Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:53:20 (24350): wrapper (7.7.26015): starting
01:53:20 (24350): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 01:53:20] Arguments: --nthreads 8
[2025-10-13 01:53:20] Threads: 8
[2025-10-13 01:53:20] Checking for CVMFS
[2025-10-13 01:53:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:53:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:53:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:53:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:53:20] 2.11.2.0 3213 628864 246944 151650 0 188 11598872 20275201 917 130560 1 361489668 99.992 26099201 20188 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 01:53:20] CVMFS is ok
[2025-10-13 01:53:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:53:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:53:20] Further information can be found at the LHC@home message board.
[2025-10-13 01:53:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:53:20] Checking for apptainer binary...
[2025-10-13 01:53:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:53:20] Running /usr/bin/apptainer --version
[2025-10-13 01:53:20] apptainer version 1.3.2-1.el7
[2025-10-13 01:53:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:53:21] c-205-38.aglt2.org
[2025-10-13 01:53:21] apptainer works
[2025-10-13 01:53:21] Set ATHENA_PROC_NUMBER=8
[2025-10-13 01:53:21] Set ATHENA_CORE_NUMBER=8
[2025-10-13 01:53:21] Starting ATLAS job with PandaID=6840850841
[2025-10-13 01:53:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:49:42]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:49:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 02:49:42]  replicas=None
[2025-10-13 02:49:42]  scope=mc23_13p6TeV
[2025-10-13 02:49:42]  status=None
[2025-10-13 02:49:42]  status_code=0
[2025-10-13 02:49:42]  storage_token=
[2025-10-13 02:49:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840850841/log.46676269._090789.job.log.tgz.1
[2025-10-13 02:49:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/aa/log.46676269._090789.job.log.tgz.1
[2025-10-13 02:49:42]  workdir=None
[2025-10-13 02:49:42] ]
[2025-10-13 02:49:42] 2025-10-13 06:49:04,860 | INFO     | transferring file log.46676269._090789.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840850841/log.46676269._090789.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 02:49:42] 2025-10-13 06:49:04,860 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840850841/log.46676269._090789.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._090789.job
[2025-10-13 02:49:42] 2025-10-13 06:49:04,878 | INFO     | adding to output.list: log.46676269._090789.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/aa/log.46676269._090789.job.log.tg
[2025-10-13 02:49:42] 2025-10-13 06:49:04,879 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 02:49:42] 2025-10-13 06:49:04,879 | INFO     | summary of transferred files:
[2025-10-13 02:49:42] 2025-10-13 06:49:04,879 | INFO     |  -- lfn=log.46676269._090789.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 02:49:42] 2025-10-13 06:49:04,880 | INFO     | stage-out finished correctly
[2025-10-13 02:49:42] 2025-10-13 06:49:04,894 | INFO     | time since job start (3335s) is within the limit (172800.0s)
[2025-10-13 02:49:42] 2025-10-13 06:49:06,221 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 02:49:42] 2025-10-13 06:49:06,756 | INFO     | job 6840850841 has state=finished
[2025-10-13 02:49:42] 2025-10-13 06:49:06,757 | INFO     | preparing for final server update for job 6840850841 in state='finished'
[2025-10-13 02:49:42] 2025-10-13 06:49:06,757 | INFO     | this job has now completed (state=finished)
[2025-10-13 02:49:42] 2025-10-13 06:49:06,758 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 02:49:42] 2025-10-13 06:49:06,758 | INFO     | log transfer has been attempted: DONE
[2025-10-13 02:49:42] 2025-10-13 06:49:06,758 | INFO     | job 6840850841 has finished - writing final server update
[2025-10-13 02:49:42] 2025-10-13 06:49:06,758 | INFO     | total number of processed events: 400 (read)
[2025-10-13 02:49:42] 2025-10-13 06:49:06,759 | INFO     | executing command: lscpu
[2025-10-13 02:49:42] 2025-10-13 06:49:06,790 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 02:49:42] 2025-10-13 06:49:06,904 | INFO     | time since job start (3337s) is within the limit (172800.0s)
[2025-10-13 02:49:42] 2025-10-13 06:49:07,253 | INFO     | monitor loop #256: job 0:6840850841 is in state 'finished'
[2025-10-13 02:49:42] 2025-10-13 06:49:07,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:49:42] 2025-10-13 06:49:08,905 | INFO     | time since job start (3339s) is within the limit (172800.0s)
[2025-10-13 02:49:42] 2025-10-13 06:49:09,756 | INFO     | monitor loop #257: job 0:6840850841 is in state 'finished'
[2025-10-13 02:49:42] 2025-10-13 06:49:09,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:49:42] 2025-10-13 06:49:10,178 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 02:49:42] 2025-10-13 06:49:10,180 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2924.1695625
[2025-10-13 02:49:42] 2025-10-13 06:49:10,182 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840850841/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 02:49:42] 2025-10-13 06:49:10,183 | INFO     | extracted standard info from prmon json
[2025-10-13 02:49:42] 2025-10-13 06:49:10,183 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 02:49:42] 2025-10-13 06:49:10,183 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 02:49:42] 2025-10-13 06:49:10,183 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 02:49:42] 2025-10-13 06:49:10,183 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 02:49:42] 2025-10-13 06:49:10,184 | INFO     | fitting pss+swap vs Time
[2025-10-13 02:49:42] 2025-10-13 06:49:10,185 | INFO     | sum of square deviations: 34277852.0
[2025-10-13 02:49:42] 2025-10-13 06:49:10,185 | INFO     | sum of deviations: -923269648.0
[2025-10-13 02:49:42] 2025-10-13 06:49:10,185 | INFO     | mean x: 1760336567.5
[2025-10-13 02:49:42] 2025-10-13 06:49:10,185 | INFO     | mean y: 2638925.2083333335
[2025-10-13 02:49:42] 2025-10-13 06:49:10,185 | INFO     | -- intersect: 47417083769.571785
[2025-10-13 02:49:42] 2025-10-13 06:49:10,185 | INFO     | intersect: 47417083769.571785
[2025-10-13 02:49:42] 2025-10-13 06:49:10,185 | INFO     | chi2: 0.025776510690585144
[2025-10-13 02:49:42] 2025-10-13 06:49:10,185 | INFO     | -- intersect: 47417083769.571785
[2025-10-13 02:49:42] 2025-10-13 06:49:10,185 | INFO     | current memory leak: -26.93 B/s (using 48 data points, chi2=0.03)
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | could have reported an average CPU frequency of 3009 MHz (5 samples)
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | ..............................
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | . Timing measurements:
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | . get job = 0 s
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | . initial setup = 2 s
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | . payload setup = 3 s
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | . stage-in = 0 s
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | . payload execution = 3313 s
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | . stage-out = 0 s
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | . log creation = 0 s
[2025-10-13 02:49:42] 2025-10-13 06:49:10,186 | INFO     | ..............................
[2025-10-13 02:49:42] 2025-10-13 06:49:10,240 | INFO     | 
[2025-10-13 02:49:42] 2025-10-13 06:49:10,241 | INFO     | job summary report
[2025-10-13 02:49:42] 2025-10-13 06:49:10,241 | INFO     | --------------------------------------------------
[2025-10-13 02:49:42] 2025-10-13 06:49:10,241 | INFO     | PanDA job id: 6840850841
[2025-10-13 02:49:42] 2025-10-13 06:49:10,241 | INFO     | task id: 46676269
[2025-10-13 02:49:42] 2025-10-13 06:49:10,241 | INFO     | errors: (none)
[2025-10-13 02:49:42] 2025-10-13 06:49:10,241 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 02:49:42] 2025-10-13 06:49:10,241 | INFO     | pilot state: finished 
[2025-10-13 02:49:42] 2025-10-13 06:49:10,242 | INFO     | transexitcode: 0
[2025-10-13 02:49:42] 2025-10-13 06:49:10,242 | INFO     | exeerrorcode: 0
[2025-10-13 02:49:42] 2025-10-13 06:49:10,242 | INFO     | exeerrordiag: 
[2025-10-13 02:49:42] 2025-10-13 06:49:10,242 | INFO     | exitcode: 0
[2025-10-13 02:49:42] 2025-10-13 06:49:10,242 | INFO     | exitmsg: OK
[2025-10-13 02:49:42] 2025-10-13 06:49:10,242 | INFO     | cpuconsumptiontime: 24030 s
[2025-10-13 02:49:42] 2025-10-13 06:49:10,242 | INFO     | nevents: 400
[2025-10-13 02:49:42] 2025-10-13 06:49:10,242 | INFO     | neventsw: 0
[2025-10-13 02:49:42] 2025-10-13 06:49:10,242 | INFO     | pid: 1993
[2025-10-13 02:49:42] 2025-10-13 06:49:10,243 | INFO     | pgrp: 1993
[2025-10-13 02:49:42] 2025-10-13 06:49:10,243 | INFO     | corecount: 8
[2025-10-13 02:49:42] 2025-10-13 06:49:10,243 | INFO     | event service: False
[2025-10-13 02:49:42] 2025-10-13 06:49:10,243 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 3320: 2374816, 3323: 2383814, 3324: 2383870, 3328: 2384224}
[2025-10-13 02:49:42] 2025-10-13 06:49:10,243 | INFO     | --------------------------------------------------
[2025-10-13 02:49:42] 2025-10-13 06:49:10,243 | INFO     | 
[2025-10-13 02:49:42] 2025-10-13 06:49:10,243 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 02:49:42] 2025-10-13 06:49:10,263 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,263 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,263 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,263 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,263 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,264 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,264 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,264 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,264 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,264 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,264 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,264 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,265 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,265 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,265 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,265 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,265 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:49:42] 2025-10-13 06:49:10,265 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,265 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:49:42] 2025-10-13 06:49:10,265 | INFO     | job 6840850841 has completed (purged errors)
[2025-10-13 02:49:42] 2025-10-13 06:49:10,266 | INFO     | overall cleanup function is called
[2025-10-13 02:49:42] 2025-10-13 06:49:11,270 | INFO     | --- collectZombieJob: --- 10, [1993]
[2025-10-13 02:49:42] 2025-10-13 06:49:11,270 | INFO     | zombie collector waiting for pid 1993
[2025-10-13 02:49:42] 2025-10-13 06:49:11,271 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:49:42] 2025-10-13 06:49:11,271 | INFO     | collected zombie processes
[2025-10-13 02:49:42] 2025-10-13 06:49:11,271 | INFO     | will attempt to kill all subprocesses of pid=1993
[2025-10-13 02:49:42] 2025-10-13 06:49:11,369 | INFO     | process IDs to be killed: [1993] (in reverse order)
[2025-10-13 02:49:42] 2025-10-13 06:49:11,417 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:49:42] 2025-10-13 06:49:11,418 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:49:42] 2025-10-13 06:49:11,420 | INFO     | did not find any defunct processes belonging to 1993
[2025-10-13 02:49:42] 2025-10-13 06:49:11,422 | INFO     | did not find any defunct processes belonging to 1993
[2025-10-13 02:49:42] 2025-10-13 06:49:11,422 | INFO     | ready for new job
[2025-10-13 02:49:42] 2025-10-13 06:49:11,422 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:49:42] 2025-10-13 06:49:11,424 | INFO     | ***************************************
[2025-10-13 02:49:42] 2025-10-13 06:49:11,424 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:49:42] 2025-10-13 06:49:11,424 | INFO     | ***************************************
[2025-10-13 02:49:42] 2025-10-13 06:49:11,424 | INFO     | 
[2025-10-13 02:49:42] 2025-10-13 06:49:11,425 | INFO     | architecture information:
[2025-10-13 02:49:42] 2025-10-13 06:49:11,425 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:49:42] 2025-10-13 06:49:11,440 | INFO     | cat /etc/os-release:
[2025-10-13 02:49:42] NAME="CentOS Linux"
[2025-10-13 02:49:42] VERSION="7 (Core)"
[2025-10-13 02:49:42] ID="centos"
[2025-10-13 02:49:42] ID_LIKE="rhel fedora"
[2025-10-13 02:49:42] VERSION_ID="7"
[2025-10-13 02:49:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:49:42] ANSI_COLOR="0;31"
[2025-10-13 02:49:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:49:42] HOME_URL="https://www.centos.org/"
[2025-10-13 02:49:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:49:42] 
[2025-10-13 02:49:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:49:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:49:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:49:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:49:42] 
[2025-10-13 02:49:42] 2025-10-13 06:49:11,440 | INFO     | ***************************************
[2025-10-13 02:49:42] 2025-10-13 06:49:11,943 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 02:49:42] 2025-10-13 06:49:11,959 | INFO     | sufficient remaining disk space (32785825792 B)
[2025-10-13 02:49:42] 2025-10-13 06:49:11,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:49:42] 2025-10-13 06:49:11,960 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:49:42] 2025-10-13 06:49:11,960 | INFO     | update_server=False
[2025-10-13 02:49:42] 2025-10-13 06:49:11,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:49:42] 2025-10-13 06:49:11,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:49:42] 2025-10-13 06:49:12,259 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 02:49:42] 2025-10-13 06:49:12,259 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 02:49:42] 2025-10-13 06:49:12,260 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:49:42] 2025-10-13 06:49:12,260 | INFO     | will abort loop
[2025-10-13 02:49:42] 2025-10-13 06:49:12,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:49:42] 2025-10-13 06:49:12,335 | INFO     | all job control threads have been joined
[2025-10-13 02:49:42] 2025-10-13 06:49:12,706 | INFO     | all data control threads have been joined
[2025-10-13 02:49:42] 2025-10-13 06:49:12,961 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:12,966 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:12,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:49:42] 2025-10-13 06:49:13,264 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:13,340 | INFO     | [job] control thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:13,455 | INFO     | all payload control threads have been joined
[2025-10-13 02:49:42] 2025-10-13 06:49:13,518 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:13,558 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:13,606 | INFO     | [job] validate thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:13,618 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:13,711 | INFO     | [data] control thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:13,861 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:13,861 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:14,018 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:14,460 | INFO     | [payload] control thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:14,566 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:14,981 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:16,322 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:49:42] 2025-10-13 06:49:33,889 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:49:42] 2025-10-13 06:49:34,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140633898534720)>', '<ExcThread(monitor, started 140633679587072)>']
[2025-10-13 02:49:42] 2025-10-13 06:49:39,061 | INFO     | all workflow threads have been joined
[2025-10-13 02:49:42] 2025-10-13 06:49:39,062 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:49:42] 2025-10-13 06:49:39,062 | INFO     | traces error code: 0
[2025-10-13 02:49:42] 2025-10-13 06:49:39,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:49:42] 2025-10-13 06:49:42,097 | INFO     | PID=28024 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 02:49:42] 2025-10-13 06:49:42,097 | INFO     | .. there are 2 such processes running
[2025-10-13 02:49:42] 2025-10-13 06:49:42,098 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:49:42] 2025-10-13 06:49:42,098 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:49:42] 2025-10-13 06:49:42,098 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:49:42] 2025-10-13 06:49:42,098 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:49:42] 2025-10-13 06:49:42,098 | INFO     | [monitor] control thread has ended
[2025-10-13 02:49:42] 2025-10-13 06:49:42,187 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:49:42] 2025-10-13 06:49:42,190 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:49:42] 2025-10-13 06:49:42,194 [wrapper] pilotpid: 28024
[2025-10-13 02:49:42] 2025-10-13 06:49:42,197 [wrapper] Pilot exit status: 0
[2025-10-13 02:49:42] 2025-10-13 06:49:42,207 [wrapper] pandaids: 6840850841
[2025-10-13 02:49:42] 2025-10-13 06:49:42,237 [wrapper] cleanup supervisor_pilot  9211 28025
[2025-10-13 02:49:42] 2025-10-13 06:49:42,241 [wrapper] Test setup, not cleaning
[2025-10-13 02:49:42] 2025-10-13 06:49:42,243 [wrapper] apfmon messages muted
[2025-10-13 02:49:42] 2025-10-13 06:49:42,246 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:49:42] 2025-10-13 06:49:42,248 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:49:42]  *** Error codes and diagnostics ***
[2025-10-13 02:49:42]     "exeErrorCode": 0,
[2025-10-13 02:49:42]     "exeErrorDiag": "",
[2025-10-13 02:49:42]     "pilotErrorCode": 0,
[2025-10-13 02:49:42]     "pilotErrorDiag": "",
[2025-10-13 02:49:42]  *** Listing of results directory ***
[2025-10-13 02:49:42] total 412060
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:09 queuedata.json
[2025-10-13 02:49:42] -rwx------ 1 boincer umatlas     36292 Oct 12 18:10 runpilot2-wrapper.sh
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas       100 Oct 13 01:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:49:42] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 01:53 run_atlas
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas       105 Oct 13 01:53 job.xml
[2025-10-13 02:49:42] -rw-r--r-- 2 boincer umatlas 219624224 Oct 13 01:53 EVNT.46676267._004334.pool.root.1
[2025-10-13 02:49:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:53 start_atlas.sh
[2025-10-13 02:49:42] drwxrwx--x 2 boincer umatlas      4096 Oct 13 01:53 shared
[2025-10-13 02:49:42] -rw-r--r-- 2 boincer umatlas    569676 Oct 13 01:53 input.tar.gz
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas         0 Oct 13 01:53 boinc_lockfile
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 01:53 pandaJob.out
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas    973230 Oct 13 01:53 agis_schedconf.cvmfs.json
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas   1560580 Oct 13 01:53 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:49:42] drwx------ 5 boincer umatlas      4096 Oct 13 01:53 pilot3
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas      6136 Oct 13 02:45 init_data.xml
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas 196784859 Oct 13 02:48 HITS.46676269._090789.pool.root.1
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas        95 Oct 13 02:48 pilot_heartbeat.json
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas       529 Oct 13 02:48 boinc_task_state.xml
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas      1047 Oct 13 02:48 memory_monitor_summary.json
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas    308720 Oct 13 02:49 log.46676269._090789.job.log.tgz.1
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas      7835 Oct 13 02:49 heartbeat.json
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas        27 Oct 13 02:49 wrapper_checkpoint.txt
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 02:49 boinc_mmap_file
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas       820 Oct 13 02:49 pilotlog.txt
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas    512540 Oct 13 02:49 log.46676269._090789.job.log.1
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas       357 Oct 13 02:49 output.list
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas       620 Oct 13 02:49 runtime_log
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas    839680 Oct 13 02:49 result.tar.gz
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas      8703 Oct 13 02:49 runtime_log.err
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas       655 Oct 13 02:49 N11KDmbRJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdolNDmLFoaRm.diag
[2025-10-13 02:49:42] -rw-r--r-- 1 boincer umatlas     21808 Oct 13 02:49 stderr.txt
[2025-10-13 02:49:42] HITS file was successfully produced:
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas 196784859 Oct 13 02:48 shared/HITS.pool.root.1
[2025-10-13 02:49:42]  *** Contents of shared directory: ***
[2025-10-13 02:49:42] total 408056
[2025-10-13 02:49:42] -rw-r--r-- 2 boincer umatlas 219624224 Oct 13 01:53 ATLAS.root_0
[2025-10-13 02:49:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:53 start_atlas.sh
[2025-10-13 02:49:42] -rw-r--r-- 2 boincer umatlas    569676 Oct 13 01:53 input.tar.gz
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas 196784859 Oct 13 02:48 HITS.pool.root.1
[2025-10-13 02:49:42] -rw------- 1 boincer umatlas    839680 Oct 13 02:49 result.tar.gz
02:49:44 (24350): run_atlas exited; CPU time 24003.296714
02:49:44 (24350): called boinc_finish(0)

</stderr_txt>
]]>

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