Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:58:16 (3963689): wrapper (7.7.26015): starting
18:58:16 (3963689): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 18:58:16] Arguments: --nthreads 3
[2025-10-13 18:58:16] Threads: 3
[2025-10-13 18:58:16] Checking for CVMFS
[2025-10-13 18:58:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 18:58:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 18:58:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 18:58:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 18:58:17] 2.9.2.0 2117043 6115 84532 151667 0 57 33847073 36864000 0 130560 0 4858487 99.991 212102 808 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 18:58:17] CVMFS is ok
[2025-10-13 18:58:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 18:58:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 18:58:17] Further information can be found at the LHC@home message board.
[2025-10-13 18:58:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 18:58:17] Checking for apptainer binary...
[2025-10-13 18:58:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 18:58:17] Running /usr/bin/apptainer --version
[2025-10-13 18:58:17] apptainer version 1.4.1-1.1
[2025-10-13 18:58:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 18:58:17] cosA127b
[2025-10-13 18:58:17] apptainer works
[2025-10-13 18:58:17] Set ATHENA_PROC_NUMBER=3
[2025-10-13 18:58:17] Set ATHENA_CORE_NUMBER=3
[2025-10-13 18:58:17] Starting ATLAS job with PandaID=6841069365
[2025-10-13 18:58:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 20:18:34]  *** The last 200 lines of the pilot log: ***
[2025-10-13 20:18:34]  storage_token=
[2025-10-13 20:18:34]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6841069365/log.46676269._093497.job.log.tgz.1
[2025-10-13 20:18:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8a/b8/log.46676269._093497.job.log.tgz.1
[2025-10-13 20:18:34]  workdir=None
[2025-10-13 20:18:34] ]
[2025-10-13 20:18:34] 2025-10-13 18:17:27,155 | INFO     | transferring file log.46676269._093497.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6841069365/log.46676269._093497.job.log.tgz.1 to /local/data/boinc/
[2025-10-13 20:18:34] 2025-10-13 18:17:27,155 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6841069365/log.46676269._093497.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0934
[2025-10-13 20:18:34] 2025-10-13 18:17:27,167 | INFO     | adding to output.list: log.46676269._093497.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8a/b8/log.46676269._093497.job.log.tg
[2025-10-13 20:18:34] 2025-10-13 18:17:27,168 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 20:18:34] 2025-10-13 18:17:27,168 | INFO     | summary of transferred files:
[2025-10-13 20:18:34] 2025-10-13 18:17:27,168 | INFO     |  -- lfn=log.46676269._093497.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 20:18:34] 2025-10-13 18:17:27,168 | INFO     | stage-out finished correctly
[2025-10-13 20:18:34] 2025-10-13 18:17:28,474 | INFO     | time since job start (4746s) is within the limit (172800.0s)
[2025-10-13 20:18:34] 2025-10-13 18:17:29,575 | WARNING  | process 3973851 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 20:18:34] 2025-10-13 18:17:29,576 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6841069365/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 20:18:34] 2025-10-13 18:17:29,611 | INFO     | number of running child processes to parent process 3973851: 1
[2025-10-13 20:18:34] 2025-10-13 18:17:29,611 | INFO     | maximum number of monitored processes: 6
[2025-10-13 20:18:34] 2025-10-13 18:17:30,479 | INFO     | time since job start (4748s) is within the limit (172800.0s)
[2025-10-13 20:18:34] 2025-10-13 18:17:30,573 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 20:18:34] 2025-10-13 18:17:30,854 | INFO     | job 6841069365 has state=finished
[2025-10-13 20:18:34] 2025-10-13 18:17:30,854 | INFO     | preparing for final server update for job 6841069365 in state='finished'
[2025-10-13 20:18:34] 2025-10-13 18:17:31,452 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 20:18:34] 2025-10-13 18:17:31,452 | INFO     | this job has now completed (state=finished)
[2025-10-13 20:18:34] 2025-10-13 18:17:31,452 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 20:18:34] 2025-10-13 18:17:31,452 | INFO     | log transfer has been attempted: DONE
[2025-10-13 20:18:34] 2025-10-13 18:17:31,452 | INFO     | job 6841069365 has finished - writing final server update
[2025-10-13 20:18:34] 2025-10-13 18:17:31,453 | INFO     | total number of processed events: 400 (read)
[2025-10-13 20:18:34] 2025-10-13 18:17:31,453 | INFO     | executing command: lscpu
[2025-10-13 20:18:34] 2025-10-13 18:17:31,468 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 20:18:34] 2025-10-13 18:17:32,114 | INFO     | monitor loop #365: job 0:6841069365 is in state 'finished'
[2025-10-13 20:18:34] 2025-10-13 18:17:32,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:18:34] 2025-10-13 18:17:32,485 | INFO     | time since job start (4750s) is within the limit (172800.0s)
[2025-10-13 20:18:34] 2025-10-13 18:17:34,490 | INFO     | time since job start (4752s) is within the limit (172800.0s)
[2025-10-13 20:18:34] 2025-10-13 18:17:34,617 | INFO     | monitor loop #366: job 0:6841069365 is in state 'finished'
[2025-10-13 20:18:34] 2025-10-13 18:17:34,617 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:18:34] 2025-10-13 18:17:35,570 | INFO     | PID=3967404 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:18:34] 2025-10-13 18:17:36,050 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 20:18:34] 2025-10-13 18:17:36,051 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3717.222916666667
[2025-10-13 20:18:34] 2025-10-13 18:17:36,052 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6841069365/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 20:18:34] 2025-10-13 18:17:36,052 | INFO     | extracted standard info from prmon json
[2025-10-13 20:18:34] 2025-10-13 18:17:36,052 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 20:18:34] 2025-10-13 18:17:36,052 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 20:18:34] 2025-10-13 18:17:36,052 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 20:18:34] 2025-10-13 18:17:36,053 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 20:18:34] 2025-10-13 18:17:36,053 | INFO     | fitting pss+swap vs Time
[2025-10-13 20:18:34] 2025-10-13 18:17:36,053 | INFO     | sum of square deviations: 110960220.0
[2025-10-13 20:18:34] 2025-10-13 18:17:36,053 | INFO     | sum of deviations: -7005911000.000001
[2025-10-13 20:18:34] 2025-10-13 18:17:36,053 | INFO     | mean x: 1760377161.0
[2025-10-13 20:18:34] 2025-10-13 18:17:36,053 | INFO     | mean y: 2412352.5352112674
[2025-10-13 20:18:34] 2025-10-13 18:17:36,053 | INFO     | -- intersect: 111150765486.64645
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | intersect: 111150765486.64645
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | chi2: 0.12174060351486744
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | -- intersect: 111150765486.64645
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | current memory leak: -63.14 B/s (using 71 data points, chi2=0.12)
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | could have reported an average CPU frequency of 3801 MHz (6 samples)
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | ..............................
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | . Timing measurements:
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | . get job = 0 s
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | . initial setup = 1 s
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | . payload setup = 2 s
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | . stage-in = 0 s
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | . payload execution = 4725 s
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | . stage-out = 0 s
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | . log creation = 0 s
[2025-10-13 20:18:34] 2025-10-13 18:17:36,054 | INFO     | ..............................
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | 
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | job summary report
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | --------------------------------------------------
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | PanDA job id: 6841069365
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | task id: 46676269
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | errors: (none)
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | pilot state: finished 
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | transexitcode: 0
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | exeerrorcode: 0
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | exeerrordiag: 
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | exitcode: 0
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | exitmsg: OK
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | cpuconsumptiontime: 13557 s
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | nevents: 400
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | neventsw: 0
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | pid: 3973851
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | pgrp: 3973851
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | corecount: 3
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | event service: False
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | sizes: {0: 2348860, 2: 2349122, 11: 2349150, 4731: 2384540, 4735: 2384540, 4740: 2384734}
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | --------------------------------------------------
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | 
[2025-10-13 20:18:34] 2025-10-13 18:17:36,084 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-13 20:18:34] 2025-10-13 18:17:36,096 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,096 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,096 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,096 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,096 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,096 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,096 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | job 6841069365 has completed (purged errors)
[2025-10-13 20:18:34] 2025-10-13 18:17:36,097 | INFO     | overall cleanup function is called
[2025-10-13 20:18:34] 2025-10-13 18:17:37,103 | INFO     | --- collectZombieJob: --- 10, [3973851]
[2025-10-13 20:18:34] 2025-10-13 18:17:37,104 | INFO     | zombie collector waiting for pid 3973851
[2025-10-13 20:18:34] 2025-10-13 18:17:37,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 20:18:34] 2025-10-13 18:17:37,104 | INFO     | collected zombie processes
[2025-10-13 20:18:34] 2025-10-13 18:17:37,104 | INFO     | will attempt to kill all subprocesses of pid=3973851
[2025-10-13 20:18:34] 2025-10-13 18:17:37,146 | INFO     | process IDs to be killed: [3973851] (in reverse order)
[2025-10-13 20:18:34] 2025-10-13 18:17:37,170 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 20:18:34] 2025-10-13 18:17:37,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 20:18:34] 2025-10-13 18:17:37,171 | INFO     | did not find any defunct processes belonging to 3973851
[2025-10-13 20:18:34] 2025-10-13 18:17:37,172 | INFO     | did not find any defunct processes belonging to 3973851
[2025-10-13 20:18:34] 2025-10-13 18:17:37,172 | INFO     | ready for new job
[2025-10-13 20:18:34] 2025-10-13 18:17:37,172 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 20:18:34] 2025-10-13 18:17:37,173 | INFO     | ***************************************
[2025-10-13 20:18:34] 2025-10-13 18:17:37,173 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 20:18:34] 2025-10-13 18:17:37,173 | INFO     | ***************************************
[2025-10-13 20:18:34] 2025-10-13 18:17:37,173 | INFO     | 
[2025-10-13 20:18:34] 2025-10-13 18:17:37,173 | INFO     | architecture information:
[2025-10-13 20:18:34] 2025-10-13 18:17:37,173 | INFO     | executing command: cat /etc/os-release
[2025-10-13 20:18:34] 2025-10-13 18:17:37,182 | INFO     | cat /etc/os-release:
[2025-10-13 20:18:34] NAME="CentOS Linux"
[2025-10-13 20:18:34] VERSION="7 (Core)"
[2025-10-13 20:18:34] ID="centos"
[2025-10-13 20:18:34] ID_LIKE="rhel fedora"
[2025-10-13 20:18:34] VERSION_ID="7"
[2025-10-13 20:18:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 20:18:34] ANSI_COLOR="0;31"
[2025-10-13 20:18:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 20:18:34] HOME_URL="https://www.centos.org/"
[2025-10-13 20:18:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 20:18:34] 
[2025-10-13 20:18:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 20:18:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 20:18:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 20:18:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 20:18:34] 
[2025-10-13 20:18:34] 2025-10-13 18:17:37,182 | INFO     | ***************************************
[2025-10-13 20:18:34] 2025-10-13 18:17:37,683 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 20:18:34] 2025-10-13 18:17:37,696 | INFO     | sufficient remaining disk space (326986891264 B)
[2025-10-13 20:18:34] 2025-10-13 18:17:37,696 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 20:18:34] 2025-10-13 18:17:37,696 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 20:18:34] 2025-10-13 18:17:37,696 | INFO     | update_server=False
[2025-10-13 20:18:34] 2025-10-13 18:17:37,696 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 20:18:34] 2025-10-13 18:17:37,696 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:18:34] 2025-10-13 18:17:37,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 20:18:34] 2025-10-13 18:17:38,125 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:18:34] 2025-10-13 18:17:38,125 | INFO     | aborting loop
[2025-10-13 20:18:34] 2025-10-13 18:17:38,503 | INFO     | all payload control threads have been joined
[2025-10-13 20:18:34] 2025-10-13 18:17:38,583 | INFO     | all data control threads have been joined
[2025-10-13 20:18:34] 2025-10-13 18:17:38,702 | INFO     | [job] retrieve thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:38,702 | INFO     | [job] queue monitor thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:38,740 | INFO     | [data] copytool_in thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:38,860 | INFO     | all job control threads have been joined
[2025-10-13 20:18:34] 2025-10-13 18:17:39,131 | INFO     | [job] job monitor thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:39,135 | INFO     | [payload] validate_post thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:39,341 | INFO     | [job] validate thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:39,385 | INFO     | [payload] failed_post thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:39,409 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:39,409 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:39,509 | INFO     | [payload] control thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:39,585 | INFO     | [data] control thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:39,716 | INFO     | [data] copytool_out thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:39,866 | INFO     | [job] control thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:39,905 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:41,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 20:18:34] 2025-10-13 18:17:45,122 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:17:47,761 | INFO     | job.realtimelogging is not enabled
[2025-10-13 20:18:34] 2025-10-13 18:17:48,767 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 20:18:34] 2025-10-13 18:18:07,672 | INFO     | PID=3967404 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:18:34] 2025-10-13 18:18:07,673 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 20:18:34] 2025-10-13 18:18:07,673 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 20:18:34] 2025-10-13 18:18:07,673 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 20:18:34] 2025-10-13 18:18:28,015 | INFO     | [monitor] cgroup control has ended
[2025-10-13 20:18:34] 2025-10-13 18:18:29,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411418785600)>', '<ExcThread(monitor, started 140410928228096)>']
[2025-10-13 20:18:34] 2025-10-13 18:18:29,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 20:18:34] 2025-10-13 18:18:29,783 | INFO     | [monitor] control thread has ended
[2025-10-13 20:18:34] 2025-10-13 18:18:34,055 | INFO     | all workflow threads have been joined
[2025-10-13 20:18:34] 2025-10-13 18:18:34,055 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 20:18:34] 2025-10-13 18:18:34,055 | INFO     | traces error code: 0
[2025-10-13 20:18:34] 2025-10-13 18:18:34,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 20:18:34] 2025-10-13 18:18:34,105 [wrapper] ==== pilot stdout END ====
[2025-10-13 20:18:34] 2025-10-13 18:18:34,107 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 20:18:34] 2025-10-13 18:18:34,109 [wrapper] pilotpid: 3967404
[2025-10-13 20:18:34] 2025-10-13 18:18:34,112 [wrapper] Pilot exit status: 0
[2025-10-13 20:18:34] 2025-10-13 18:18:34,119 [wrapper] pandaids: 6841069365
[2025-10-13 20:18:34] 2025-10-13 18:18:34,135 [wrapper] cleanup supervisor_pilot 3985618 3967405
[2025-10-13 20:18:34] 2025-10-13 18:18:34,137 [wrapper] Test setup, not cleaning
[2025-10-13 20:18:34] 2025-10-13 18:18:34,139 [wrapper] apfmon messages muted
[2025-10-13 20:18:34] 2025-10-13 18:18:34,142 [wrapper] ==== wrapper stdout END ====
[2025-10-13 20:18:34] 2025-10-13 18:18:34,144 [wrapper] ==== wrapper stderr END ====
[2025-10-13 20:18:34]  *** Error codes and diagnostics ***
[2025-10-13 20:18:34]     "exeErrorCode": 0,
[2025-10-13 20:18:34]     "exeErrorDiag": "",
[2025-10-13 20:18:34]     "pilotErrorCode": 0,
[2025-10-13 20:18:34]     "pilotErrorDiag": "",
[2025-10-13 20:18:34]  *** Listing of results directory ***
[2025-10-13 20:18:34] total 401348
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:48 queuedata.json
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:48 pilot3.tar.gz
[2025-10-13 20:18:34] -rwx------ 1 boinc boinc     36292 Oct 13 02:50 runpilot2-wrapper.sh
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc       100 Oct 13 18:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 20:18:34] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 18:58 run_atlas
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc       105 Oct 13 18:58 job.xml
[2025-10-13 20:18:34] -rw-r--r-- 2 boinc boinc 219863127 Oct 13 18:58 EVNT.46676267._004706.pool.root.1
[2025-10-13 20:18:34] drwxrwx--x 2 boinc boinc      4096 Oct 13 18:58 shared
[2025-10-13 20:18:34] -rw-r--r-- 2 boinc boinc    569682 Oct 13 18:58 input.tar.gz
[2025-10-13 20:18:34] -rw-r--r-- 2 boinc boinc     15120 Oct 13 18:58 start_atlas.sh
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc         0 Oct 13 18:58 boinc_setup_complete
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc      6441 Oct 13 18:58 init_data.xml
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc         0 Oct 13 18:58 boinc_lockfile
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc      2550 Oct 13 18:58 pandaJob.out
[2025-10-13 20:18:34] -rw------- 1 boinc boinc    972783 Oct 13 18:58 agis_schedconf.cvmfs.json
[2025-10-13 20:18:34] -rw------- 1 boinc boinc   1560580 Oct 13 18:58 agis_ddmendpoints.agis.ALL.json
[2025-10-13 20:18:34] drwx------ 5 boinc boinc      4096 Oct 13 18:58 pilot3
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc       529 Oct 13 20:17 boinc_task_state.xml
[2025-10-13 20:18:34] -rw------- 1 boinc boinc 185290361 Oct 13 20:17 HITS.46676269._093497.pool.root.1
[2025-10-13 20:18:34] -rw------- 1 boinc boinc      1031 Oct 13 20:17 memory_monitor_summary.json
[2025-10-13 20:18:34] -rw------- 1 boinc boinc    259559 Oct 13 20:17 log.46676269._093497.job.log.tgz.1
[2025-10-13 20:18:34] -rw------- 1 boinc boinc      7764 Oct 13 20:17 heartbeat.json
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc        27 Oct 13 20:18 wrapper_checkpoint.txt
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc      8192 Oct 13 20:18 boinc_mmap_file
[2025-10-13 20:18:34] -rw------- 1 boinc boinc        95 Oct 13 20:18 pilot_heartbeat.json
[2025-10-13 20:18:34] -rw------- 1 boinc boinc      4824 Oct 13 20:18 pilotlog.txt
[2025-10-13 20:18:34] -rw------- 1 boinc boinc    701282 Oct 13 20:18 log.46676269._093497.job.log.1
[2025-10-13 20:18:34] -rw------- 1 boinc boinc       357 Oct 13 20:18 output.list
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc       620 Oct 13 20:18 runtime_log
[2025-10-13 20:18:34] -rw------- 1 boinc boinc    983040 Oct 13 20:18 result.tar.gz
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc      8787 Oct 13 20:18 runtime_log.err
[2025-10-13 20:18:34] -rw------- 1 boinc boinc       660 Oct 13 20:18 pWLLDmVwLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZFmNDmY8JeEm.diag
[2025-10-13 20:18:34] -rw-r--r-- 1 boinc boinc     22276 Oct 13 20:18 stderr.txt
[2025-10-13 20:18:34] HITS file was successfully produced:
[2025-10-13 20:18:34] -rw------- 1 boinc boinc 185290361 Oct 13 20:17 shared/HITS.pool.root.1
[2025-10-13 20:18:34]  *** Contents of shared directory: ***
[2025-10-13 20:18:34] total 397204
[2025-10-13 20:18:34] -rw-r--r-- 2 boinc boinc 219863127 Oct 13 18:58 ATLAS.root_0
[2025-10-13 20:18:34] -rw-r--r-- 2 boinc boinc    569682 Oct 13 18:58 input.tar.gz
[2025-10-13 20:18:34] -rw-r--r-- 2 boinc boinc     15120 Oct 13 18:58 start_atlas.sh
[2025-10-13 20:18:34] -rw------- 1 boinc boinc 185290361 Oct 13 20:17 HITS.pool.root.1
[2025-10-13 20:18:34] -rw------- 1 boinc boinc    983040 Oct 13 20:18 result.tar.gz
20:18:36 (3963689): run_atlas exited; CPU time 13573.725942
20:18:36 (3963689): called boinc_finish(0)

</stderr_txt>
]]>

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