Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:36:02 (3583225): wrapper (7.7.26015): starting
17:36:02 (3583225): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 17:36:02] Arguments: --nthreads 3
[2025-10-13 17:36:02] Threads: 3
[2025-10-13 17:36:02] Checking for CVMFS
[2025-10-13 17:36:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:36:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:36:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:36:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:36:02] 2.9.2.0 1859496 5613 81280 151666 3 57 29858051 36864000 0 130560 0 4528869 99.991 198543 839 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 17:36:02] CVMFS is ok
[2025-10-13 17:36:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:36:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:36:02] Further information can be found at the LHC@home message board.
[2025-10-13 17:36:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:36:02] Checking for apptainer binary...
[2025-10-13 17:36:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:36:02] Running /usr/bin/apptainer --version
[2025-10-13 17:36:02] apptainer version 1.4.1-1.1
[2025-10-13 17:36:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:36:02] atlasA228b
[2025-10-13 17:36:02] apptainer works
[2025-10-13 17:36:02] Set ATHENA_PROC_NUMBER=3
[2025-10-13 17:36:02] Set ATHENA_CORE_NUMBER=3
[2025-10-13 17:36:02] Starting ATLAS job with PandaID=6840850917
[2025-10-13 17:36:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 19:00:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 19:00:29] 2025-10-13 16:59:59,435 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 19:00:29] 2025-10-13 16:59:59,435 | INFO     | collected zombie processes
[2025-10-13 19:00:29] 2025-10-13 16:59:59,435 | INFO     | will attempt to kill all subprocesses of pid=3593390
[2025-10-13 19:00:29] 2025-10-13 16:59:59,479 | INFO     | process IDs to be killed: [3593390] (in reverse order)
[2025-10-13 19:00:29] 2025-10-13 16:59:59,506 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 19:00:29] 2025-10-13 16:59:59,506 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 19:00:29] 2025-10-13 16:59:59,507 | INFO     | did not find any defunct processes belonging to 3593390
[2025-10-13 19:00:29] 2025-10-13 16:59:59,508 | INFO     | did not find any defunct processes belonging to 3593390
[2025-10-13 19:00:29] 2025-10-13 16:59:59,508 | INFO     | ready for new job
[2025-10-13 19:00:29] 2025-10-13 16:59:59,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 19:00:29] 2025-10-13 16:59:59,509 | INFO     | ***************************************
[2025-10-13 19:00:29] 2025-10-13 16:59:59,509 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 19:00:29] 2025-10-13 16:59:59,509 | INFO     | ***************************************
[2025-10-13 19:00:29] 2025-10-13 16:59:59,509 | INFO     | 
[2025-10-13 19:00:29] 2025-10-13 16:59:59,509 | INFO     | architecture information:
[2025-10-13 19:00:29] 2025-10-13 16:59:59,510 | INFO     | executing command: cat /etc/os-release
[2025-10-13 19:00:29] 2025-10-13 16:59:59,519 | INFO     | cat /etc/os-release:
[2025-10-13 19:00:29] NAME="CentOS Linux"
[2025-10-13 19:00:29] VERSION="7 (Core)"
[2025-10-13 19:00:29] ID="centos"
[2025-10-13 19:00:29] ID_LIKE="rhel fedora"
[2025-10-13 19:00:29] VERSION_ID="7"
[2025-10-13 19:00:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 19:00:29] ANSI_COLOR="0;31"
[2025-10-13 19:00:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 19:00:29] HOME_URL="https://www.centos.org/"
[2025-10-13 19:00:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 19:00:29] 
[2025-10-13 19:00:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 19:00:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 19:00:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 19:00:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 19:00:29] 
[2025-10-13 19:00:29] 2025-10-13 16:59:59,519 | INFO     | ***************************************
[2025-10-13 19:00:29] 2025-10-13 17:00:00,022 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 19:00:29] 2025-10-13 17:00:00,035 | INFO     | sufficient remaining disk space (275801702400 B)
[2025-10-13 19:00:29] 2025-10-13 17:00:00,036 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 19:00:29] 2025-10-13 17:00:00,036 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 19:00:29] 2025-10-13 17:00:00,036 | INFO     | update_server=False
[2025-10-13 19:00:29] 2025-10-13 17:00:00,036 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 19:00:29] 2025-10-13 17:00:00,036 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:00:29] 2025-10-13 17:00:00,036 | INFO     | aborting loop
[2025-10-13 19:00:29] 2025-10-13 17:00:00,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:00:29] 2025-10-13 17:00:00,243 | INFO     | all data control threads have been joined
[2025-10-13 19:00:29] 2025-10-13 17:00:00,346 | INFO     | all job control threads have been joined
[2025-10-13 19:00:29] 2025-10-13 17:00:00,795 | INFO     | all payload control threads have been joined
[2025-10-13 19:00:29] 2025-10-13 17:00:01,041 | INFO     | [job] job monitor thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:01,042 | INFO     | [job] retrieve thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:01,042 | INFO     | [job] queue monitor thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:01,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 19:00:29] 2025-10-13 17:00:01,195 | INFO     | [payload] validate_post thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:01,249 | INFO     | [data] control thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:01,352 | INFO     | [job] control thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:01,567 | INFO     | [payload] failed_post thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:01,801 | INFO     | [payload] control thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:01,890 | INFO     | [data] copytool_in thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:01,961 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:02,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 19:00:29] 2025-10-13 17:00:02,123 | INFO     | [job] validate thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:02,258 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:02,288 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:03,126 | INFO     | [data] copytool_out thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:06,130 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:10,978 | INFO     | job.realtimelogging is not enabled
[2025-10-13 19:00:29] 2025-10-13 17:00:11,983 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 19:00:29] 2025-10-13 17:00:14,619 | INFO     | [monitor] cgroup control has ended
[2025-10-13 19:00:29] 2025-10-13 17:00:16,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139815601198912)>', '<ExcThread(monitor, started 139815110555392)>']
[2025-10-13 19:00:29] 2025-10-13 17:00:21,102 | INFO     | all workflow threads have been joined
[2025-10-13 19:00:29] 2025-10-13 17:00:21,102 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 19:00:29] 2025-10-13 17:00:21,102 | INFO     | traces error code: 0
[2025-10-13 19:00:29] 2025-10-13 17:00:21,102 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 19:00:29] 2025-10-13 17:00:29,784 | INFO     | PID=3586940 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 19:00:29] 2025-10-13 17:00:29,785 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 19:00:29] 2025-10-13 17:00:29,785 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 19:00:29] 2025-10-13 17:00:29,785 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 19:00:29] 2025-10-13 17:00:29,785 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 19:00:29] 2025-10-13 17:00:29,785 | INFO     | [monitor] control thread has ended
[2025-10-13 19:00:29] 2025-10-13 17:00:29,832 [wrapper] ==== pilot stdout END ====
[2025-10-13 19:00:29] 2025-10-13 17:00:29,835 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 19:00:29] 2025-10-13 17:00:29,837 [wrapper] pilotpid: 3586940
[2025-10-13 19:00:29] 2025-10-13 17:00:29,840 [wrapper] Pilot exit status: 0
[2025-10-13 19:00:29] 2025-10-13 17:00:29,847 [wrapper] pandaids: 6840850917
[2025-10-13 19:00:29] 2025-10-13 17:00:29,865 [wrapper] cleanup supervisor_pilot 3605892 3586941
[2025-10-13 19:00:29] 2025-10-13 17:00:29,867 [wrapper] Test setup, not cleaning
[2025-10-13 19:00:29] 2025-10-13 17:00:29,870 [wrapper] apfmon messages muted
[2025-10-13 19:00:29] 2025-10-13 17:00:29,872 [wrapper] ==== wrapper stdout END ====
[2025-10-13 19:00:29] 2025-10-13 17:00:29,875 [wrapper] ==== wrapper stderr END ====
[2025-10-13 19:00:29]  *** Error codes and diagnostics ***
[2025-10-13 19:00:29]     "exeErrorCode": 0,
[2025-10-13 19:00:29]     "exeErrorDiag": "",
[2025-10-13 19:00:29]     "pilotErrorCode": 0,
[2025-10-13 19:00:29]     "pilotErrorDiag": "",
[2025-10-13 19:00:29]  *** Listing of results directory ***
[2025-10-13 19:00:29] total 416788
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc    557409 Oct 12 23:57 pilot3.tar.gz
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc      5112 Oct 13 00:18 queuedata.json
[2025-10-13 19:00:29] -rwx------ 1 boinc boinc     36292 Oct 13 00:19 runpilot2-wrapper.sh
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 19:00:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:36 run_atlas
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:36 job.xml
[2025-10-13 19:00:29] -rw-r--r-- 2 boinc boinc 220564249 Oct 13 17:36 EVNT.46676267._004606.pool.root.1
[2025-10-13 19:00:29] -rw-r--r-- 2 boinc boinc    569681 Oct 13 17:36 input.tar.gz
[2025-10-13 19:00:29] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:36 start_atlas.sh
[2025-10-13 19:00:29] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:36 shared
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:36 boinc_setup_complete
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc      6449 Oct 13 17:36 init_data.xml
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:36 boinc_lockfile
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc      2550 Oct 13 17:36 pandaJob.out
[2025-10-13 19:00:29] -rw------- 1 boinc boinc    972783 Oct 13 17:36 agis_schedconf.cvmfs.json
[2025-10-13 19:00:29] -rw------- 1 boinc boinc   1560580 Oct 13 17:36 agis_ddmendpoints.agis.ALL.json
[2025-10-13 19:00:29] drwx------ 5 boinc boinc      4096 Oct 13 17:36 pilot3
[2025-10-13 19:00:29] -rw------- 1 boinc boinc 200350977 Oct 13 18:59 HITS.46676269._090865.pool.root.1
[2025-10-13 19:00:29] -rw------- 1 boinc boinc        95 Oct 13 18:59 pilot_heartbeat.json
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc       529 Oct 13 18:59 boinc_task_state.xml
[2025-10-13 19:00:29] -rw------- 1 boinc boinc      1014 Oct 13 18:59 memory_monitor_summary.json
[2025-10-13 19:00:29] -rw------- 1 boinc boinc    254490 Oct 13 18:59 log.46676269._090865.job.log.tgz.1
[2025-10-13 19:00:29] -rw------- 1 boinc boinc      7757 Oct 13 18:59 heartbeat.json
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc        27 Oct 13 19:00 wrapper_checkpoint.txt
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc      8192 Oct 13 19:00 boinc_mmap_file
[2025-10-13 19:00:29] -rw------- 1 boinc boinc       747 Oct 13 19:00 pilotlog.txt
[2025-10-13 19:00:29] -rw------- 1 boinc boinc    737281 Oct 13 19:00 log.46676269._090865.job.log.1
[2025-10-13 19:00:29] -rw------- 1 boinc boinc       357 Oct 13 19:00 output.list
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc       620 Oct 13 19:00 runtime_log
[2025-10-13 19:00:29] -rw------- 1 boinc boinc   1013760 Oct 13 19:00 result.tar.gz
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc      8797 Oct 13 19:00 runtime_log.err
[2025-10-13 19:00:29] -rw------- 1 boinc boinc       662 Oct 13 19:00 KkiMDmYaJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjplNDmQR3OYo.diag
[2025-10-13 19:00:29] -rw-r--r-- 1 boinc boinc     10512 Oct 13 19:00 stderr.txt
[2025-10-13 19:00:29] HITS file was successfully produced:
[2025-10-13 19:00:29] -rw------- 1 boinc boinc 200350977 Oct 13 18:59 shared/HITS.pool.root.1
[2025-10-13 19:00:29]  *** Contents of shared directory: ***
[2025-10-13 19:00:29] total 412628
[2025-10-13 19:00:29] -rw-r--r-- 2 boinc boinc 220564249 Oct 13 17:36 ATLAS.root_0
[2025-10-13 19:00:29] -rw-r--r-- 2 boinc boinc    569681 Oct 13 17:36 input.tar.gz
[2025-10-13 19:00:29] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:36 start_atlas.sh
[2025-10-13 19:00:29] -rw------- 1 boinc boinc 200350977 Oct 13 18:59 HITS.pool.root.1
[2025-10-13 19:00:29] -rw------- 1 boinc boinc   1013760 Oct 13 19:00 result.tar.gz
19:00:31 (3583225): run_atlas exited; CPU time 14400.508398
19:00:31 (3583225): called boinc_finish(0)

</stderr_txt>
]]>

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