Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:16:41 (80091): wrapper (7.7.26015): starting
22:16:41 (80091): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 22:16:41] Arguments: --nthreads 6
[2025-10-13 22:16:41] Threads: 6
[2025-10-13 22:16:41] Checking for CVMFS
[2025-10-13 22:16:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 22:16:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 22:16:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 22:16:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 22:16:42] 2.12.7.0 249871 7359 94588 151662 2 11 14062901 20971521 929 130560 0 12514092 99.996 254065 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 22:16:42] CVMFS is ok
[2025-10-13 22:16:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 22:16:42] Checking for apptainer binary...
[2025-10-13 22:16:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 22:16:42] Running /usr/bin/apptainer --version
[2025-10-13 22:16:42] apptainer version 1.4.0-1.el9
[2025-10-13 22:16:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 22:16:42] testio005
[2025-10-13 22:16:42] apptainer works
[2025-10-13 22:16:42] Set ATHENA_PROC_NUMBER=6
[2025-10-13 22:16:42] Set ATHENA_CORE_NUMBER=6
[2025-10-13 22:16:42] Starting ATLAS job with PandaID=6841069453
[2025-10-13 22:16:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 23:42:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 23:42:29]  replicas=None
[2025-10-13 23:42:29]  scope=mc23_13p6TeV
[2025-10-13 23:42:29]  status=None
[2025-10-13 23:42:29]  status_code=0
[2025-10-13 23:42:29]  storage_token=
[2025-10-13 23:42:29]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6841069453/log.46676269._093585.job.log.tgz.1
[2025-10-13 23:42:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/f4/log.46676269._093585.job.log.tgz.1
[2025-10-13 23:42:29]  workdir=None
[2025-10-13 23:42:29] ]
[2025-10-13 23:42:29] 2025-10-13 14:41:48,928 | INFO     | transferring file log.46676269._093585.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6841069453/log.46676269._093585.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 23:42:29] 2025-10-13 14:41:48,929 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6841069453/log.46676269._093585.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._093585.job
[2025-10-13 23:42:29] 2025-10-13 14:41:48,942 | INFO     | adding to output.list: log.46676269._093585.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/f4/log.46676269._093585.job.log.tg
[2025-10-13 23:42:29] 2025-10-13 14:41:48,942 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 23:42:29] 2025-10-13 14:41:48,943 | INFO     | summary of transferred files:
[2025-10-13 23:42:29] 2025-10-13 14:41:48,943 | INFO     |  -- lfn=log.46676269._093585.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 23:42:29] 2025-10-13 14:41:48,943 | INFO     | stage-out finished correctly
[2025-10-13 23:42:29] 2025-10-13 14:41:49,681 | INFO     | time since job start (5092s) is within the limit (172800.0s)
[2025-10-13 23:42:29] 2025-10-13 14:41:50,044 | INFO     | monitor loop #378: job 0:6841069453 is in state 'finished'
[2025-10-13 23:42:29] 2025-10-13 14:41:50,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 23:42:29] 2025-10-13 14:41:51,686 | INFO     | time since job start (5094s) is within the limit (172800.0s)
[2025-10-13 23:42:29] 2025-10-13 14:41:52,006 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 23:42:29] 2025-10-13 14:41:52,552 | INFO     | monitor loop #379: job 0:6841069453 is in state 'finished'
[2025-10-13 23:42:29] 2025-10-13 14:41:52,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 23:42:29] 2025-10-13 14:41:53,692 | INFO     | time since job start (5096s) is within the limit (172800.0s)
[2025-10-13 23:42:29] 2025-10-13 14:41:53,802 | INFO     | job 6841069453 has state=finished
[2025-10-13 23:42:29] 2025-10-13 14:41:53,802 | INFO     | preparing for final server update for job 6841069453 in state='finished'
[2025-10-13 23:42:29] 2025-10-13 14:41:53,803 | INFO     | this job has now completed (state=finished)
[2025-10-13 23:42:29] 2025-10-13 14:41:53,803 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 23:42:29] 2025-10-13 14:41:53,803 | INFO     | log transfer has been attempted: DONE
[2025-10-13 23:42:29] 2025-10-13 14:41:53,803 | INFO     | job 6841069453 has finished - writing final server update
[2025-10-13 23:42:29] 2025-10-13 14:41:53,803 | INFO     | total number of processed events: 400 (read)
[2025-10-13 23:42:29] 2025-10-13 14:41:53,804 | INFO     | executing command: lscpu
[2025-10-13 23:42:29] 2025-10-13 14:41:53,828 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 23:42:29] 2025-10-13 14:41:55,054 | INFO     | monitor loop #380: job 0:6841069453 is in state 'finished'
[2025-10-13 23:42:29] 2025-10-13 14:41:55,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 23:42:29] 2025-10-13 14:41:55,697 | INFO     | time since job start (5098s) is within the limit (172800.0s)
[2025-10-13 23:42:29] 2025-10-13 14:41:57,038 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 23:42:29] 2025-10-13 14:41:57,040 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3301.632375
[2025-10-13 23:42:29] 2025-10-13 14:41:57,043 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6841069453/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 23:42:29] 2025-10-13 14:41:57,043 | INFO     | extracted standard info from prmon json
[2025-10-13 23:42:29] 2025-10-13 14:41:57,043 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 23:42:29] 2025-10-13 14:41:57,043 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 23:42:29] 2025-10-13 14:41:57,044 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 23:42:29] 2025-10-13 14:41:57,044 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 23:42:29] 2025-10-13 14:41:57,045 | INFO     | fitting pss+swap vs Time
[2025-10-13 23:42:29] 2025-10-13 14:41:57,045 | INFO     | sum of square deviations: 141539398.0
[2025-10-13 23:42:29] 2025-10-13 14:41:57,045 | INFO     | sum of deviations: -12429639502.0
[2025-10-13 23:42:29] 2025-10-13 14:41:57,045 | INFO     | mean x: 1760364063.0
[2025-10-13 23:42:29] 2025-10-13 14:41:57,045 | INFO     | mean y: 2589570.25974026
[2025-10-13 23:42:29] 2025-10-13 14:41:57,045 | INFO     | -- intersect: 154593403185.0387
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | intersect: 154593403185.0387
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | chi2: 0.05884919604579438
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | -- intersect: 154593403185.0387
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | current memory leak: -87.82 B/s (using 77 data points, chi2=0.06)
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | could have reported an average CPU frequency of 3320 MHz (6 samples)
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | ..............................
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | . Timing measurements:
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | . get job = 0 s
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | . initial setup = 8 s
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | . payload setup = 4 s
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | . stage-in = 0 s
[2025-10-13 23:42:29] 2025-10-13 14:41:57,046 | INFO     | . payload execution = 5067 s
[2025-10-13 23:42:29] 2025-10-13 14:41:57,047 | INFO     | . stage-out = 0 s
[2025-10-13 23:42:29] 2025-10-13 14:41:57,047 | INFO     | . log creation = 0 s
[2025-10-13 23:42:29] 2025-10-13 14:41:57,047 | INFO     | ..............................
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | 
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | job summary report
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | --------------------------------------------------
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | PanDA job id: 6841069453
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | task id: 46676269
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | errors: (none)
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | pilot state: finished 
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | transexitcode: 0
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | exeerrorcode: 0
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | exeerrordiag: 
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | exitcode: 0
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | exitmsg: OK
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | cpuconsumptiontime: 28120 s
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | nevents: 400
[2025-10-13 23:42:29] 2025-10-13 14:41:57,108 | INFO     | neventsw: 0
[2025-10-13 23:42:29] 2025-10-13 14:41:57,109 | INFO     | pid: 90628
[2025-10-13 23:42:29] 2025-10-13 14:41:57,109 | INFO     | pgrp: 90628
[2025-10-13 23:42:29] 2025-10-13 14:41:57,109 | INFO     | corecount: 6
[2025-10-13 23:42:29] 2025-10-13 14:41:57,109 | INFO     | event service: False
[2025-10-13 23:42:29] 2025-10-13 14:41:57,109 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 5076: 2375536, 5078: 2384534, 5081: 2384590, 5086: 2384912}
[2025-10-13 23:42:29] 2025-10-13 14:41:57,109 | INFO     | --------------------------------------------------
[2025-10-13 23:42:29] 2025-10-13 14:41:57,109 | INFO     | 
[2025-10-13 23:42:29] 2025-10-13 14:41:57,109 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 23:42:29] 2025-10-13 14:41:57,122 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,122 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,122 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,123 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,123 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,123 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,123 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,123 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,123 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,124 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,124 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,124 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,124 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,124 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 23:42:29] 2025-10-13 14:41:57,124 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,124 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 23:42:29] 2025-10-13 14:41:57,124 | INFO     | job 6841069453 has completed (purged errors)
[2025-10-13 23:42:29] 2025-10-13 14:41:57,124 | INFO     | overall cleanup function is called
[2025-10-13 23:42:29] 2025-10-13 14:41:58,132 | INFO     | --- collectZombieJob: --- 10, [90628]
[2025-10-13 23:42:29] 2025-10-13 14:41:58,132 | INFO     | zombie collector waiting for pid 90628
[2025-10-13 23:42:29] 2025-10-13 14:41:58,132 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 23:42:29] 2025-10-13 14:41:58,132 | INFO     | collected zombie processes
[2025-10-13 23:42:29] 2025-10-13 14:41:58,132 | INFO     | will attempt to kill all subprocesses of pid=90628
[2025-10-13 23:42:29] 2025-10-13 14:41:58,217 | INFO     | process IDs to be killed: [90628] (in reverse order)
[2025-10-13 23:42:29] 2025-10-13 14:41:58,260 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 23:42:29] 2025-10-13 14:41:58,260 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 23:42:29] 2025-10-13 14:41:58,263 | INFO     | did not find any defunct processes belonging to 90628
[2025-10-13 23:42:29] 2025-10-13 14:41:58,266 | INFO     | did not find any defunct processes belonging to 90628
[2025-10-13 23:42:29] 2025-10-13 14:41:58,267 | INFO     | ready for new job
[2025-10-13 23:42:29] 2025-10-13 14:41:58,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 23:42:29] 2025-10-13 14:41:58,268 | INFO     | ***************************************
[2025-10-13 23:42:29] 2025-10-13 14:41:58,268 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 23:42:29] 2025-10-13 14:41:58,268 | INFO     | ***************************************
[2025-10-13 23:42:29] 2025-10-13 14:41:58,268 | INFO     | 
[2025-10-13 23:42:29] 2025-10-13 14:41:58,269 | INFO     | architecture information:
[2025-10-13 23:42:29] 2025-10-13 14:41:58,269 | INFO     | executing command: cat /etc/os-release
[2025-10-13 23:42:29] 2025-10-13 14:41:58,280 | INFO     | cat /etc/os-release:
[2025-10-13 23:42:29] NAME="CentOS Linux"
[2025-10-13 23:42:29] VERSION="7 (Core)"
[2025-10-13 23:42:29] ID="centos"
[2025-10-13 23:42:29] ID_LIKE="rhel fedora"
[2025-10-13 23:42:29] VERSION_ID="7"
[2025-10-13 23:42:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 23:42:29] ANSI_COLOR="0;31"
[2025-10-13 23:42:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 23:42:29] HOME_URL="https://www.centos.org/"
[2025-10-13 23:42:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 23:42:29] 
[2025-10-13 23:42:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 23:42:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 23:42:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 23:42:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 23:42:29] 
[2025-10-13 23:42:29] 2025-10-13 14:41:58,280 | INFO     | ***************************************
[2025-10-13 23:42:29] 2025-10-13 14:41:58,783 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 23:42:29] 2025-10-13 14:41:58,796 | INFO     | sufficient remaining disk space (97651785728 B)
[2025-10-13 23:42:29] 2025-10-13 14:41:58,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 23:42:29] 2025-10-13 14:41:58,796 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 23:42:29] 2025-10-13 14:41:58,796 | INFO     | update_server=False
[2025-10-13 23:42:29] 2025-10-13 14:41:58,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 23:42:29] 2025-10-13 14:41:58,796 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:42:29] 2025-10-13 14:41:58,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 23:42:29] 2025-10-13 14:41:58,797 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:42:29] 2025-10-13 14:41:58,797 | INFO     | aborting loop
[2025-10-13 23:42:29] 2025-10-13 14:41:58,887 | INFO     | all payload control threads have been joined
[2025-10-13 23:42:29] 2025-10-13 14:41:59,220 | INFO     | all data control threads have been joined
[2025-10-13 23:42:29] 2025-10-13 14:41:59,241 | INFO     | all job control threads have been joined
[2025-10-13 23:42:29] 2025-10-13 14:41:59,525 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 23:42:29] 2025-10-13 14:41:59,802 | INFO     | [job] retrieve thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:41:59,802 | INFO     | [job] queue monitor thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:41:59,802 | INFO     | [job] job monitor thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:41:59,893 | INFO     | [payload] control thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:41:59,991 | INFO     | [payload] failed_post thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:00,071 | INFO     | [data] copytool_in thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:00,226 | INFO     | [data] control thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:00,246 | INFO     | [job] control thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:00,316 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:00,722 | INFO     | [job] validate thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:00,893 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:01,079 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:01,194 | INFO     | [payload] validate_post thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:01,266 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:01,530 | INFO     | [data] copytool_out thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:02,803 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 23:42:29] 2025-10-13 14:42:03,634 | INFO     | [monitor] cgroup control has ended
[2025-10-13 23:42:29] 2025-10-13 14:42:04,692 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140567496521536)>', '<ExcThread(monitor, started 140566989874944)>']
[2025-10-13 23:42:29] 2025-10-13 14:42:09,718 | INFO     | all workflow threads have been joined
[2025-10-13 23:42:29] 2025-10-13 14:42:09,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 23:42:29] 2025-10-13 14:42:09,718 | INFO     | traces error code: 0
[2025-10-13 23:42:29] 2025-10-13 14:42:09,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 23:42:29] 2025-10-13 14:42:28,862 | INFO     | PID=83880 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 23:42:29] 2025-10-13 14:42:28,862 | INFO     | .. there are 2 such processes running
[2025-10-13 23:42:29] 2025-10-13 14:42:28,862 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 23:42:29] 2025-10-13 14:42:28,862 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 23:42:29] 2025-10-13 14:42:28,862 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 23:42:29] 2025-10-13 14:42:28,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 23:42:29] 2025-10-13 14:42:28,863 | INFO     | [monitor] control thread has ended
[2025-10-13 23:42:29] 2025-10-13 14:42:28,936 [wrapper] ==== pilot stdout END ====
[2025-10-13 23:42:29] 2025-10-13 14:42:28,938 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 23:42:29] 2025-10-13 14:42:28,940 [wrapper] pilotpid: 83880
[2025-10-13 23:42:29] 2025-10-13 14:42:28,942 [wrapper] Pilot exit status: 0
[2025-10-13 23:42:29] 2025-10-13 14:42:28,950 [wrapper] pandaids: 6841069453
[2025-10-13 23:42:29] 2025-10-13 14:42:28,972 [wrapper] cleanup supervisor_pilot  125102 83881
[2025-10-13 23:42:29] 2025-10-13 14:42:28,974 [wrapper] Test setup, not cleaning
[2025-10-13 23:42:29] 2025-10-13 14:42:28,976 [wrapper] apfmon messages muted
[2025-10-13 23:42:29] 2025-10-13 14:42:28,979 [wrapper] ==== wrapper stdout END ====
[2025-10-13 23:42:29] 2025-10-13 14:42:28,980 [wrapper] ==== wrapper stderr END ====
[2025-10-13 23:42:29]  *** Error codes and diagnostics ***
[2025-10-13 23:42:29]     "exeErrorCode": 0,
[2025-10-13 23:42:29]     "exeErrorDiag": "",
[2025-10-13 23:42:29]     "pilotErrorCode": 0,
[2025-10-13 23:42:29]     "pilotErrorDiag": "",
[2025-10-13 23:42:29]  *** Listing of results directory ***
[2025-10-13 23:42:29] total 404576
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc    557409 Oct 13 09:48 pilot3.tar.gz
[2025-10-13 23:42:29] -rwx------. 1 boinc boinc     36292 Oct 13 09:57 runpilot2-wrapper.sh
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc      5112 Oct 13 09:57 queuedata.json
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc       100 Oct 13 22:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 23:42:29] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 22:16 run_atlas
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc       105 Oct 13 22:16 job.xml
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc      9362 Oct 13 22:16 init_data.xml
[2025-10-13 23:42:29] -rw-r--r--. 2 boinc boinc 224788904 Oct 13 22:16 EVNT.46676267._004710.pool.root.1
[2025-10-13 23:42:29] -rw-r--r--. 2 boinc boinc     15120 Oct 13 22:16 start_atlas.sh
[2025-10-13 23:42:29] drwxrwx--x. 2 boinc boinc        68 Oct 13 22:16 shared
[2025-10-13 23:42:29] -rw-r--r--. 2 boinc boinc    569684 Oct 13 22:16 input.tar.gz
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc         0 Oct 13 22:16 boinc_lockfile
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc      2550 Oct 13 22:16 pandaJob.out
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc    972489 Oct 13 22:16 agis_schedconf.cvmfs.json
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc   1560580 Oct 13 22:16 agis_ddmendpoints.agis.ALL.json
[2025-10-13 23:42:29] drwx------. 5 boinc boinc      4096 Oct 13 22:16 pilot3
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc 183525237 Oct 13 23:41 HITS.46676269._093585.pool.root.1
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc        95 Oct 13 23:41 pilot_heartbeat.json
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc       529 Oct 13 23:41 boinc_task_state.xml
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc      1015 Oct 13 23:41 memory_monitor_summary.json
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc    296668 Oct 13 23:41 log.46676269._093585.job.log.tgz.1
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc      7751 Oct 13 23:41 heartbeat.json
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc        27 Oct 13 23:42 wrapper_checkpoint.txt
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc      8192 Oct 13 23:42 boinc_mmap_file
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc       820 Oct 13 23:42 pilotlog.txt
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc    744782 Oct 13 23:42 log.46676269._093585.job.log.1
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc       357 Oct 13 23:42 output.list
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc       620 Oct 13 23:42 runtime_log
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc   1064960 Oct 13 23:42 result.tar.gz
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc       642 Oct 13 23:42 zpEODmL3LS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm3PVMDmt9muKn.diag
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc      8661 Oct 13 23:42 runtime_log.err
[2025-10-13 23:42:29] -rw-r--r--. 1 boinc boinc     21491 Oct 13 23:42 stderr.txt
[2025-10-13 23:42:29] HITS file was successfully produced:
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc 183525237 Oct 13 23:41 shared/HITS.pool.root.1
[2025-10-13 23:42:29]  *** Contents of shared directory: ***
[2025-10-13 23:42:29] total 400364
[2025-10-13 23:42:29] -rw-r--r--. 2 boinc boinc 224788904 Oct 13 22:16 ATLAS.root_0
[2025-10-13 23:42:29] -rw-r--r--. 2 boinc boinc     15120 Oct 13 22:16 start_atlas.sh
[2025-10-13 23:42:29] -rw-r--r--. 2 boinc boinc    569684 Oct 13 22:16 input.tar.gz
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc 183525237 Oct 13 23:41 HITS.pool.root.1
[2025-10-13 23:42:29] -rw-------. 1 boinc boinc   1064960 Oct 13 23:42 result.tar.gz
23:42:30 (80091): run_atlas exited; CPU time 28174.541359
23:42:30 (80091): called boinc_finish(0)

</stderr_txt>
]]>

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