
[2025-10-13 08:41:12] 2025-10-13 06:40:39,988 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:41:12] 2025-10-13 06:40:39,988 | INFO     | collected zombie processes
[2025-10-13 08:41:12] 2025-10-13 06:40:39,988 | INFO     | will attempt to kill all subprocesses of pid=3891018
[2025-10-13 08:41:12] 2025-10-13 06:40:40,061 | INFO     | process IDs to be killed: [3891018] (in reverse order)
[2025-10-13 08:41:12] 2025-10-13 06:40:40,107 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:41:12] 2025-10-13 06:40:40,108 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:41:12] 2025-10-13 06:40:40,111 | INFO     | did not find any defunct processes belonging to 3891018
[2025-10-13 08:41:12] 2025-10-13 06:40:40,114 | INFO     | did not find any defunct processes belonging to 3891018
[2025-10-13 08:41:12] 2025-10-13 06:40:40,115 | INFO     | ready for new job
[2025-10-13 08:41:12] 2025-10-13 06:40:40,115 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:41:12] 2025-10-13 06:40:40,116 | INFO     | ***************************************
[2025-10-13 08:41:12] 2025-10-13 06:40:40,117 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:41:12] 2025-10-13 06:40:40,117 | INFO     | ***************************************
[2025-10-13 08:41:12] 2025-10-13 06:40:40,117 | INFO     | 
[2025-10-13 08:41:12] 2025-10-13 06:40:40,128 | INFO     | architecture information:
[2025-10-13 08:41:12] 2025-10-13 06:40:40,129 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:41:12] 2025-10-13 06:40:40,186 | INFO     | cat /etc/os-release:
[2025-10-13 08:41:12] NAME="CentOS Linux"
[2025-10-13 08:41:12] VERSION="7 (Core)"
[2025-10-13 08:41:12] ID="centos"
[2025-10-13 08:41:12] ID_LIKE="rhel fedora"
[2025-10-13 08:41:12] VERSION_ID="7"
[2025-10-13 08:41:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:41:12] ANSI_COLOR="0;31"
[2025-10-13 08:41:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:41:12] HOME_URL="https://www.centos.org/"
[2025-10-13 08:41:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:41:12] 
[2025-10-13 08:41:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:41:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:41:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:41:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:41:12] 
[2025-10-13 08:41:12] 2025-10-13 06:40:40,187 | INFO     | ***************************************
[2025-10-13 08:41:12] 2025-10-13 06:40:40,690 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-13 08:41:12] 2025-10-13 06:40:40,752 | INFO     | sufficient remaining disk space (214312157184 B)
[2025-10-13 08:41:12] 2025-10-13 06:40:40,753 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:41:12] 2025-10-13 06:40:40,753 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:41:12] 2025-10-13 06:40:40,753 | INFO     | update_server=False
[2025-10-13 08:41:12] 2025-10-13 06:40:40,753 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:41:12] 2025-10-13 06:40:40,754 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:41:12] 2025-10-13 06:40:40,754 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:41:12] 2025-10-13 06:40:40,754 | INFO     | aborting loop
[2025-10-13 08:41:12] 2025-10-13 06:40:40,754 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:41:12] 2025-10-13 06:40:41,365 | INFO     | all payload control threads have been joined
[2025-10-13 08:41:12] 2025-10-13 06:40:41,416 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:41:12] 2025-10-13 06:40:41,565 | INFO     | all job control threads have been joined
[2025-10-13 08:41:12] 2025-10-13 06:40:41,644 | INFO     | all data control threads have been joined
[2025-10-13 08:41:12] 2025-10-13 06:40:41,759 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:41,759 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:41,759 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:41,849 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:41,912 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:42,370 | INFO     | [payload] control thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:42,382 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:42,463 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:42,571 | INFO     | [job] control thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:42,649 | INFO     | [data] control thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:42,760 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:42,903 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:42,964 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:42,999 | INFO     | [job] validate thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:43,061 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:40:45,423 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:41:12] 2025-10-13 06:41:01,501 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:41:12] 2025-10-13 06:41:01,984 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900262496064)>', '<ExcThread(monitor, started 139899223140096)>']
[2025-10-13 08:41:12] 2025-10-13 06:41:07,000 | INFO     | all workflow threads have been joined
[2025-10-13 08:41:12] 2025-10-13 06:41:07,000 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:41:12] 2025-10-13 06:41:07,000 | INFO     | traces error code: 0
[2025-10-13 08:41:12] 2025-10-13 06:41:07,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:41:12] 2025-10-13 06:41:11,636 | INFO     | PID=3884514 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 08:41:12] 2025-10-13 06:41:11,637 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:41:12] 2025-10-13 06:41:11,638 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:41:12] 2025-10-13 06:41:11,638 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:41:12] 2025-10-13 06:41:11,638 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:41:12] 2025-10-13 06:41:11,638 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 08:41:12] 2025-10-13 06:41:11,638 | INFO     | [monitor] control thread has ended
[2025-10-13 08:41:12] 2025-10-13 06:41:12,103 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:41:12] 2025-10-13 06:41:12,107 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:41:12] 2025-10-13 06:41:12,111 [wrapper] pilotpid: 3884514
[2025-10-13 08:41:12] 2025-10-13 06:41:12,114 [wrapper] Pilot exit status: 0
[2025-10-13 08:41:12] 2025-10-13 06:41:12,167 [wrapper] pandaids: 6840748797
[2025-10-13 08:41:12] 2025-10-13 06:41:12,194 [wrapper] cleanup supervisor_pilot 3884520 3884515
[2025-10-13 08:41:12] 2025-10-13 06:41:12,198 [wrapper] Test setup, not cleaning
[2025-10-13 08:41:12] 2025-10-13 06:41:12,202 [wrapper] apfmon messages muted
[2025-10-13 08:41:12] 2025-10-13 06:41:12,206 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:41:12] 2025-10-13 06:41:12,210 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:41:12]  *** Error codes and diagnostics ***
[2025-10-13 08:41:12]     "exeErrorCode": 65,
[2025-10-13 08:41:12]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-13 08:41:12]     "pilotErrorCode": 1305,
[2025-10-13 08:41:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-13 08:41:12]  *** Listing of results directory ***
[2025-10-13 08:41:12] total 221080
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc    557409 Oct 12 22:08 pilot3.tar.gz
[2025-10-13 08:41:12] -rwx------ 1 boinc boinc     36292 Oct 12 22:11 runpilot2-wrapper.sh
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc      5112 Oct 12 22:11 queuedata.json
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:41:12] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:33 run_atlas
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:33 job.xml
[2025-10-13 08:41:12] -rw-r--r-- 2 boinc boinc 222113958 Oct 13 08:33 EVNT.46676267._001436.pool.root.1
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc      5984 Oct 13 08:33 init_data.xml
[2025-10-13 08:41:12] -rw-r--r-- 2 boinc boinc    569677 Oct 13 08:33 input.tar.gz
[2025-10-13 08:41:12] drwxrwx--x 2 boinc boinc        68 Oct 13 08:33 shared
[2025-10-13 08:41:12] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:33 start_atlas.sh
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:33 boinc_lockfile
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc      2549 Oct 13 08:33 pandaJob.out
[2025-10-13 08:41:12] -rw------- 1 boinc boinc    973230 Oct 13 08:33 agis_schedconf.cvmfs.json
[2025-10-13 08:41:12] -rw------- 1 boinc boinc   1560580 Oct 13 08:33 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:41:12] drwx------ 5 boinc boinc      4096 Oct 13 08:34 pilot3
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc       524 Oct 13 08:37 boinc_task_state.xml
[2025-10-13 08:41:12] -rw------- 1 boinc boinc     47475 Oct 13 08:38 log.46676269._088363.job.log.tgz.1
[2025-10-13 08:41:12] -rw------- 1 boinc boinc      8058 Oct 13 08:40 heartbeat.json
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc        23 Oct 13 08:40 wrapper_checkpoint.txt
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc      8192 Oct 13 08:40 boinc_mmap_file
[2025-10-13 08:41:12] -rw------- 1 boinc boinc        95 Oct 13 08:41 pilot_heartbeat.json
[2025-10-13 08:41:12] -rw------- 1 boinc boinc       817 Oct 13 08:41 pilotlog.txt
[2025-10-13 08:41:12] -rw------- 1 boinc boinc    150610 Oct 13 08:41 log.46676269._088363.job.log.1
[2025-10-13 08:41:12] -rw------- 1 boinc boinc       188 Oct 13 08:41 output.list
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc       620 Oct 13 08:41 runtime_log
[2025-10-13 08:41:12] -rw------- 1 boinc boinc    215040 Oct 13 08:41 result.tar.gz
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc      8505 Oct 13 08:41 runtime_log.err
[2025-10-13 08:41:12] -rw------- 1 boinc boinc       640 Oct 13 08:41 HicNDmwaHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmjvUMDmXVPpUn.diag
[2025-10-13 08:41:12] -rw-r--r-- 1 boinc boinc     21862 Oct 13 08:41 stderr.txt
[2025-10-13 08:41:12] No HITS result produced
[2025-10-13 08:41:12]  *** Contents of shared directory: ***
[2025-10-13 08:41:12] total 217700
[2025-10-13 08:41:12] -rw-r--r-- 2 boinc boinc 222113958 Oct 13 08:33 ATLAS.root_0
[2025-10-13 08:41:12] -rw-r--r-- 2 boinc boinc    569677 Oct 13 08:33 input.tar.gz
[2025-10-13 08:41:12] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:33 start_atlas.sh
[2025-10-13 08:41:12] -rw------- 1 boinc boinc    215040 Oct 13 08:41 result.tar.gz
08:41:14 (3880893): run_atlas exited; CPU time 135.576625
08:41:14 (3880893): called boinc_finish(0)

</stderr_txt>
]]>

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