Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:36:35 (5653): wrapper (7.7.26015): starting
01:36:35 (5653): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 01:36:35] Arguments: --nthreads 12
[2025-10-13 01:36:35] Threads: 12
[2025-10-13 01:36:35] Checking for CVMFS
[2025-10-13 01:36:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:36:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:36:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:36:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:36:36] 2.11.2.0 6893 53823 85708 151650 3 57 13354570 20275201 1 130560 0 30442194 99.957 2542234 28022 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 01:36:36] CVMFS is ok
[2025-10-13 01:36:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:36:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:36:36] Further information can be found at the LHC@home message board.
[2025-10-13 01:36:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:36:36] Checking for apptainer binary...
[2025-10-13 01:36:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:36:36] Running /usr/bin/apptainer --version
[2025-10-13 01:36:36] apptainer version 1.3.2-1.el7
[2025-10-13 01:36:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:36:37] c-205-3.aglt2.org
[2025-10-13 01:36:37] apptainer works
[2025-10-13 01:36:37] Set ATHENA_PROC_NUMBER=12
[2025-10-13 01:36:37] Set ATHENA_CORE_NUMBER=12
[2025-10-13 01:36:37] Starting ATLAS job with PandaID=6841069725
[2025-10-13 01:36:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:50:05]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:50:05] 2025-10-13 06:49:26,608 | INFO     | transferring file log.46676269._093765.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841069725/log.46676269._093765.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 02:50:05] 2025-10-13 06:49:26,608 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841069725/log.46676269._093765.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._093765.job
[2025-10-13 02:50:05] 2025-10-13 06:49:26,631 | INFO     | adding to output.list: log.46676269._093765.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/7f/log.46676269._093765.job.log.tg
[2025-10-13 02:50:05] 2025-10-13 06:49:26,632 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 02:50:05] 2025-10-13 06:49:26,632 | INFO     | summary of transferred files:
[2025-10-13 02:50:05] 2025-10-13 06:49:26,632 | INFO     |  -- lfn=log.46676269._093765.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 02:50:05] 2025-10-13 06:49:26,633 | INFO     | stage-out finished correctly
[2025-10-13 02:50:05] 2025-10-13 06:49:27,019 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 02:50:05] 2025-10-13 06:49:27,248 | INFO     | job 6841069725 has state=finished
[2025-10-13 02:50:05] 2025-10-13 06:49:27,249 | INFO     | preparing for final server update for job 6841069725 in state='finished'
[2025-10-13 02:50:05] 2025-10-13 06:49:27,249 | INFO     | this job has now completed (state=finished)
[2025-10-13 02:50:05] 2025-10-13 06:49:27,250 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 02:50:05] 2025-10-13 06:49:27,250 | INFO     | log transfer has been attempted: DONE
[2025-10-13 02:50:05] 2025-10-13 06:49:27,250 | INFO     | job 6841069725 has finished - writing final server update
[2025-10-13 02:50:05] 2025-10-13 06:49:27,250 | INFO     | total number of processed events: 400 (read)
[2025-10-13 02:50:05] 2025-10-13 06:49:27,251 | INFO     | executing command: lscpu
[2025-10-13 02:50:05] 2025-10-13 06:49:27,277 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 02:50:05] 2025-10-13 06:49:28,465 | INFO     | time since job start (4355s) is within the limit (172800.0s)
[2025-10-13 02:50:05] 2025-10-13 06:49:30,470 | INFO     | time since job start (4357s) is within the limit (172800.0s)
[2025-10-13 02:50:05] 2025-10-13 06:49:30,656 | WARNING  | process 15886 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 02:50:05] 2025-10-13 06:49:30,657 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841069725/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 02:50:05] 2025-10-13 06:49:30,658 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841069725/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 02:50:05] 2025-10-13 06:49:30,658 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 02:50:05] 2025-10-13 06:49:30,658 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 02:50:05] 2025-10-13 06:49:30,659 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4280833 B
[2025-10-13 02:50:05] 2025-10-13 06:49:30,659 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16022 B
[2025-10-13 02:50:05] 2025-10-13 06:49:30,659 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 02:50:05] 2025-10-13 06:49:31,989 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 02:50:05] 2025-10-13 06:49:31,996 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-13 02:50:05] 2025-10-13 06:49:31,999 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841069725/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 02:50:05] 2025-10-13 06:49:31,999 | INFO     | extracted standard info from prmon json
[2025-10-13 02:50:05] 2025-10-13 06:49:32,000 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 02:50:05] 2025-10-13 06:49:32,000 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 02:50:05] 2025-10-13 06:49:32,000 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 02:50:05] 2025-10-13 06:49:32,000 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 02:50:05] 2025-10-13 06:49:32,002 | INFO     | fitting pss+swap vs Time
[2025-10-13 02:50:05] 2025-10-13 06:49:32,003 | INFO     | sum of square deviations: 81266640.0
[2025-10-13 02:50:05] 2025-10-13 06:49:32,003 | INFO     | sum of deviations: -2510166165.0
[2025-10-13 02:50:05] 2025-10-13 06:49:32,003 | INFO     | mean x: 1760336068.5
[2025-10-13 02:50:05] 2025-10-13 06:49:32,003 | INFO     | mean y: 2903902.03125
[2025-10-13 02:50:05] 2025-10-13 06:49:32,003 | INFO     | -- intersect: 54376211795.378654
[2025-10-13 02:50:05] 2025-10-13 06:49:32,003 | INFO     | intersect: 54376211795.378654
[2025-10-13 02:50:05] 2025-10-13 06:49:32,004 | INFO     | chi2: 0.09884549263852929
[2025-10-13 02:50:05] 2025-10-13 06:49:32,004 | INFO     | -- intersect: 54376211795.378654
[2025-10-13 02:50:05] 2025-10-13 06:49:32,004 | INFO     | current memory leak: -30.89 B/s (using 64 data points, chi2=0.10)
[2025-10-13 02:50:05] 2025-10-13 06:49:32,004 | INFO     | could have reported an average CPU frequency of 2065 MHz (6 samples)
[2025-10-13 02:50:05] 2025-10-13 06:49:32,004 | INFO     | ..............................
[2025-10-13 02:50:05] 2025-10-13 06:49:32,004 | INFO     | . Timing measurements:
[2025-10-13 02:50:05] 2025-10-13 06:49:32,005 | INFO     | . get job = 0 s
[2025-10-13 02:50:05] 2025-10-13 06:49:32,005 | INFO     | . initial setup = 2 s
[2025-10-13 02:50:05] 2025-10-13 06:49:32,005 | INFO     | . payload setup = 7 s
[2025-10-13 02:50:05] 2025-10-13 06:49:32,005 | INFO     | . stage-in = 0 s
[2025-10-13 02:50:05] 2025-10-13 06:49:32,005 | INFO     | . payload execution = 4325 s
[2025-10-13 02:50:05] 2025-10-13 06:49:32,005 | INFO     | . stage-out = 0 s
[2025-10-13 02:50:05] 2025-10-13 06:49:32,005 | INFO     | . log creation = 0 s
[2025-10-13 02:50:05] 2025-10-13 06:49:32,005 | INFO     | ..............................
[2025-10-13 02:50:05] 2025-10-13 06:49:32,017 | INFO     | sufficient remaining disk space (29490151424 B)
[2025-10-13 02:50:05] 2025-10-13 06:49:32,023 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 02:50:05] 2025-10-13 06:49:32,089 | INFO     | 
[2025-10-13 02:50:05] 2025-10-13 06:49:32,089 | INFO     | job summary report
[2025-10-13 02:50:05] 2025-10-13 06:49:32,089 | INFO     | --------------------------------------------------
[2025-10-13 02:50:05] 2025-10-13 06:49:32,089 | INFO     | PanDA job id: 6841069725
[2025-10-13 02:50:05] 2025-10-13 06:49:32,089 | INFO     | task id: 46676269
[2025-10-13 02:50:05] 2025-10-13 06:49:32,090 | INFO     | errors: (none)
[2025-10-13 02:50:05] 2025-10-13 06:49:32,090 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 02:50:05] 2025-10-13 06:49:32,090 | INFO     | pilot state: finished 
[2025-10-13 02:50:05] 2025-10-13 06:49:32,090 | INFO     | transexitcode: 0
[2025-10-13 02:50:05] 2025-10-13 06:49:32,090 | INFO     | exeerrorcode: 0
[2025-10-13 02:50:05] 2025-10-13 06:49:32,090 | INFO     | exeerrordiag: 
[2025-10-13 02:50:05] 2025-10-13 06:49:32,090 | INFO     | exitcode: 0
[2025-10-13 02:50:05] 2025-10-13 06:49:32,091 | INFO     | exitmsg: OK
[2025-10-13 02:50:05] 2025-10-13 06:49:32,091 | INFO     | cpuconsumptiontime: 46044 s
[2025-10-13 02:50:05] 2025-10-13 06:49:32,091 | INFO     | nevents: 400
[2025-10-13 02:50:05] 2025-10-13 06:49:32,091 | INFO     | neventsw: 0
[2025-10-13 02:50:05] 2025-10-13 06:49:32,091 | INFO     | pid: 15886
[2025-10-13 02:50:05] 2025-10-13 06:49:32,091 | INFO     | pgrp: 15886
[2025-10-13 02:50:05] 2025-10-13 06:49:32,091 | INFO     | corecount: 12
[2025-10-13 02:50:05] 2025-10-13 06:49:32,092 | INFO     | event service: False
[2025-10-13 02:50:05] 2025-10-13 06:49:32,092 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 4337: 2375223, 4338: 2384405, 4343: 2384543}
[2025-10-13 02:50:05] 2025-10-13 06:49:32,092 | INFO     | --------------------------------------------------
[2025-10-13 02:50:05] 2025-10-13 06:49:32,092 | INFO     | 
[2025-10-13 02:50:05] 2025-10-13 06:49:32,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 02:50:05] 2025-10-13 06:49:32,095 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6841069725: 4578683 B (within 2537553920 B limit)
[2025-10-13 02:50:05] 2025-10-13 06:49:32,096 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6841069725/HITS.46676269._093765.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 02:50:05] 2025-10-13 06:49:32,096 | INFO     | total size of present files: 0 B (workdir size: 4578683 B)
[2025-10-13 02:50:05] 2025-10-13 06:49:32,096 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6841069725/HITS.46676269._093765.pool.root.1 since it does not exist
[2025-10-13 02:50:05] 2025-10-13 06:49:32,116 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,116 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,117 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,117 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,117 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,117 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,117 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,117 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,118 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,118 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,118 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,118 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,118 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,119 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,119 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,119 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,119 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:50:05] 2025-10-13 06:49:32,119 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,119 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:50:05] 2025-10-13 06:49:32,120 | INFO     | job 6841069725 has completed (purged errors)
[2025-10-13 02:50:05] 2025-10-13 06:49:32,120 | INFO     | overall cleanup function is called
[2025-10-13 02:50:05] 2025-10-13 06:49:32,193 | INFO     | number of running child processes to parent process 15886: 1
[2025-10-13 02:50:05] 2025-10-13 06:49:32,193 | INFO     | maximum number of monitored processes: 6
[2025-10-13 02:50:05] 2025-10-13 06:49:32,193 | INFO     | aborting job monitoring since job object (job id=6841069725) has expired
[2025-10-13 02:50:05] 2025-10-13 06:49:33,128 | INFO     | --- collectZombieJob: --- 10, [15886]
[2025-10-13 02:50:05] 2025-10-13 06:49:33,128 | INFO     | zombie collector waiting for pid 15886
[2025-10-13 02:50:05] 2025-10-13 06:49:33,129 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:50:05] 2025-10-13 06:49:33,129 | INFO     | collected zombie processes
[2025-10-13 02:50:05] 2025-10-13 06:49:33,129 | INFO     | will attempt to kill all subprocesses of pid=15886
[2025-10-13 02:50:05] 2025-10-13 06:49:33,218 | INFO     | process IDs to be killed: [15886] (in reverse order)
[2025-10-13 02:50:05] 2025-10-13 06:49:33,271 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:50:05] 2025-10-13 06:49:33,271 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:50:05] 2025-10-13 06:49:33,274 | INFO     | did not find any defunct processes belonging to 15886
[2025-10-13 02:50:05] 2025-10-13 06:49:33,277 | INFO     | did not find any defunct processes belonging to 15886
[2025-10-13 02:50:05] 2025-10-13 06:49:33,277 | INFO     | ready for new job
[2025-10-13 02:50:05] 2025-10-13 06:49:33,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:50:05] 2025-10-13 06:49:33,278 | INFO     | ***************************************
[2025-10-13 02:50:05] 2025-10-13 06:49:33,278 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:50:05] 2025-10-13 06:49:33,278 | INFO     | ***************************************
[2025-10-13 02:50:05] 2025-10-13 06:49:33,278 | INFO     | 
[2025-10-13 02:50:05] 2025-10-13 06:49:33,279 | INFO     | architecture information:
[2025-10-13 02:50:05] 2025-10-13 06:49:33,280 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:50:05] 2025-10-13 06:49:33,295 | INFO     | cat /etc/os-release:
[2025-10-13 02:50:05] NAME="CentOS Linux"
[2025-10-13 02:50:05] VERSION="7 (Core)"
[2025-10-13 02:50:05] ID="centos"
[2025-10-13 02:50:05] ID_LIKE="rhel fedora"
[2025-10-13 02:50:05] VERSION_ID="7"
[2025-10-13 02:50:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:50:05] ANSI_COLOR="0;31"
[2025-10-13 02:50:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:50:05] HOME_URL="https://www.centos.org/"
[2025-10-13 02:50:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:50:05] 
[2025-10-13 02:50:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:50:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:50:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:50:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:50:05] 
[2025-10-13 02:50:05] 2025-10-13 06:49:33,296 | INFO     | ***************************************
[2025-10-13 02:50:05] 2025-10-13 06:49:33,799 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 02:50:05] 2025-10-13 06:49:33,816 | INFO     | sufficient remaining disk space (29495394304 B)
[2025-10-13 02:50:05] 2025-10-13 06:49:33,816 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:50:05] 2025-10-13 06:49:33,817 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:50:05] 2025-10-13 06:49:33,817 | INFO     | update_server=False
[2025-10-13 02:50:05] 2025-10-13 06:49:33,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:50:05] 2025-10-13 06:49:33,817 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:50:05] 2025-10-13 06:49:33,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:50:05] 2025-10-13 06:49:33,818 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:50:05] 2025-10-13 06:49:33,818 | INFO     | aborting loop
[2025-10-13 02:50:05] 2025-10-13 06:49:33,942 | INFO     | all data control threads have been joined
[2025-10-13 02:50:05] 2025-10-13 06:49:34,497 | INFO     | all payload control threads have been joined
[2025-10-13 02:50:05] 2025-10-13 06:49:34,726 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:50:05] 2025-10-13 06:49:34,823 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:34,823 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:34,824 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:34,892 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:34,944 | INFO     | [data] control thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:35,304 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:35,502 | INFO     | all job control threads have been joined
[2025-10-13 02:50:05] 2025-10-13 06:49:35,503 | INFO     | [payload] control thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:35,790 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:35,816 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:36,020 | INFO     | [job] validate thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:36,297 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:36,321 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:36,507 | INFO     | [job] control thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:36,732 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:37,824 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:44,381 | INFO     | job.realtimelogging is not enabled
[2025-10-13 02:50:05] 2025-10-13 06:49:45,383 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:50:05] 2025-10-13 06:49:59,468 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:50:05] 2025-10-13 06:50:00,461 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781663369024)>', '<ExcThread(monitor, started 139780742424320)>']
[2025-10-13 02:50:05] 2025-10-13 06:50:03,672 | INFO     | PID=9341 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 02:50:05] 2025-10-13 06:50:03,673 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:50:05] 2025-10-13 06:50:03,673 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:50:05] 2025-10-13 06:50:03,673 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:50:05] 2025-10-13 06:50:03,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:50:05] 2025-10-13 06:50:03,673 | INFO     | [monitor] control thread has ended
[2025-10-13 02:50:05] 2025-10-13 06:50:05,485 | INFO     | all workflow threads have been joined
[2025-10-13 02:50:05] 2025-10-13 06:50:05,485 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:50:05] 2025-10-13 06:50:05,485 | INFO     | traces error code: 0
[2025-10-13 02:50:05] 2025-10-13 06:50:05,486 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:50:05] 2025-10-13 06:50:05,572 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:50:05] 2025-10-13 06:50:05,576 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:50:05] 2025-10-13 06:50:05,580 [wrapper] pilotpid: 9341
[2025-10-13 02:50:05] 2025-10-13 06:50:05,583 [wrapper] Pilot exit status: 0
[2025-10-13 02:50:05] 2025-10-13 06:50:05,598 [wrapper] pandaids: 6841069725
[2025-10-13 02:50:05] 2025-10-13 06:50:05,638 [wrapper] cleanup supervisor_pilot 25110 9342
[2025-10-13 02:50:05] 2025-10-13 06:50:05,642 [wrapper] Test setup, not cleaning
[2025-10-13 02:50:05] 2025-10-13 06:50:05,646 [wrapper] apfmon messages muted
[2025-10-13 02:50:05] 2025-10-13 06:50:05,650 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:50:05] 2025-10-13 06:50:05,653 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:50:05]  *** Error codes and diagnostics ***
[2025-10-13 02:50:05]     "exeErrorCode": 0,
[2025-10-13 02:50:05]     "exeErrorDiag": "",
[2025-10-13 02:50:05]     "pilotErrorCode": 0,
[2025-10-13 02:50:05]     "pilotErrorDiag": "",
[2025-10-13 02:50:05]  *** Listing of results directory ***
[2025-10-13 02:50:05] total 407552
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:48 pilot3.tar.gz
[2025-10-13 02:50:05] -rwx------ 1 boincer umatlas     36292 Oct 12 21:02 runpilot2-wrapper.sh
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 21:02 queuedata.json
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas       100 Oct 13 01:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:50:05] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 01:36 run_atlas
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas       105 Oct 13 01:36 job.xml
[2025-10-13 02:50:05] -rw-r--r-- 2 boincer umatlas 219446352 Oct 13 01:36 EVNT.46676267._004717.pool.root.1
[2025-10-13 02:50:05] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:36 start_atlas.sh
[2025-10-13 02:50:05] drwxrwx--x 2 boincer umatlas      4096 Oct 13 01:36 shared
[2025-10-13 02:50:05] -rw-r--r-- 2 boincer umatlas    569681 Oct 13 01:36 input.tar.gz
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas         0 Oct 13 01:36 boinc_lockfile
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 01:36 pandaJob.out
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas    973230 Oct 13 01:36 agis_schedconf.cvmfs.json
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas   1560580 Oct 13 01:36 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:50:05] drwx------ 5 boincer umatlas      4096 Oct 13 01:36 pilot3
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 02:45 init_data.xml
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas 191956621 Oct 13 02:48 HITS.46676269._093765.pool.root.1
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas       530 Oct 13 02:49 boinc_task_state.xml
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas      1049 Oct 13 02:49 memory_monitor_summary.json
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas    384329 Oct 13 02:49 log.46676269._093765.job.log.tgz.1
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas      7850 Oct 13 02:49 heartbeat.json
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 02:49 boinc_mmap_file
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas        27 Oct 13 02:49 wrapper_checkpoint.txt
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas        95 Oct 13 02:50 pilot_heartbeat.json
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas      4817 Oct 13 02:50 pilotlog.txt
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas    634549 Oct 13 02:50 log.46676269._093765.job.log.1
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas       357 Oct 13 02:50 output.list
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas       620 Oct 13 02:50 runtime_log
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas   1034240 Oct 13 02:50 result.tar.gz
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas       658 Oct 13 02:50 toJNDmn8LS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0ImNDmhLreQn.diag
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas      8700 Oct 13 02:50 runtime_log.err
[2025-10-13 02:50:05] -rw-r--r-- 1 boincer umatlas     22687 Oct 13 02:50 stderr.txt
[2025-10-13 02:50:05] HITS file was successfully produced:
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas 191956621 Oct 13 02:48 shared/HITS.pool.root.1
[2025-10-13 02:50:05]  *** Contents of shared directory: ***
[2025-10-13 02:50:05] total 403356
[2025-10-13 02:50:05] -rw-r--r-- 2 boincer umatlas 219446352 Oct 13 01:36 ATLAS.root_0
[2025-10-13 02:50:05] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:36 start_atlas.sh
[2025-10-13 02:50:05] -rw-r--r-- 2 boincer umatlas    569681 Oct 13 01:36 input.tar.gz
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas 191956621 Oct 13 02:48 HITS.pool.root.1
[2025-10-13 02:50:05] -rw------- 1 boincer umatlas   1034240 Oct 13 02:50 result.tar.gz
02:50:07 (5653): run_atlas exited; CPU time 46013.530001
02:50:07 (5653): called boinc_finish(0)

</stderr_txt>
]]>

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