Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:05:08 (2146940): wrapper (7.7.26015): starting
17:05:08 (2146940): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 17:05:08] Arguments: --nthreads 2
[2025-10-13 17:05:08] Threads: 2
[2025-10-13 17:05:08] Checking for CVMFS
[2025-10-13 17:05:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:05:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:05:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:05:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:05:08] 2.9.2.0 779100 5976 61980 151664 3 57 19706276 36864001 0 130560 0 3618470 99.989 204485 825 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 17:05:08] CVMFS is ok
[2025-10-13 17:05:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:05:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:05:08] Further information can be found at the LHC@home message board.
[2025-10-13 17:05:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:05:08] Checking for apptainer binary...
[2025-10-13 17:05:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:05:08] Running /usr/bin/apptainer --version
[2025-10-13 17:05:08] apptainer version 1.4.1-1.1
[2025-10-13 17:05:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:05:08] atlasA229
[2025-10-13 17:05:08] apptainer works
[2025-10-13 17:05:08] Set ATHENA_PROC_NUMBER=2
[2025-10-13 17:05:08] Set ATHENA_CORE_NUMBER=2
[2025-10-13 17:05:08] Starting ATLAS job with PandaID=6841069348
[2025-10-13 17:05:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 19:11:45]  *** The last 200 lines of the pilot log: ***
[2025-10-13 19:11:45] 2025-10-13 17:11:13,518 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 19:11:45] 2025-10-13 17:11:13,518 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 19:11:45] 2025-10-13 17:11:13,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 19:11:45] 2025-10-13 17:11:13,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 19:11:45] 2025-10-13 17:11:13,519 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 19:11:45] 2025-10-13 17:11:13,519 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 19:11:45] 2025-10-13 17:11:13,519 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 19:11:45] 2025-10-13 17:11:13,519 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 19:11:45] 2025-10-13 17:11:13,519 | INFO     | job 6841069348 has completed (purged errors)
[2025-10-13 19:11:45] 2025-10-13 17:11:13,519 | INFO     | overall cleanup function is called
[2025-10-13 19:11:45] 2025-10-13 17:11:14,525 | INFO     | --- collectZombieJob: --- 10, [2157067]
[2025-10-13 19:11:45] 2025-10-13 17:11:14,525 | INFO     | zombie collector waiting for pid 2157067
[2025-10-13 19:11:45] 2025-10-13 17:11:14,526 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 19:11:45] 2025-10-13 17:11:14,526 | INFO     | collected zombie processes
[2025-10-13 19:11:45] 2025-10-13 17:11:14,526 | INFO     | will attempt to kill all subprocesses of pid=2157067
[2025-10-13 19:11:45] 2025-10-13 17:11:14,558 | INFO     | process IDs to be killed: [2157067] (in reverse order)
[2025-10-13 19:11:45] 2025-10-13 17:11:14,580 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 19:11:45] 2025-10-13 17:11:14,580 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 19:11:45] 2025-10-13 17:11:14,581 | INFO     | did not find any defunct processes belonging to 2157067
[2025-10-13 19:11:45] 2025-10-13 17:11:14,582 | INFO     | did not find any defunct processes belonging to 2157067
[2025-10-13 19:11:45] 2025-10-13 17:11:14,582 | INFO     | ready for new job
[2025-10-13 19:11:45] 2025-10-13 17:11:14,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 19:11:45] 2025-10-13 17:11:14,582 | INFO     | ***************************************
[2025-10-13 19:11:45] 2025-10-13 17:11:14,582 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 19:11:45] 2025-10-13 17:11:14,582 | INFO     | ***************************************
[2025-10-13 19:11:45] 2025-10-13 17:11:14,582 | INFO     | 
[2025-10-13 19:11:45] 2025-10-13 17:11:14,583 | INFO     | architecture information:
[2025-10-13 19:11:45] 2025-10-13 17:11:14,583 | INFO     | executing command: cat /etc/os-release
[2025-10-13 19:11:45] 2025-10-13 17:11:14,591 | INFO     | cat /etc/os-release:
[2025-10-13 19:11:45] NAME="CentOS Linux"
[2025-10-13 19:11:45] VERSION="7 (Core)"
[2025-10-13 19:11:45] ID="centos"
[2025-10-13 19:11:45] ID_LIKE="rhel fedora"
[2025-10-13 19:11:45] VERSION_ID="7"
[2025-10-13 19:11:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 19:11:45] ANSI_COLOR="0;31"
[2025-10-13 19:11:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 19:11:45] HOME_URL="https://www.centos.org/"
[2025-10-13 19:11:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 19:11:45] 
[2025-10-13 19:11:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 19:11:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 19:11:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 19:11:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 19:11:45] 
[2025-10-13 19:11:45] 2025-10-13 17:11:14,591 | INFO     | ***************************************
[2025-10-13 19:11:45] 2025-10-13 17:11:15,093 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 19:11:45] 2025-10-13 17:11:15,117 | INFO     | sufficient remaining disk space (341659615232 B)
[2025-10-13 19:11:45] 2025-10-13 17:11:15,118 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 19:11:45] 2025-10-13 17:11:15,118 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 19:11:45] 2025-10-13 17:11:15,118 | INFO     | update_server=False
[2025-10-13 19:11:45] 2025-10-13 17:11:15,119 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 19:11:45] 2025-10-13 17:11:15,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:11:45] 2025-10-13 17:11:15,179 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 19:11:45] 2025-10-13 17:11:15,507 | INFO     | all data control threads have been joined
[2025-10-13 19:11:45] 2025-10-13 17:11:16,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:11:45] 2025-10-13 17:11:16,004 | INFO     | aborting loop
[2025-10-13 19:11:45] 2025-10-13 17:11:16,125 | INFO     | [job] retrieve thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:16,125 | INFO     | [job] queue monitor thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:16,171 | INFO     | all job control threads have been joined
[2025-10-13 19:11:45] 2025-10-13 17:11:16,366 | INFO     | all payload control threads have been joined
[2025-10-13 19:11:45] 2025-10-13 17:11:16,428 | INFO     | [payload] validate_post thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:16,513 | INFO     | [data] control thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,010 | INFO     | [job] job monitor thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,177 | INFO     | [job] control thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,185 | INFO     | [data] copytool_out thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,245 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,286 | INFO     | [payload] failed_post thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,298 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,309 | INFO     | [job] validate thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,372 | INFO     | [payload] control thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,414 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,546 | INFO     | [data] copytool_in thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:17,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 19:11:45] 2025-10-13 17:11:21,714 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:25,934 | INFO     | job.realtimelogging is not enabled
[2025-10-13 19:11:45] 2025-10-13 17:11:26,940 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 19:11:45] 2025-10-13 17:11:31,807 | INFO     | [monitor] cgroup control has ended
[2025-10-13 19:11:45] 2025-10-13 17:11:32,890 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852467066688)>', '<ExcThread(monitor, started 139851517130496)>']
[2025-10-13 19:11:45] 2025-10-13 17:11:37,893 | INFO     | all workflow threads have been joined
[2025-10-13 19:11:45] 2025-10-13 17:11:37,893 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 19:11:45] 2025-10-13 17:11:37,894 | INFO     | traces error code: 0
[2025-10-13 19:11:45] 2025-10-13 17:11:37,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 19:11:45] 2025-10-13 17:11:45,269 | INFO     | PID=2150651 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 19:11:45] 2025-10-13 17:11:45,270 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 19:11:45] 2025-10-13 17:11:45,270 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 19:11:45] 2025-10-13 17:11:45,270 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 19:11:45] 2025-10-13 17:11:45,270 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 19:11:45] 2025-10-13 17:11:45,270 | INFO     | [monitor] control thread has ended
[2025-10-13 19:11:45] 2025-10-13 17:11:45,308 [wrapper] ==== pilot stdout END ====
[2025-10-13 19:11:45] 2025-10-13 17:11:45,311 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 19:11:45] 2025-10-13 17:11:45,313 [wrapper] pilotpid: 2150651
[2025-10-13 19:11:45] 2025-10-13 17:11:45,316 [wrapper] Pilot exit status: 0
[2025-10-13 19:11:45] 2025-10-13 17:11:45,321 [wrapper] pandaids: 6841069348
[2025-10-13 19:11:45] 2025-10-13 17:11:45,333 [wrapper] cleanup supervisor_pilot 2171779 2150652
[2025-10-13 19:11:45] 2025-10-13 17:11:45,336 [wrapper] Test setup, not cleaning
[2025-10-13 19:11:45] 2025-10-13 17:11:45,338 [wrapper] apfmon messages muted
[2025-10-13 19:11:45] 2025-10-13 17:11:45,340 [wrapper] ==== wrapper stdout END ====
[2025-10-13 19:11:45] 2025-10-13 17:11:45,342 [wrapper] ==== wrapper stderr END ====
[2025-10-13 19:11:45]  *** Error codes and diagnostics ***
[2025-10-13 19:11:45]     "exeErrorCode": 0,
[2025-10-13 19:11:45]     "exeErrorDiag": "",
[2025-10-13 19:11:45]     "pilotErrorCode": 0,
[2025-10-13 19:11:45]     "pilotErrorDiag": "",
[2025-10-13 19:11:45]  *** Listing of results directory ***
[2025-10-13 19:11:45] total 411020
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:48 pilot3.tar.gz
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:50 queuedata.json
[2025-10-13 19:11:45] -rwx------ 1 boinc boinc     36292 Oct 13 02:51 runpilot2-wrapper.sh
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 19:11:45] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:05 run_atlas
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:05 job.xml
[2025-10-13 19:11:45] -rw-r--r-- 2 boinc boinc 219863127 Oct 13 17:05 EVNT.46676267._004706.pool.root.1
[2025-10-13 19:11:45] -rw-r--r-- 2 boinc boinc    569680 Oct 13 17:05 input.tar.gz
[2025-10-13 19:11:45] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:05 start_atlas.sh
[2025-10-13 19:11:45] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:05 shared
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:05 boinc_setup_complete
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc      6206 Oct 13 17:05 init_data.xml
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:05 boinc_lockfile
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc      2549 Oct 13 17:05 pandaJob.out
[2025-10-13 19:11:45] -rw------- 1 boinc boinc    972791 Oct 13 17:05 agis_schedconf.cvmfs.json
[2025-10-13 19:11:45] -rw------- 1 boinc boinc   1560580 Oct 13 17:05 agis_ddmendpoints.agis.ALL.json
[2025-10-13 19:11:45] drwx------ 5 boinc boinc      4096 Oct 13 17:05 pilot3
[2025-10-13 19:11:45] -rw------- 1 boinc boinc 194428395 Oct 13 19:10 HITS.46676269._093480.pool.root.1
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc       529 Oct 13 19:10 boinc_task_state.xml
[2025-10-13 19:11:45] -rw------- 1 boinc boinc        95 Oct 13 19:10 pilot_heartbeat.json
[2025-10-13 19:11:45] -rw------- 1 boinc boinc      1027 Oct 13 19:11 memory_monitor_summary.json
[2025-10-13 19:11:45] -rw------- 1 boinc boinc    267116 Oct 13 19:11 log.46676269._093480.job.log.tgz.1
[2025-10-13 19:11:45] -rw------- 1 boinc boinc      7753 Oct 13 19:11 heartbeat.json
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc      8192 Oct 13 19:11 boinc_mmap_file
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc        27 Oct 13 19:11 wrapper_checkpoint.txt
[2025-10-13 19:11:45] -rw------- 1 boinc boinc       747 Oct 13 19:11 pilotlog.txt
[2025-10-13 19:11:45] -rw------- 1 boinc boinc   1088733 Oct 13 19:11 log.46676269._093480.job.log.1
[2025-10-13 19:11:45] -rw------- 1 boinc boinc       357 Oct 13 19:11 output.list
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc       620 Oct 13 19:11 runtime_log
[2025-10-13 19:11:45] -rw------- 1 boinc boinc   1372160 Oct 13 19:11 result.tar.gz
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc      8792 Oct 13 19:11 runtime_log.err
[2025-10-13 19:11:45] -rw------- 1 boinc boinc       662 Oct 13 19:11 BXOODmUxLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjFmNDmHjlLYn.diag
[2025-10-13 19:11:45] -rw-r--r-- 1 boinc boinc     11715 Oct 13 19:11 stderr.txt
[2025-10-13 19:11:45] HITS file was successfully produced:
[2025-10-13 19:11:45] -rw------- 1 boinc boinc 194428395 Oct 13 19:10 shared/HITS.pool.root.1
[2025-10-13 19:11:45]  *** Contents of shared directory: ***
[2025-10-13 19:11:45] total 406508
[2025-10-13 19:11:45] -rw-r--r-- 2 boinc boinc 219863127 Oct 13 17:05 ATLAS.root_0
[2025-10-13 19:11:45] -rw-r--r-- 2 boinc boinc    569680 Oct 13 17:05 input.tar.gz
[2025-10-13 19:11:45] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:05 start_atlas.sh
[2025-10-13 19:11:45] -rw------- 1 boinc boinc 194428395 Oct 13 19:10 HITS.pool.root.1
[2025-10-13 19:11:45] -rw------- 1 boinc boinc   1372160 Oct 13 19:11 result.tar.gz
19:11:46 (2146940): run_atlas exited; CPU time 14570.393433
19:11:46 (2146940): called boinc_finish(0)

</stderr_txt>
]]>

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