Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:53:59 (26971): wrapper (7.7.26015): starting
01:53:59 (26971): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 01:53:59] Arguments: --nthreads 12
[2025-10-13 01:53:59] Threads: 12
[2025-10-13 01:53:59] Checking for CVMFS
[2025-10-13 01:54:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:54:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:54:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:54:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:54:00] 2.11.2.0 3165 9548 84340 151650 2 57 12603866 20275201 1 130560 0 9373830 99.993 316074 43452 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 01:54:00] CVMFS is ok
[2025-10-13 01:54:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:54:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:54:00] Further information can be found at the LHC@home message board.
[2025-10-13 01:54:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:54:00] Checking for apptainer binary...
[2025-10-13 01:54:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:54:00] Running /usr/bin/apptainer --version
[2025-10-13 01:54:00] apptainer version 1.3.2-1.el7
[2025-10-13 01:54:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:54:01] c-115-40.aglt2.org
[2025-10-13 01:54:01] apptainer works
[2025-10-13 01:54:01] Set ATHENA_PROC_NUMBER=12
[2025-10-13 01:54:01] Set ATHENA_CORE_NUMBER=12
[2025-10-13 01:54:01] Starting ATLAS job with PandaID=6841069297
[2025-10-13 01:54:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:00:42]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:00:42] 2025-10-13 07:00:03,352 | INFO     |  -- lfn=log.46676269._093429.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 03:00:42] 2025-10-13 07:00:03,353 | INFO     | stage-out finished correctly
[2025-10-13 03:00:42] 2025-10-13 07:00:03,429 | INFO     | time since job start (3947s) is within the limit (172800.0s)
[2025-10-13 03:00:42] 2025-10-13 07:00:03,444 | WARNING  | process 4801 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 03:00:42] 2025-10-13 07:00:03,444 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841069297/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:00:42] 2025-10-13 07:00:03,449 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841069297/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:00:42] 2025-10-13 07:00:03,451 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 03:00:42] 2025-10-13 07:00:03,451 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 03:00:42] 2025-10-13 07:00:03,453 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3838580 B
[2025-10-13 03:00:42] 2025-10-13 07:00:03,453 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15548 B
[2025-10-13 03:00:42] 2025-10-13 07:00:03,453 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 03:00:42] 2025-10-13 07:00:03,469 | INFO     | sufficient remaining disk space (18694012928 B)
[2025-10-13 03:00:42] 2025-10-13 07:00:03,470 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 03:00:42] 2025-10-13 07:00:03,471 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6841069297: 4133226 B (within 2537553920 B limit)
[2025-10-13 03:00:42] 2025-10-13 07:00:03,471 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6841069297/HITS.46676269._093429.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 03:00:42] 2025-10-13 07:00:03,471 | INFO     | total size of present files: 0 B (workdir size: 4133226 B)
[2025-10-13 03:00:42] 2025-10-13 07:00:03,471 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6841069297/HITS.46676269._093429.pool.root.1 since it does not exist
[2025-10-13 03:00:42] 2025-10-13 07:00:03,564 | INFO     | number of running child processes to parent process 4801: 1
[2025-10-13 03:00:42] 2025-10-13 07:00:03,564 | INFO     | maximum number of monitored processes: 6
[2025-10-13 03:00:42] 2025-10-13 07:00:04,541 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 03:00:42] 2025-10-13 07:00:05,143 | INFO     | job 6841069297 has state=finished
[2025-10-13 03:00:42] 2025-10-13 07:00:05,144 | INFO     | preparing for final server update for job 6841069297 in state='finished'
[2025-10-13 03:00:42] 2025-10-13 07:00:05,144 | INFO     | this job has now completed (state=finished)
[2025-10-13 03:00:42] 2025-10-13 07:00:05,145 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 03:00:42] 2025-10-13 07:00:05,145 | INFO     | log transfer has been attempted: DONE
[2025-10-13 03:00:42] 2025-10-13 07:00:05,145 | INFO     | job 6841069297 has finished - writing final server update
[2025-10-13 03:00:42] 2025-10-13 07:00:05,146 | INFO     | total number of processed events: 400 (read)
[2025-10-13 03:00:42] 2025-10-13 07:00:05,147 | INFO     | executing command: lscpu
[2025-10-13 03:00:42] 2025-10-13 07:00:05,173 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 03:00:42] 2025-10-13 07:00:05,435 | INFO     | time since job start (3949s) is within the limit (172800.0s)
[2025-10-13 03:00:42] 2025-10-13 07:00:06,071 | INFO     | monitor loop #294: job 0:6841069297 is in state 'finished'
[2025-10-13 03:00:42] 2025-10-13 07:00:06,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:00:42] 2025-10-13 07:00:07,441 | INFO     | time since job start (3951s) is within the limit (172800.0s)
[2025-10-13 03:00:42] 2025-10-13 07:00:08,574 | INFO     | monitor loop #295: job 0:6841069297 is in state 'finished'
[2025-10-13 03:00:42] 2025-10-13 07:00:08,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:00:42] 2025-10-13 07:00:09,446 | INFO     | time since job start (3953s) is within the limit (172800.0s)
[2025-10-13 03:00:42] 2025-10-13 07:00:09,721 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 03:00:42] 2025-10-13 07:00:09,724 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-13 03:00:42] 2025-10-13 07:00:09,726 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841069297/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:00:42] 2025-10-13 07:00:09,726 | INFO     | extracted standard info from prmon json
[2025-10-13 03:00:42] 2025-10-13 07:00:09,726 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:00:42] 2025-10-13 07:00:09,726 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:00:42] 2025-10-13 07:00:09,727 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:00:42] 2025-10-13 07:00:09,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:00:42] 2025-10-13 07:00:09,728 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:00:42] 2025-10-13 07:00:09,728 | INFO     | sum of square deviations: 60482994.5
[2025-10-13 03:00:42] 2025-10-13 07:00:09,729 | INFO     | sum of deviations: -6121183165.000001
[2025-10-13 03:00:42] 2025-10-13 07:00:09,729 | INFO     | mean x: 1760336927.5
[2025-10-13 03:00:42] 2025-10-13 07:00:09,729 | INFO     | mean y: 2878935.5862068967
[2025-10-13 03:00:42] 2025-10-13 07:00:09,729 | INFO     | -- intersect: 178157827354.0351
[2025-10-13 03:00:42] 2025-10-13 07:00:09,729 | INFO     | intersect: 178157827354.0351
[2025-10-13 03:00:42] 2025-10-13 07:00:09,729 | INFO     | chi2: 0.053051006665025706
[2025-10-13 03:00:42] 2025-10-13 07:00:09,729 | INFO     | -- intersect: 178157827354.0351
[2025-10-13 03:00:42] 2025-10-13 07:00:09,729 | INFO     | current memory leak: -101.21 B/s (using 58 data points, chi2=0.05)
[2025-10-13 03:00:42] 2025-10-13 07:00:09,730 | INFO     | could have reported an average CPU frequency of 2150 MHz (6 samples)
[2025-10-13 03:00:42] 2025-10-13 07:00:09,730 | INFO     | ..............................
[2025-10-13 03:00:42] 2025-10-13 07:00:09,730 | INFO     | . Timing measurements:
[2025-10-13 03:00:42] 2025-10-13 07:00:09,730 | INFO     | . get job = 0 s
[2025-10-13 03:00:42] 2025-10-13 07:00:09,730 | INFO     | . initial setup = 2 s
[2025-10-13 03:00:42] 2025-10-13 07:00:09,730 | INFO     | . payload setup = 6 s
[2025-10-13 03:00:42] 2025-10-13 07:00:09,730 | INFO     | . stage-in = 0 s
[2025-10-13 03:00:42] 2025-10-13 07:00:09,730 | INFO     | . payload execution = 3919 s
[2025-10-13 03:00:42] 2025-10-13 07:00:09,731 | INFO     | . stage-out = 0 s
[2025-10-13 03:00:42] 2025-10-13 07:00:09,731 | INFO     | . log creation = 0 s
[2025-10-13 03:00:42] 2025-10-13 07:00:09,731 | INFO     | ..............................
[2025-10-13 03:00:42] 2025-10-13 07:00:09,887 | INFO     | 
[2025-10-13 03:00:42] 2025-10-13 07:00:09,887 | INFO     | job summary report
[2025-10-13 03:00:42] 2025-10-13 07:00:09,887 | INFO     | --------------------------------------------------
[2025-10-13 03:00:42] 2025-10-13 07:00:09,887 | INFO     | PanDA job id: 6841069297
[2025-10-13 03:00:42] 2025-10-13 07:00:09,888 | INFO     | task id: 46676269
[2025-10-13 03:00:42] 2025-10-13 07:00:09,888 | INFO     | errors: (none)
[2025-10-13 03:00:42] 2025-10-13 07:00:09,888 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:00:42] 2025-10-13 07:00:09,888 | INFO     | pilot state: finished 
[2025-10-13 03:00:42] 2025-10-13 07:00:09,888 | INFO     | transexitcode: 0
[2025-10-13 03:00:42] 2025-10-13 07:00:09,888 | INFO     | exeerrorcode: 0
[2025-10-13 03:00:42] 2025-10-13 07:00:09,889 | INFO     | exeerrordiag: 
[2025-10-13 03:00:42] 2025-10-13 07:00:09,889 | INFO     | exitcode: 0
[2025-10-13 03:00:42] 2025-10-13 07:00:09,889 | INFO     | exitmsg: OK
[2025-10-13 03:00:42] 2025-10-13 07:00:09,889 | INFO     | cpuconsumptiontime: 42272 s
[2025-10-13 03:00:42] 2025-10-13 07:00:09,889 | INFO     | nevents: 400
[2025-10-13 03:00:42] 2025-10-13 07:00:09,889 | INFO     | neventsw: 0
[2025-10-13 03:00:42] 2025-10-13 07:00:09,890 | INFO     | pid: 4801
[2025-10-13 03:00:42] 2025-10-13 07:00:09,890 | INFO     | pgrp: 4801
[2025-10-13 03:00:42] 2025-10-13 07:00:09,890 | INFO     | corecount: 12
[2025-10-13 03:00:42] 2025-10-13 07:00:09,890 | INFO     | event service: False
[2025-10-13 03:00:42] 2025-10-13 07:00:09,890 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 3929: 2374960, 3930: 2374959, 3931: 2384013, 3932: 2384225, 3937: 2384419}
[2025-10-13 03:00:42] 2025-10-13 07:00:09,890 | INFO     | --------------------------------------------------
[2025-10-13 03:00:42] 2025-10-13 07:00:09,890 | INFO     | 
[2025-10-13 03:00:42] 2025-10-13 07:00:09,891 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 03:00:42] 2025-10-13 07:00:09,914 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,915 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,915 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,915 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,915 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,916 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,916 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,916 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,916 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,918 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:00:42] 2025-10-13 07:00:09,918 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,918 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:00:42] 2025-10-13 07:00:09,918 | INFO     | job 6841069297 has completed (purged errors)
[2025-10-13 03:00:42] 2025-10-13 07:00:09,919 | INFO     | overall cleanup function is called
[2025-10-13 03:00:42] 2025-10-13 07:00:10,927 | INFO     | --- collectZombieJob: --- 10, [4801]
[2025-10-13 03:00:42] 2025-10-13 07:00:10,927 | INFO     | zombie collector waiting for pid 4801
[2025-10-13 03:00:42] 2025-10-13 07:00:10,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:00:42] 2025-10-13 07:00:10,927 | INFO     | collected zombie processes
[2025-10-13 03:00:42] 2025-10-13 07:00:10,928 | INFO     | will attempt to kill all subprocesses of pid=4801
[2025-10-13 03:00:42] 2025-10-13 07:00:11,017 | INFO     | process IDs to be killed: [4801] (in reverse order)
[2025-10-13 03:00:42] 2025-10-13 07:00:11,070 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:00:42] 2025-10-13 07:00:11,070 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:00:42] 2025-10-13 07:00:11,072 | INFO     | did not find any defunct processes belonging to 4801
[2025-10-13 03:00:42] 2025-10-13 07:00:11,074 | INFO     | did not find any defunct processes belonging to 4801
[2025-10-13 03:00:42] 2025-10-13 07:00:11,075 | INFO     | ready for new job
[2025-10-13 03:00:42] 2025-10-13 07:00:11,075 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:00:42] 2025-10-13 07:00:11,076 | INFO     | ***************************************
[2025-10-13 03:00:42] 2025-10-13 07:00:11,076 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:00:42] 2025-10-13 07:00:11,076 | INFO     | ***************************************
[2025-10-13 03:00:42] 2025-10-13 07:00:11,076 | INFO     | 
[2025-10-13 03:00:42] 2025-10-13 07:00:11,077 | INFO     | architecture information:
[2025-10-13 03:00:42] 2025-10-13 07:00:11,077 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:00:42] 2025-10-13 07:00:11,092 | INFO     | cat /etc/os-release:
[2025-10-13 03:00:42] NAME="CentOS Linux"
[2025-10-13 03:00:42] VERSION="7 (Core)"
[2025-10-13 03:00:42] ID="centos"
[2025-10-13 03:00:42] ID_LIKE="rhel fedora"
[2025-10-13 03:00:42] VERSION_ID="7"
[2025-10-13 03:00:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:00:42] ANSI_COLOR="0;31"
[2025-10-13 03:00:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:00:42] HOME_URL="https://www.centos.org/"
[2025-10-13 03:00:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:00:42] 
[2025-10-13 03:00:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:00:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:00:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:00:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:00:42] 
[2025-10-13 03:00:42] 2025-10-13 07:00:11,092 | INFO     | ***************************************
[2025-10-13 03:00:42] 2025-10-13 07:00:11,595 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 03:00:42] 2025-10-13 07:00:11,611 | INFO     | sufficient remaining disk space (18698207232 B)
[2025-10-13 03:00:42] 2025-10-13 07:00:11,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:00:42] 2025-10-13 07:00:11,612 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:00:42] 2025-10-13 07:00:11,612 | INFO     | update_server=False
[2025-10-13 03:00:42] 2025-10-13 07:00:11,612 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:00:42] 2025-10-13 07:00:11,613 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:00:42] 2025-10-13 07:00:11,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:00:42] 2025-10-13 07:00:11,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:00:42] 2025-10-13 07:00:11,914 | INFO     | all data control threads have been joined
[2025-10-13 03:00:42] 2025-10-13 07:00:11,970 | INFO     | all payload control threads have been joined
[2025-10-13 03:00:42] 2025-10-13 07:00:12,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:00:42] 2025-10-13 07:00:12,082 | INFO     | aborting loop
[2025-10-13 03:00:42] 2025-10-13 07:00:12,618 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:12,619 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:12,710 | INFO     | [job] validate thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:12,831 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:12,867 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:12,919 | INFO     | [data] control thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:12,974 | INFO     | all job control threads have been joined
[2025-10-13 03:00:42] 2025-10-13 07:00:12,975 | INFO     | [payload] control thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:13,088 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:13,144 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:13,403 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:13,619 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:13,637 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:13,967 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:13,979 | INFO     | [job] control thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:15,619 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:22,199 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:00:42] 2025-10-13 07:00:22,517 | INFO     | job.realtimelogging is not enabled
[2025-10-13 03:00:42] 2025-10-13 07:00:23,522 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:00:42] 2025-10-13 07:00:24,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139712483821376)>', '<ExcThread(monitor, started 139712048125696)>']
[2025-10-13 03:00:42] 2025-10-13 07:00:29,268 | INFO     | all workflow threads have been joined
[2025-10-13 03:00:42] 2025-10-13 07:00:29,268 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:00:42] 2025-10-13 07:00:29,269 | INFO     | traces error code: 0
[2025-10-13 03:00:42] 2025-10-13 07:00:29,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:00:42] 2025-10-13 07:00:42,648 | INFO     | PID=30696 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 03:00:42] 2025-10-13 07:00:42,649 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:00:42] 2025-10-13 07:00:42,649 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:00:42] 2025-10-13 07:00:42,649 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:00:42] 2025-10-13 07:00:42,649 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:00:42] 2025-10-13 07:00:42,649 | INFO     | [monitor] control thread has ended
[2025-10-13 03:00:42] 2025-10-13 07:00:42,742 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:00:42] 2025-10-13 07:00:42,746 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:00:42] 2025-10-13 07:00:42,756 [wrapper] pilotpid: 30696
[2025-10-13 03:00:42] 2025-10-13 07:00:42,760 [wrapper] Pilot exit status: 0
[2025-10-13 03:00:42] 2025-10-13 07:00:42,775 [wrapper] pandaids: 6841069297
[2025-10-13 03:00:42] 2025-10-13 07:00:42,811 [wrapper] cleanup supervisor_pilot  2973 30697
[2025-10-13 03:00:42] 2025-10-13 07:00:42,815 [wrapper] Test setup, not cleaning
[2025-10-13 03:00:42] 2025-10-13 07:00:42,819 [wrapper] apfmon messages muted
[2025-10-13 03:00:42] 2025-10-13 07:00:42,822 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:00:42] 2025-10-13 07:00:42,826 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:00:42]  *** Error codes and diagnostics ***
[2025-10-13 03:00:42]     "exeErrorCode": 0,
[2025-10-13 03:00:42]     "exeErrorDiag": "",
[2025-10-13 03:00:42]     "pilotErrorCode": 0,
[2025-10-13 03:00:42]     "pilotErrorDiag": "",
[2025-10-13 03:00:42]  *** Listing of results directory ***
[2025-10-13 03:00:42] total 415012
[2025-10-13 03:00:42] -rwx------ 1 boincer umatlas     36292 Oct 12 20:48 runpilot2-wrapper.sh
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 20:48 queuedata.json
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:48 pilot3.tar.gz
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas       100 Oct 13 01:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:00:42] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 01:53 run_atlas
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas       105 Oct 13 01:53 job.xml
[2025-10-13 03:00:42] -rw-r--r-- 2 boincer umatlas 223120623 Oct 13 01:53 EVNT.46676267._004704.pool.root.1
[2025-10-13 03:00:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:53 start_atlas.sh
[2025-10-13 03:00:42] drwxrwx--x 2 boincer umatlas      4096 Oct 13 01:53 shared
[2025-10-13 03:00:42] -rw-r--r-- 2 boincer umatlas    569667 Oct 13 01:53 input.tar.gz
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas         0 Oct 13 01:53 boinc_lockfile
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 01:54 pandaJob.out
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas    973230 Oct 13 01:54 agis_schedconf.cvmfs.json
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas   1560580 Oct 13 01:54 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:00:42] drwx------ 5 boincer umatlas      4096 Oct 13 01:54 pilot3
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 02:58 init_data.xml
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas 196070407 Oct 13 02:59 HITS.46676269._093429.pool.root.1
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas      1050 Oct 13 02:59 memory_monitor_summary.json
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas    365929 Oct 13 03:00 log.46676269._093429.job.log.tgz.1
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas       529 Oct 13 03:00 boinc_task_state.xml
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas        95 Oct 13 03:00 pilot_heartbeat.json
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas      7858 Oct 13 03:00 heartbeat.json
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 03:00 boinc_mmap_file
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas        27 Oct 13 03:00 wrapper_checkpoint.txt
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas       745 Oct 13 03:00 pilotlog.txt
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas    580856 Oct 13 03:00 log.46676269._093429.job.log.1
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas       357 Oct 13 03:00 output.list
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas       620 Oct 13 03:00 runtime_log
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas    962560 Oct 13 03:00 result.tar.gz
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 03:00 runtime_log.err
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas       659 Oct 13 03:00 e8dKDmyuLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoEmNDmh77PEo.diag
[2025-10-13 03:00:42] -rw-r--r-- 1 boincer umatlas     22389 Oct 13 03:00 stderr.txt
[2025-10-13 03:00:42] HITS file was successfully produced:
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas 196070407 Oct 13 02:59 shared/HITS.pool.root.1
[2025-10-13 03:00:42]  *** Contents of shared directory: ***
[2025-10-13 03:00:42] total 410888
[2025-10-13 03:00:42] -rw-r--r-- 2 boincer umatlas 223120623 Oct 13 01:53 ATLAS.root_0
[2025-10-13 03:00:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:53 start_atlas.sh
[2025-10-13 03:00:42] -rw-r--r-- 2 boincer umatlas    569667 Oct 13 01:53 input.tar.gz
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas 196070407 Oct 13 02:59 HITS.pool.root.1
[2025-10-13 03:00:42] -rw------- 1 boincer umatlas    962560 Oct 13 03:00 result.tar.gz
03:00:44 (26971): run_atlas exited; CPU time 42269.399217
03:00:44 (26971): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN