Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:38:25 (6217): wrapper (7.7.26015): starting
19:38:25 (6217): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 19:38:25] Arguments: --nthreads 8
[2025-10-13 19:38:25] Threads: 8
[2025-10-13 19:38:25] Checking for CVMFS
[2025-10-13 19:38:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 19:38:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 19:38:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 19:38:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 19:38:28] 2.11.2.0 8429 20214 96020 151668 2 60 23611166 25165824 4632 130560 2 7777149 99.967 2061389 1530 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 19:38:28] CVMFS is ok
[2025-10-13 19:38:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:38:28] Checking for apptainer binary...
[2025-10-13 19:38:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 19:38:28] Running /usr/bin/apptainer --version
[2025-10-13 19:38:28] apptainer version 1.3.2-1.el7
[2025-10-13 19:38:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:38:42] cg-vwn467.simple-grid.lan
[2025-10-13 19:38:42] apptainer works
[2025-10-13 19:38:42] Set ATHENA_PROC_NUMBER=8
[2025-10-13 19:38:42] Set ATHENA_CORE_NUMBER=8
[2025-10-13 19:38:42] Starting ATLAS job with PandaID=6840851947
[2025-10-13 19:38:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 23:38:40]  *** The last 200 lines of the pilot log: ***
[2025-10-13 23:38:40] 2025-10-13 21:37:50,214 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 23:38:40] 2025-10-13 21:37:50,215 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,217 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6840851947/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 23:38:40] 2025-10-13 21:37:50,217 | INFO     | extracted standard info from prmon json
[2025-10-13 23:38:40] 2025-10-13 21:37:50,218 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 23:38:40] 2025-10-13 21:37:50,218 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 23:38:40] 2025-10-13 21:37:50,218 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 23:38:40] 2025-10-13 21:37:50,218 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 23:38:40] 2025-10-13 21:37:50,222 | INFO     | fitting pss+swap vs Time
[2025-10-13 23:38:40] 2025-10-13 21:37:50,223 | INFO     | sum of square deviations: 3438620752.0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,224 | INFO     | sum of deviations: 39671929256.0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,224 | INFO     | mean x: 1760384563.0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,225 | INFO     | mean y: 2477141.1569506726
[2025-10-13 23:38:40] 2025-10-13 21:37:50,225 | INFO     | -- intersect: -20307367091.03143
[2025-10-13 23:38:40] 2025-10-13 21:37:50,225 | INFO     | intersect: -20307367091.03143
[2025-10-13 23:38:40] 2025-10-13 21:37:50,225 | INFO     | chi2: 2.6027967001413415
[2025-10-13 23:38:40] 2025-10-13 21:37:50,226 | INFO     | sum of square deviations: 3212467674.5
[2025-10-13 23:38:40] 2025-10-13 21:37:50,227 | INFO     | sum of deviations: 38632148540.49999
[2025-10-13 23:38:40] 2025-10-13 21:37:50,227 | INFO     | mean x: 1760384410.5
[2025-10-13 23:38:40] 2025-10-13 21:37:50,227 | INFO     | mean y: 2476440.0321100918
[2025-10-13 23:38:40] 2025-10-13 21:37:50,227 | INFO     | -- intersect: -21167365228.616413
[2025-10-13 23:38:40] 2025-10-13 21:37:50,228 | INFO     | intersect: -21167365228.616413
[2025-10-13 23:38:40] 2025-10-13 21:37:50,228 | INFO     | chi2: 2.6052878892105773
[2025-10-13 23:38:40] 2025-10-13 21:37:50,228 | INFO     | current chi2=2.6052878892105773 (change=-0.09571201120320166 %)
[2025-10-13 23:38:40] 2025-10-13 21:37:50,228 | INFO     | right removable region: 217
[2025-10-13 23:38:40] 2025-10-13 21:37:50,228 | INFO     | sum of square deviations: 3212467674.5
[2025-10-13 23:38:40] 2025-10-13 21:37:50,230 | INFO     | sum of deviations: -9502613519.499998
[2025-10-13 23:38:40] 2025-10-13 21:37:50,230 | INFO     | mean x: 1760384715.5
[2025-10-13 23:38:40] 2025-10-13 21:37:50,230 | INFO     | mean y: 2510048.0688073393
[2025-10-13 23:38:40] 2025-10-13 21:37:50,230 | INFO     | -- intersect: 5209801542.335782
[2025-10-13 23:38:40] 2025-10-13 21:37:50,230 | INFO     | intersect: 5209801542.335782
[2025-10-13 23:38:40] 2025-10-13 21:37:50,231 | INFO     | chi2: 0.10447145505435954
[2025-10-13 23:38:40] 2025-10-13 21:37:50,231 | INFO     | current chi2=0.10447145505435954 (change=95.98618458949612 %)
[2025-10-13 23:38:40] 2025-10-13 21:37:50,231 | INFO     | sum of square deviations: 2996454322.0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,233 | INFO     | sum of deviations: -7113375188.000001
[2025-10-13 23:38:40] 2025-10-13 21:37:50,233 | INFO     | mean x: 1760384868.0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,233 | INFO     | mean y: 2508322.9765258217
[2025-10-13 23:38:40] 2025-10-13 21:37:50,233 | INFO     | -- intersect: 4181540170.524862
[2025-10-13 23:38:40] 2025-10-13 21:37:50,233 | INFO     | intersect: 4181540170.524862
[2025-10-13 23:38:40] 2025-10-13 21:37:50,233 | INFO     | chi2: 0.08718380970873071
[2025-10-13 23:38:40] 2025-10-13 21:37:50,234 | INFO     | current chi2=0.08718380970873071 (change=16.547721419820903 %)
[2025-10-13 23:38:40] 2025-10-13 21:37:50,234 | INFO     | left removable region: 20
[2025-10-13 23:38:40] 2025-10-13 21:37:50,234 | INFO     | sum of square deviations: 2370641658.0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,235 | INFO     | sum of deviations: 6375494727.000001
[2025-10-13 23:38:40] 2025-10-13 21:37:50,236 | INFO     | mean x: 1760384990.0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,236 | INFO     | mean y: 2497568.07106599
[2025-10-13 23:38:40] 2025-10-13 21:37:50,236 | INFO     | -- intersect: -4731800921.6903715
[2025-10-13 23:38:40] 2025-10-13 21:37:50,236 | INFO     | intersect: -4731800921.6903715
[2025-10-13 23:38:40] 2025-10-13 21:37:50,236 | INFO     | chi2: 0.0007887639219834894
[2025-10-13 23:38:40] 2025-10-13 21:37:50,236 | INFO     | -- intersect: -4731800921.6903715
[2025-10-13 23:38:40] 2025-10-13 21:37:50,236 | INFO     | current memory leak: 2.69 B/s (using 197 data points, chi2=0.00)
[2025-10-13 23:38:40] 2025-10-13 21:37:50,237 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2025-10-13 23:38:40] 2025-10-13 21:37:50,237 | INFO     | ..............................
[2025-10-13 23:38:40] 2025-10-13 21:37:50,237 | INFO     | . Timing measurements:
[2025-10-13 23:38:40] 2025-10-13 21:37:50,237 | INFO     | . get job = 0 s
[2025-10-13 23:38:40] 2025-10-13 21:37:50,237 | INFO     | . initial setup = 9 s
[2025-10-13 23:38:40] 2025-10-13 21:37:50,237 | INFO     | . payload setup = 120 s
[2025-10-13 23:38:40] 2025-10-13 21:37:50,237 | INFO     | . stage-in = 0 s
[2025-10-13 23:38:40] 2025-10-13 21:37:50,238 | INFO     | . payload execution = 13744 s
[2025-10-13 23:38:40] 2025-10-13 21:37:50,238 | INFO     | . stage-out = 3 s
[2025-10-13 23:38:40] 2025-10-13 21:37:50,238 | INFO     | . log creation = 1 s
[2025-10-13 23:38:40] 2025-10-13 21:37:50,238 | INFO     | ..............................
[2025-10-13 23:38:40] 2025-10-13 21:37:50,340 | INFO     | 
[2025-10-13 23:38:40] 2025-10-13 21:37:50,340 | INFO     | job summary report
[2025-10-13 23:38:40] 2025-10-13 21:37:50,340 | INFO     | --------------------------------------------------
[2025-10-13 23:38:40] 2025-10-13 21:37:50,340 | INFO     | PanDA job id: 6840851947
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | task id: 46676269
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | errors: (none)
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | pilot state: finished 
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | transexitcode: 0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | exeerrorcode: 0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | exeerrordiag: 
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | exitcode: 0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | exitmsg: OK
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | cpuconsumptiontime: 51522 s
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | nevents: 400
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | neventsw: 0
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | pid: 16618
[2025-10-13 23:38:40] 2025-10-13 21:37:50,341 | INFO     | pgrp: 16618
[2025-10-13 23:38:40] 2025-10-13 21:37:50,342 | INFO     | corecount: 8
[2025-10-13 23:38:40] 2025-10-13 21:37:50,342 | INFO     | event service: False
[2025-10-13 23:38:40] 2025-10-13 21:37:50,342 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 33: 2348941, 44: 2348997, 55: 2349153, 66: 2349181, 76: 2349209, 87: 2349265, 95: 2349555, 98: 2349863, 1
[2025-10-13 23:38:40] 2025-10-13 21:37:50,342 | INFO     | --------------------------------------------------
[2025-10-13 23:38:40] 2025-10-13 21:37:50,342 | INFO     | 
[2025-10-13 23:38:40] 2025-10-13 21:37:50,342 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-10-13 23:38:40] 2025-10-13 21:37:50,763 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,763 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,763 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,763 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,763 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,763 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,763 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,763 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,764 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 23:38:40] 2025-10-13 21:37:50,765 | INFO     | job 6840851947 has completed (purged errors)
[2025-10-13 23:38:40] 2025-10-13 21:37:50,765 | INFO     | overall cleanup function is called
[2025-10-13 23:38:40] 2025-10-13 21:37:51,774 | INFO     | --- collectZombieJob: --- 10, [16618]
[2025-10-13 23:38:40] 2025-10-13 21:37:51,774 | INFO     | zombie collector waiting for pid 16618
[2025-10-13 23:38:40] 2025-10-13 21:37:51,774 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 23:38:40] 2025-10-13 21:37:51,775 | INFO     | collected zombie processes
[2025-10-13 23:38:40] 2025-10-13 21:37:51,775 | INFO     | will attempt to kill all subprocesses of pid=16618
[2025-10-13 23:38:40] 2025-10-13 21:37:51,875 | INFO     | process IDs to be killed: [16618] (in reverse order)
[2025-10-13 23:38:40] 2025-10-13 21:37:52,756 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 23:38:40] 2025-10-13 21:37:52,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 23:38:40] 2025-10-13 21:37:52,759 | INFO     | did not find any defunct processes belonging to 16618
[2025-10-13 23:38:40] 2025-10-13 21:37:52,761 | INFO     | did not find any defunct processes belonging to 16618
[2025-10-13 23:38:40] 2025-10-13 21:37:52,762 | INFO     | ready for new job
[2025-10-13 23:38:40] 2025-10-13 21:37:52,762 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 23:38:40] 2025-10-13 21:37:52,764 | INFO     | ***************************************
[2025-10-13 23:38:40] 2025-10-13 21:37:52,764 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 23:38:40] 2025-10-13 21:37:52,764 | INFO     | ***************************************
[2025-10-13 23:38:40] 2025-10-13 21:37:52,764 | INFO     | 
[2025-10-13 23:38:40] 2025-10-13 21:37:52,765 | INFO     | pilot is running in a VM
[2025-10-13 23:38:40] 2025-10-13 21:37:52,765 | INFO     | architecture information:
[2025-10-13 23:38:40] 2025-10-13 21:37:52,777 | INFO     | executing command: cat /etc/os-release
[2025-10-13 23:38:40] 2025-10-13 21:37:53,007 | INFO     | cat /etc/os-release:
[2025-10-13 23:38:40] NAME="CentOS Linux"
[2025-10-13 23:38:40] VERSION="7 (Core)"
[2025-10-13 23:38:40] ID="centos"
[2025-10-13 23:38:40] ID_LIKE="rhel fedora"
[2025-10-13 23:38:40] VERSION_ID="7"
[2025-10-13 23:38:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 23:38:40] ANSI_COLOR="0;31"
[2025-10-13 23:38:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 23:38:40] HOME_URL="https://www.centos.org/"
[2025-10-13 23:38:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 23:38:40] 
[2025-10-13 23:38:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 23:38:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 23:38:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 23:38:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 23:38:40] 
[2025-10-13 23:38:40] 2025-10-13 21:37:53,008 | INFO     | ***************************************
[2025-10-13 23:38:40] 2025-10-13 21:37:53,511 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-10-13 23:38:40] 2025-10-13 21:37:53,688 | INFO     | sufficient remaining disk space (496173580288 B)
[2025-10-13 23:38:40] 2025-10-13 21:37:53,688 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 23:38:40] 2025-10-13 21:37:53,688 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 23:38:40] 2025-10-13 21:37:53,688 | INFO     | update_server=False
[2025-10-13 23:38:40] 2025-10-13 21:37:53,688 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 23:38:40] 2025-10-13 21:37:54,042 | INFO     | all data control threads have been joined
[2025-10-13 23:38:40] 2025-10-13 21:37:54,125 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 23:38:40] 2025-10-13 21:37:54,125 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 23:38:40] 2025-10-13 21:37:54,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:38:40] 2025-10-13 21:37:54,126 | INFO     | will abort loop
[2025-10-13 23:38:40] 2025-10-13 21:37:54,511 | INFO     | all job control threads have been joined
[2025-10-13 23:38:40] 2025-10-13 21:37:54,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 23:38:40] 2025-10-13 21:37:54,694 | INFO     | [job] retrieve thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:54,722 | INFO     | [payload] failed_post thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:54,780 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:54,885 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:54,887 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:55,048 | INFO     | [data] control thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:55,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 23:38:40] 2025-10-13 21:37:55,131 | INFO     | [job] job monitor thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:55,147 | INFO     | [job] validate thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:55,153 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:55,169 | INFO     | all payload control threads have been joined
[2025-10-13 23:38:40] 2025-10-13 21:37:55,357 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:38:40] 2025-10-13 21:37:55,517 | INFO     | [job] control thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:55,604 | INFO     | [data] copytool_in thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:56,089 | INFO     | [payload] validate_post thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:56,175 | INFO     | [payload] control thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:56,363 | INFO     | [job] queue monitor thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:57,062 | INFO     | [data] copytool_out thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:37:58,640 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 23:38:40] 2025-10-13 21:38:22,322 | INFO     | PID=10054 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 23:38:40] 2025-10-13 21:38:22,322 | INFO     | .. there are 9 such processes running
[2025-10-13 23:38:40] 2025-10-13 21:38:22,322 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 23:38:40] 2025-10-13 21:38:22,323 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 23:38:40] 2025-10-13 21:38:22,323 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 23:38:40] 2025-10-13 21:38:30,361 | INFO     | [monitor] cgroup control has ended
[2025-10-13 23:38:40] 2025-10-13 21:38:31,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139651848849216)>', '<ExcThread(monitor, started 139651171993344)>']
[2025-10-13 23:38:40] 2025-10-13 21:38:31,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 23:38:40] 2025-10-13 21:38:31,376 | INFO     | [monitor] control thread has ended
[2025-10-13 23:38:40] 2025-10-13 21:38:36,050 | INFO     | all workflow threads have been joined
[2025-10-13 23:38:40] 2025-10-13 21:38:36,050 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 23:38:40] 2025-10-13 21:38:36,051 | INFO     | traces error code: 0
[2025-10-13 23:38:40] 2025-10-13 21:38:36,051 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 23:38:40] 2025-10-13 21:38:36,416 [wrapper] ==== pilot stdout END ====
[2025-10-13 23:38:40] 2025-10-13 21:38:36,487 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 23:38:40] 2025-10-13 21:38:36,573 [wrapper] pilotpid: 10054
[2025-10-13 23:38:40] 2025-10-13 21:38:36,675 [wrapper] Pilot exit status: 0
[2025-10-13 23:38:40] 2025-10-13 21:38:37,202 [wrapper] pandaids: 6840851947
[2025-10-13 23:38:40] 2025-10-13 21:38:37,768 [wrapper] cleanup supervisor_pilot 27691 10055
[2025-10-13 23:38:40] 2025-10-13 21:38:37,863 [wrapper] Test setup, not cleaning
[2025-10-13 23:38:40] 2025-10-13 21:38:37,920 [wrapper] apfmon messages muted
[2025-10-13 23:38:40] 2025-10-13 21:38:38,009 [wrapper] ==== wrapper stdout END ====
[2025-10-13 23:38:40] 2025-10-13 21:38:38,072 [wrapper] ==== wrapper stderr END ====
[2025-10-13 23:38:40]  *** Error codes and diagnostics ***
[2025-10-13 23:38:40]     "exeErrorCode": 0,
[2025-10-13 23:38:40]     "exeErrorDiag": "",
[2025-10-13 23:38:40]     "pilotErrorCode": 0,
[2025-10-13 23:38:40]     "pilotErrorDiag": "",
[2025-10-13 23:38:40]  *** Listing of results directory ***
[2025-10-13 23:38:40] total 420456
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc    557409 Oct 12 23:57 pilot3.tar.gz
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc      5112 Oct 13 00:28 queuedata.json
[2025-10-13 23:38:40] -rwx------. 1 boinc boinc     36292 Oct 13 00:29 runpilot2-wrapper.sh
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc       100 Oct 13 19:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 23:38:40] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 19:38 run_atlas
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc       105 Oct 13 19:38 job.xml
[2025-10-13 23:38:40] -rw-r--r--. 2 boinc boinc 221605548 Oct 13 19:38 EVNT.46676267._004616.pool.root.1
[2025-10-13 23:38:40] drwxrwx--x. 2 boinc boinc        68 Oct 13 19:38 shared
[2025-10-13 23:38:40] -rw-r--r--. 2 boinc boinc    569683 Oct 13 19:38 input.tar.gz
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc      6390 Oct 13 19:38 init_data.xml
[2025-10-13 23:38:40] -rw-r--r--. 2 boinc boinc     15120 Oct 13 19:38 start_atlas.sh
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc         0 Oct 13 19:38 boinc_lockfile
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc      2550 Oct 13 19:38 pandaJob.out
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc    972791 Oct 13 19:41 agis_schedconf.cvmfs.json
[2025-10-13 23:38:40] drwx------. 5 boinc boinc      4096 Oct 13 19:42 pilot3
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc       531 Oct 13 23:35 boinc_task_state.xml
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc 200347205 Oct 13 23:35 HITS.46676269._091126.pool.root.1
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc      1017 Oct 13 23:36 memory_monitor_summary.json
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc   1560580 Oct 13 23:36 agis_ddmendpoints.agis.ALL.json
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc    466275 Oct 13 23:36 log.46676269._091126.job.log.tgz.1
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc        95 Oct 13 23:37 pilot_heartbeat.json
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc      7778 Oct 13 23:37 heartbeat.json
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc        28 Oct 13 23:38 wrapper_checkpoint.txt
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc      8192 Oct 13 23:38 boinc_mmap_file
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc      5070 Oct 13 23:38 pilotlog.txt
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc   1890962 Oct 13 23:38 log.46676269._091126.job.log.1
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc       357 Oct 13 23:38 output.list
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc       620 Oct 13 23:38 runtime_log
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc   2375680 Oct 13 23:38 result.tar.gz
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc      8703 Oct 13 23:38 runtime_log.err
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc       656 Oct 13 23:38 JhqNDmfkJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIslNDmyeTWhn.diag
[2025-10-13 23:38:40] -rw-r--r--. 1 boinc boinc     20790 Oct 13 23:38 stderr.txt
[2025-10-13 23:38:40] HITS file was successfully produced:
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc 200347205 Oct 13 23:35 shared/HITS.pool.root.1
[2025-10-13 23:38:40]  *** Contents of shared directory: ***
[2025-10-13 23:38:40] total 414960
[2025-10-13 23:38:40] -rw-r--r--. 2 boinc boinc 221605548 Oct 13 19:38 ATLAS.root_0
[2025-10-13 23:38:40] -rw-r--r--. 2 boinc boinc    569683 Oct 13 19:38 input.tar.gz
[2025-10-13 23:38:40] -rw-r--r--. 2 boinc boinc     15120 Oct 13 19:38 start_atlas.sh
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc 200347205 Oct 13 23:35 HITS.pool.root.1
[2025-10-13 23:38:40] -rw-------. 1 boinc boinc   2375680 Oct 13 23:38 result.tar.gz
23:38:41 (6217): run_atlas exited; CPU time 51687.927160
23:38:41 (6217): called boinc_finish(0)

</stderr_txt>
]]>

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