Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:30:13 (3694313): wrapper (7.7.26015): starting
17:30:13 (3694313): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 17:30:13] Arguments: --nthreads 3
[2025-10-13 17:30:13] Threads: 3
[2025-10-13 17:30:13] Checking for CVMFS
[2025-10-13 17:30:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:30:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:30:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:30:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:30:13] 2.9.2.0 1855376 5975 84368 151666 0 57 26059806 36864000 0 130560 0 4856507 99.991 204248 726 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 17:30:13] CVMFS is ok
[2025-10-13 17:30:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:30:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:30:13] Further information can be found at the LHC@home message board.
[2025-10-13 17:30:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:30:13] Checking for apptainer binary...
[2025-10-13 17:30:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:30:13] Running /usr/bin/apptainer --version
[2025-10-13 17:30:13] apptainer version 1.4.1-1.1
[2025-10-13 17:30:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:30:13] thA331b
[2025-10-13 17:30:13] apptainer works
[2025-10-13 17:30:13] Set ATHENA_PROC_NUMBER=3
[2025-10-13 17:30:13] Set ATHENA_CORE_NUMBER=3
[2025-10-13 17:30:13] Starting ATLAS job with PandaID=6841069658
[2025-10-13 17:30:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:51:31]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:51:31] 2025-10-13 16:50:49,293 | INFO     | job 6841069658 has completed (purged errors)
[2025-10-13 18:51:31] 2025-10-13 16:50:49,294 | INFO     | overall cleanup function is called
[2025-10-13 18:51:31] 2025-10-13 16:50:50,299 | INFO     | --- collectZombieJob: --- 10, [3704470]
[2025-10-13 18:51:31] 2025-10-13 16:50:50,299 | INFO     | zombie collector waiting for pid 3704470
[2025-10-13 18:51:31] 2025-10-13 16:50:50,299 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:51:31] 2025-10-13 16:50:50,299 | INFO     | collected zombie processes
[2025-10-13 18:51:31] 2025-10-13 16:50:50,299 | INFO     | will attempt to kill all subprocesses of pid=3704470
[2025-10-13 18:51:31] 2025-10-13 16:50:50,341 | INFO     | process IDs to be killed: [3704470] (in reverse order)
[2025-10-13 18:51:31] 2025-10-13 16:50:50,364 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:51:31] 2025-10-13 16:50:50,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:51:31] 2025-10-13 16:50:50,366 | INFO     | did not find any defunct processes belonging to 3704470
[2025-10-13 18:51:31] 2025-10-13 16:50:50,367 | INFO     | did not find any defunct processes belonging to 3704470
[2025-10-13 18:51:31] 2025-10-13 16:50:50,367 | INFO     | ready for new job
[2025-10-13 18:51:31] 2025-10-13 16:50:50,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:51:31] 2025-10-13 16:50:50,368 | INFO     | ***************************************
[2025-10-13 18:51:31] 2025-10-13 16:50:50,368 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:51:31] 2025-10-13 16:50:50,368 | INFO     | ***************************************
[2025-10-13 18:51:31] 2025-10-13 16:50:50,368 | INFO     | 
[2025-10-13 18:51:31] 2025-10-13 16:50:50,368 | INFO     | architecture information:
[2025-10-13 18:51:31] 2025-10-13 16:50:50,368 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:51:31] 2025-10-13 16:50:50,376 | INFO     | cat /etc/os-release:
[2025-10-13 18:51:31] NAME="CentOS Linux"
[2025-10-13 18:51:31] VERSION="7 (Core)"
[2025-10-13 18:51:31] ID="centos"
[2025-10-13 18:51:31] ID_LIKE="rhel fedora"
[2025-10-13 18:51:31] VERSION_ID="7"
[2025-10-13 18:51:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:51:31] ANSI_COLOR="0;31"
[2025-10-13 18:51:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:51:31] HOME_URL="https://www.centos.org/"
[2025-10-13 18:51:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:51:31] 
[2025-10-13 18:51:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:51:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:51:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:51:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:51:31] 
[2025-10-13 18:51:31] 2025-10-13 16:50:50,377 | INFO     | ***************************************
[2025-10-13 18:51:31] 2025-10-13 16:50:50,880 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 18:51:31] 2025-10-13 16:50:50,892 | INFO     | sufficient remaining disk space (234626220032 B)
[2025-10-13 18:51:31] 2025-10-13 16:50:50,893 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:51:31] 2025-10-13 16:50:50,893 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:51:31] 2025-10-13 16:50:50,893 | INFO     | update_server=False
[2025-10-13 18:51:31] 2025-10-13 16:50:50,893 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:51:31] 2025-10-13 16:50:50,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:51:31] 2025-10-13 16:50:50,893 | INFO     | aborting loop
[2025-10-13 18:51:31] 2025-10-13 16:50:50,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:51:31] 2025-10-13 16:50:50,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:51:31] 2025-10-13 16:50:50,927 | INFO     | all payload control threads have been joined
[2025-10-13 18:51:31] 2025-10-13 16:50:51,183 | INFO     | all job control threads have been joined
[2025-10-13 18:51:31] 2025-10-13 16:50:51,898 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:51,899 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:51,899 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:51,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:51:31] 2025-10-13 16:50:51,932 | INFO     | [payload] control thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:51,990 | INFO     | all data control threads have been joined
[2025-10-13 18:51:31] 2025-10-13 16:50:52,009 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:52,186 | INFO     | [job] control thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:52,378 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:52,519 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:52,707 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:52,996 | INFO     | [data] control thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:53,013 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:53,013 | INFO     | [job] validate thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:53,023 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:53,909 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:50:54,900 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:51:01,298 | INFO     | job.realtimelogging is not enabled
[2025-10-13 18:51:31] 2025-10-13 16:51:02,303 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:51:31] 2025-10-13 16:51:20,901 | INFO     | PID=3698038 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:51:31] 2025-10-13 16:51:20,901 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:51:31] 2025-10-13 16:51:20,901 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:51:31] 2025-10-13 16:51:20,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:51:31] 2025-10-13 16:51:24,874 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:51:31] 2025-10-13 16:51:25,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139909736077120)>', '<ExcThread(monitor, started 139909021034240)>']
[2025-10-13 18:51:31] 2025-10-13 16:51:25,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:51:31] 2025-10-13 16:51:25,928 | INFO     | [monitor] control thread has ended
[2025-10-13 18:51:31] 2025-10-13 16:51:30,882 | INFO     | all workflow threads have been joined
[2025-10-13 18:51:31] 2025-10-13 16:51:30,882 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:51:31] 2025-10-13 16:51:30,883 | INFO     | traces error code: 0
[2025-10-13 18:51:31] 2025-10-13 16:51:30,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:51:31] 2025-10-13 16:51:30,934 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:51:31] 2025-10-13 16:51:30,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:51:31] 2025-10-13 16:51:30,939 [wrapper] pilotpid: 3698038
[2025-10-13 18:51:31] 2025-10-13 16:51:30,941 [wrapper] Pilot exit status: 0
[2025-10-13 18:51:31] 2025-10-13 16:51:30,948 [wrapper] pandaids: 6841069658
[2025-10-13 18:51:31] 2025-10-13 16:51:30,963 [wrapper] cleanup supervisor_pilot 3716371 3698039
[2025-10-13 18:51:31] 2025-10-13 16:51:30,966 [wrapper] Test setup, not cleaning
[2025-10-13 18:51:31] 2025-10-13 16:51:30,968 [wrapper] apfmon messages muted
[2025-10-13 18:51:31] 2025-10-13 16:51:30,970 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:51:31] 2025-10-13 16:51:30,972 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:51:31]  *** Error codes and diagnostics ***
[2025-10-13 18:51:31]     "exeErrorCode": 0,
[2025-10-13 18:51:31]     "exeErrorDiag": "",
[2025-10-13 18:51:31]     "pilotErrorCode": 0,
[2025-10-13 18:51:31]     "pilotErrorDiag": "",
[2025-10-13 18:51:31]  *** Listing of results directory ***
[2025-10-13 18:51:31] total 414528
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:48 pilot3.tar.gz
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:56 queuedata.json
[2025-10-13 18:51:31] -rwx------ 1 boinc boinc     36292 Oct 13 02:56 runpilot2-wrapper.sh
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:51:31] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:30 run_atlas
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:30 job.xml
[2025-10-13 18:51:31] -rw-r--r-- 2 boinc boinc 221887981 Oct 13 17:30 EVNT.46676267._004714.pool.root.1
[2025-10-13 18:51:31] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:30 shared
[2025-10-13 18:51:31] -rw-r--r-- 2 boinc boinc    569679 Oct 13 17:30 input.tar.gz
[2025-10-13 18:51:31] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:30 start_atlas.sh
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:30 boinc_setup_complete
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc      6441 Oct 13 17:30 init_data.xml
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:30 boinc_lockfile
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc      2550 Oct 13 17:30 pandaJob.out
[2025-10-13 18:51:31] -rw------- 1 boinc boinc    972783 Oct 13 17:30 agis_schedconf.cvmfs.json
[2025-10-13 18:51:31] -rw------- 1 boinc boinc   1560580 Oct 13 17:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:51:31] drwx------ 5 boinc boinc      4096 Oct 13 17:30 pilot3
[2025-10-13 18:51:31] -rw------- 1 boinc boinc 196747233 Oct 13 18:50 HITS.46676269._093698.pool.root.1
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc       529 Oct 13 18:50 boinc_task_state.xml
[2025-10-13 18:51:31] -rw------- 1 boinc boinc      1017 Oct 13 18:50 memory_monitor_summary.json
[2025-10-13 18:51:31] -rw------- 1 boinc boinc    264445 Oct 13 18:50 log.46676269._093698.job.log.tgz.1
[2025-10-13 18:51:31] -rw------- 1 boinc boinc        95 Oct 13 18:50 pilot_heartbeat.json
[2025-10-13 18:51:31] -rw------- 1 boinc boinc      7765 Oct 13 18:50 heartbeat.json
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc        27 Oct 13 18:51 wrapper_checkpoint.txt
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc      8192 Oct 13 18:51 boinc_mmap_file
[2025-10-13 18:51:31] -rw------- 1 boinc boinc      4824 Oct 13 18:51 pilotlog.txt
[2025-10-13 18:51:31] -rw------- 1 boinc boinc    711168 Oct 13 18:51 log.46676269._093698.job.log.1
[2025-10-13 18:51:31] -rw------- 1 boinc boinc       357 Oct 13 18:51 output.list
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc       620 Oct 13 18:51 runtime_log
[2025-10-13 18:51:31] -rw------- 1 boinc boinc    993280 Oct 13 18:51 result.tar.gz
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc      8782 Oct 13 18:51 runtime_log.err
[2025-10-13 18:51:31] -rw------- 1 boinc boinc       659 Oct 13 18:51 CT4LDmm2LS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcHmNDmU0erLo.diag
[2025-10-13 18:51:31] -rw-r--r-- 1 boinc boinc     12642 Oct 13 18:51 stderr.txt
[2025-10-13 18:51:31] HITS file was successfully produced:
[2025-10-13 18:51:31] -rw------- 1 boinc boinc 196747233 Oct 13 18:50 shared/HITS.pool.root.1
[2025-10-13 18:51:31]  *** Contents of shared directory: ***
[2025-10-13 18:51:31] total 410380
[2025-10-13 18:51:31] -rw-r--r-- 2 boinc boinc 221887981 Oct 13 17:30 ATLAS.root_0
[2025-10-13 18:51:31] -rw-r--r-- 2 boinc boinc    569679 Oct 13 17:30 input.tar.gz
[2025-10-13 18:51:31] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:30 start_atlas.sh
[2025-10-13 18:51:31] -rw------- 1 boinc boinc 196747233 Oct 13 18:50 HITS.pool.root.1
[2025-10-13 18:51:31] -rw------- 1 boinc boinc    993280 Oct 13 18:51 result.tar.gz
18:51:32 (3694313): run_atlas exited; CPU time 13804.790420
18:51:32 (3694313): called boinc_finish(0)

</stderr_txt>
]]>

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