Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:23:09 (605599): wrapper (7.7.26015): starting
02:23:09 (605599): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 02:23:09] Arguments: --nthreads 8
[2025-10-13 02:23:09] Threads: 8
[2025-10-13 02:23:09] Checking for CVMFS
[2025-10-13 02:23:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:23:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:23:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:23:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:23:11] 2.13.2.0 2038924 69643 147880 151650 3 539 21092877 32503809 39636 16776704 0 458842591 99.751 311891774 34580 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 02:23:11] CVMFS is ok
[2025-10-13 02:23:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:23:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:23:11] Further information can be found at the LHC@home message board.
[2025-10-13 02:23:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:23:11] Checking for apptainer binary...
[2025-10-13 02:23:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:23:11] Running /usr/bin/apptainer --version
[2025-10-13 02:23:11] apptainer version 1.4.3-1.el9
[2025-10-13 02:23:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:23:11] c8-7-1.aglt2.org
[2025-10-13 02:23:11] apptainer works
[2025-10-13 02:23:11] Set ATHENA_PROC_NUMBER=8
[2025-10-13 02:23:11] Set ATHENA_CORE_NUMBER=8
[2025-10-13 02:23:11] Starting ATLAS job with PandaID=6840849995
[2025-10-13 02:23:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:59:35]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:59:35] 2025-10-13 07:58:33,873 | INFO     | job 6840849995 has finished - writing final server update
[2025-10-13 03:59:35] 2025-10-13 07:58:33,873 | INFO     | total number of processed events: 400 (read)
[2025-10-13 03:59:35] 2025-10-13 07:58:33,876 | INFO     | executing command: lscpu
[2025-10-13 03:59:35] 2025-10-13 07:58:34,140 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 03:59:35] 2025-10-13 07:58:34,861 | INFO     | number of running child processes to parent process 660564: 1
[2025-10-13 03:59:35] 2025-10-13 07:58:34,861 | INFO     | maximum number of monitored processes: 6
[2025-10-13 03:59:35] 2025-10-13 07:58:35,266 | INFO     | time since job start (5667s) is within the limit (172800.0s)
[2025-10-13 03:59:35] 2025-10-13 07:58:37,279 | INFO     | time since job start (5669s) is within the limit (172800.0s)
[2025-10-13 03:59:35] 2025-10-13 07:58:37,396 | INFO     | monitor loop #326: job 0:6840849995 is in state 'finished'
[2025-10-13 03:59:35] 2025-10-13 07:58:37,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:59:35] 2025-10-13 07:58:39,285 | INFO     | time since job start (5671s) is within the limit (172800.0s)
[2025-10-13 03:59:35] 2025-10-13 07:58:39,903 | INFO     | monitor loop #327: job 0:6840849995 is in state 'finished'
[2025-10-13 03:59:35] 2025-10-13 07:58:39,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:59:35] 2025-10-13 07:58:41,294 | INFO     | time since job start (5673s) is within the limit (172800.0s)
[2025-10-13 03:59:35] 2025-10-13 07:58:42,442 | INFO     | monitor loop #328: job 0:6840849995 is in state 'finished'
[2025-10-13 03:59:35] 2025-10-13 07:58:42,442 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:59:35] 2025-10-13 07:58:43,300 | INFO     | time since job start (5675s) is within the limit (172800.0s)
[2025-10-13 03:59:35] 2025-10-13 07:58:44,947 | INFO     | monitor loop #329: job 0:6840849995 is in state 'finished'
[2025-10-13 03:59:35] 2025-10-13 07:58:44,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:59:35] 2025-10-13 07:58:45,309 | INFO     | time since job start (5677s) is within the limit (172800.0s)
[2025-10-13 03:59:35] 2025-10-13 07:58:47,317 | INFO     | time since job start (5679s) is within the limit (172800.0s)
[2025-10-13 03:59:35] 2025-10-13 07:58:47,454 | INFO     | monitor loop #330: job 0:6840849995 is in state 'finished'
[2025-10-13 03:59:35] 2025-10-13 07:58:47,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:59:35] 2025-10-13 07:58:49,326 | INFO     | time since job start (5681s) is within the limit (172800.0s)
[2025-10-13 03:59:35] 2025-10-13 07:58:49,959 | INFO     | monitor loop #331: job 0:6840849995 is in state 'finished'
[2025-10-13 03:59:35] 2025-10-13 07:58:49,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:59:35] 2025-10-13 07:58:52,650 | INFO     | monitor loop #332: job 0:6840849995 is in state 'finished'
[2025-10-13 03:59:35] 2025-10-13 07:58:52,651 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:59:35] 2025-10-13 07:58:54,911 | INFO     | PID=619296 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 03:59:35] 2025-10-13 07:58:54,914 | INFO     | .. there are 56 such processes running
[2025-10-13 03:59:35] 2025-10-13 07:58:55,164 | INFO     | monitor loop #333: job 0:6840849995 is in state 'finished'
[2025-10-13 03:59:35] 2025-10-13 07:58:55,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:59:35] 2025-10-13 07:58:55,915 | INFO     | time since job start (5687s) is within the limit (172800.0s)
[2025-10-13 03:59:35] 2025-10-13 07:58:57,701 | INFO     | monitor loop #334: job 0:6840849995 is in state 'finished'
[2025-10-13 03:59:35] 2025-10-13 07:58:57,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:59:35] 2025-10-13 07:58:57,950 | INFO     | time since job start (5689s) is within the limit (172800.0s)
[2025-10-13 03:59:35] 2025-10-13 07:58:58,139 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 03:59:35] 2025-10-13 07:58:58,171 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3757.0877031249997
[2025-10-13 03:59:35] 2025-10-13 07:58:58,228 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6840849995/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:59:35] 2025-10-13 07:58:58,228 | INFO     | extracted standard info from prmon json
[2025-10-13 03:59:35] 2025-10-13 07:58:58,228 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:59:35] 2025-10-13 07:58:58,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:59:35] 2025-10-13 07:58:58,229 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:59:35] 2025-10-13 07:58:58,229 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:59:35] 2025-10-13 07:58:58,250 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:59:35] 2025-10-13 07:58:58,251 | INFO     | sum of square deviations: 183770190.70238054
[2025-10-13 03:59:35] 2025-10-13 07:58:58,251 | INFO     | sum of deviations: 2432846398.22619
[2025-10-13 03:59:35] 2025-10-13 07:58:58,251 | INFO     | mean x: 1760339591.5595238
[2025-10-13 03:59:35] 2025-10-13 07:58:58,251 | INFO     | mean y: 2382933.654761905
[2025-10-13 03:59:35] 2025-10-13 07:58:58,251 | INFO     | -- intersect: -23301918044.714268
[2025-10-13 03:59:35] 2025-10-13 07:58:58,251 | INFO     | intersect: -23301918044.714268
[2025-10-13 03:59:35] 2025-10-13 07:58:58,251 | INFO     | chi2: 0.030232604815609104
[2025-10-13 03:59:35] 2025-10-13 07:58:58,251 | INFO     | -- intersect: -23301918044.714268
[2025-10-13 03:59:35] 2025-10-13 07:58:58,251 | INFO     | current memory leak: 13.24 B/s (using 84 data points, chi2=0.03)
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | could have reported an average CPU frequency of 3753 MHz (7 samples)
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | ..............................
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | . Timing measurements:
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | . get job = 0 s
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | . initial setup = 3 s
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | . payload setup = 27 s
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | . stage-in = 0 s
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | . payload execution = 5571 s
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | . stage-out = 4 s
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | . log creation = 0 s
[2025-10-13 03:59:35] 2025-10-13 07:58:58,252 | INFO     | ..............................
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | 
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | job summary report
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | --------------------------------------------------
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | PanDA job id: 6840849995
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | task id: 46676269
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | errors: (none)
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | pilot state: finished 
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | transexitcode: 0
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | exeerrorcode: 0
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | exeerrordiag: 
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | exitcode: 0
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | exitmsg: OK
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | cpuconsumptiontime: 24108 s
[2025-10-13 03:59:35] 2025-10-13 07:58:58,536 | INFO     | nevents: 400
[2025-10-13 03:59:35] 2025-10-13 07:58:58,537 | INFO     | neventsw: 0
[2025-10-13 03:59:35] 2025-10-13 07:58:58,537 | INFO     | pid: 660564
[2025-10-13 03:59:35] 2025-10-13 07:58:58,537 | INFO     | pgrp: 660564
[2025-10-13 03:59:35] 2025-10-13 07:58:58,537 | INFO     | corecount: 8
[2025-10-13 03:59:35] 2025-10-13 07:58:58,537 | INFO     | event service: False
[2025-10-13 03:59:35] 2025-10-13 07:58:58,537 | INFO     | sizes: {0: 2348630, 1: 2348714, 2: 2348913, 13: 2348913, 23: 2348969, 27: 2349259, 34: 2349415, 5600: 2376148, 5601: 2376147, 5606: 2385201, 5609: 2385257, 5634: 2
[2025-10-13 03:59:35] 2025-10-13 07:58:58,537 | INFO     | --------------------------------------------------
[2025-10-13 03:59:35] 2025-10-13 07:58:58,537 | INFO     | 
[2025-10-13 03:59:35] 2025-10-13 07:58:58,537 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 03:59:35] 2025-10-13 07:58:58,720 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:59:35] 2025-10-13 07:58:58,721 | INFO     | job 6840849995 has completed (purged errors)
[2025-10-13 03:59:35] 2025-10-13 07:58:58,722 | INFO     | overall cleanup function is called
[2025-10-13 03:59:35] 2025-10-13 07:58:59,781 | INFO     | --- collectZombieJob: --- 10, [660564]
[2025-10-13 03:59:35] 2025-10-13 07:58:59,781 | INFO     | zombie collector waiting for pid 660564
[2025-10-13 03:59:35] 2025-10-13 07:58:59,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:59:35] 2025-10-13 07:58:59,781 | INFO     | collected zombie processes
[2025-10-13 03:59:35] 2025-10-13 07:58:59,781 | INFO     | will attempt to kill all subprocesses of pid=660564
[2025-10-13 03:59:35] 2025-10-13 07:59:01,669 | INFO     | process IDs to be killed: [660564] (in reverse order)
[2025-10-13 03:59:35] 2025-10-13 07:59:01,944 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:59:35] 2025-10-13 07:59:01,944 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:59:35] 2025-10-13 07:59:02,190 | INFO     | did not find any defunct processes belonging to 660564
[2025-10-13 03:59:35] 2025-10-13 07:59:02,844 | INFO     | did not find any defunct processes belonging to 660564
[2025-10-13 03:59:35] 2025-10-13 07:59:02,844 | INFO     | ready for new job
[2025-10-13 03:59:35] 2025-10-13 07:59:02,844 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:59:35] 2025-10-13 07:59:03,480 | INFO     | ***************************************
[2025-10-13 03:59:35] 2025-10-13 07:59:03,481 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:59:35] 2025-10-13 07:59:03,481 | INFO     | ***************************************
[2025-10-13 03:59:35] 2025-10-13 07:59:03,481 | INFO     | 
[2025-10-13 03:59:35] 2025-10-13 07:59:03,516 | INFO     | architecture information:
[2025-10-13 03:59:35] 2025-10-13 07:59:03,539 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:59:35] 2025-10-13 07:59:03,634 | INFO     | cat /etc/os-release:
[2025-10-13 03:59:35] NAME="CentOS Linux"
[2025-10-13 03:59:35] VERSION="7 (Core)"
[2025-10-13 03:59:35] ID="centos"
[2025-10-13 03:59:35] ID_LIKE="rhel fedora"
[2025-10-13 03:59:35] VERSION_ID="7"
[2025-10-13 03:59:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:59:35] ANSI_COLOR="0;31"
[2025-10-13 03:59:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:59:35] HOME_URL="https://www.centos.org/"
[2025-10-13 03:59:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:59:35] 
[2025-10-13 03:59:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:59:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:59:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:59:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:59:35] 
[2025-10-13 03:59:35] 2025-10-13 07:59:03,634 | INFO     | ***************************************
[2025-10-13 03:59:35] 2025-10-13 07:59:04,138 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 03:59:35] 2025-10-13 07:59:04,286 | INFO     | sufficient remaining disk space (92473917440 B)
[2025-10-13 03:59:35] 2025-10-13 07:59:04,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:59:35] 2025-10-13 07:59:04,286 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:59:35] 2025-10-13 07:59:04,287 | INFO     | update_server=False
[2025-10-13 03:59:35] 2025-10-13 07:59:04,287 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:59:35] 2025-10-13 07:59:04,287 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:59:35] 2025-10-13 07:59:04,287 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:59:35] 2025-10-13 07:59:04,287 | INFO     | aborting loop
[2025-10-13 03:59:35] 2025-10-13 07:59:04,294 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:59:35] 2025-10-13 07:59:04,340 | INFO     | all data control threads have been joined
[2025-10-13 03:59:35] 2025-10-13 07:59:05,292 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:05,293 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:05,293 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:05,322 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:05,346 | INFO     | [data] control thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:05,506 | INFO     | all payload control threads have been joined
[2025-10-13 03:59:35] 2025-10-13 07:59:05,620 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:05,651 | INFO     | all job control threads have been joined
[2025-10-13 03:59:35] 2025-10-13 07:59:05,711 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:05,756 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:05,894 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:06,042 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:06,301 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:06,512 | INFO     | [payload] control thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:06,603 | INFO     | [job] validate thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:06,603 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:06,657 | INFO     | [job] control thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:07,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:59:35] 2025-10-13 07:59:11,262 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:59:35] 2025-10-13 07:59:18,782 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:59:35] 2025-10-13 07:59:20,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140376561190720)>', '<ExcThread(monitor, started 140375746397952)>']
[2025-10-13 03:59:35] 2025-10-13 07:59:25,654 | INFO     | all workflow threads have been joined
[2025-10-13 03:59:35] 2025-10-13 07:59:25,654 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:59:35] 2025-10-13 07:59:25,654 | INFO     | traces error code: 0
[2025-10-13 03:59:35] 2025-10-13 07:59:25,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:59:35] 2025-10-13 07:59:33,382 | INFO     | PID=619296 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 03:59:35] 2025-10-13 07:59:33,382 | INFO     | .. there are 56 such processes running
[2025-10-13 03:59:35] 2025-10-13 07:59:33,382 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:59:35] 2025-10-13 07:59:33,382 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:59:35] 2025-10-13 07:59:33,382 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:59:35] 2025-10-13 07:59:33,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:59:35] 2025-10-13 07:59:33,382 | INFO     | [monitor] control thread has ended
[2025-10-13 03:59:35] 2025-10-13 07:59:33,899 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:59:35] 2025-10-13 07:59:33,914 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:59:35] 2025-10-13 07:59:33,937 [wrapper] pilotpid: 619296
[2025-10-13 03:59:35] 2025-10-13 07:59:33,972 [wrapper] Pilot exit status: 0
[2025-10-13 03:59:35] 2025-10-13 07:59:34,030 [wrapper] pandaids: 6840849995
[2025-10-13 03:59:35] 2025-10-13 07:59:34,260 [wrapper] cleanup supervisor_pilot 1210857 619297
[2025-10-13 03:59:35] 2025-10-13 07:59:34,288 [wrapper] Test setup, not cleaning
[2025-10-13 03:59:35] 2025-10-13 07:59:34,331 [wrapper] apfmon messages muted
[2025-10-13 03:59:35] 2025-10-13 07:59:34,340 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:59:35] 2025-10-13 07:59:34,374 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:59:35]  *** Error codes and diagnostics ***
[2025-10-13 03:59:35]     "exeErrorCode": 0,
[2025-10-13 03:59:35]     "exeErrorDiag": "",
[2025-10-13 03:59:35]     "pilotErrorCode": 0,
[2025-10-13 03:59:35]     "pilotErrorDiag": "",
[2025-10-13 03:59:35]  *** Listing of results directory ***
[2025-10-13 03:59:35] total 409332
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 18:03 queuedata.json
[2025-10-13 03:59:35] -rwx------. 1 boincer umatlas     36292 Oct 12 18:04 runpilot2-wrapper.sh
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas       100 Oct 13 02:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:59:35] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 02:23 run_atlas
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas       105 Oct 13 02:23 job.xml
[2025-10-13 03:59:35] -rw-r--r--. 2 boincer umatlas 219668695 Oct 13 02:23 EVNT.46676267._004055.pool.root.1
[2025-10-13 03:59:35] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 02:23 start_atlas.sh
[2025-10-13 03:59:35] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 02:23 shared
[2025-10-13 03:59:35] -rw-r--r--. 2 boincer umatlas    569683 Oct 13 02:23 input.tar.gz
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas         0 Oct 13 02:23 boinc_lockfile
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 02:23 pandaJob.out
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas    973230 Oct 13 02:24 agis_schedconf.cvmfs.json
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas   1560580 Oct 13 02:24 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:59:35] drwx------. 5 boincer umatlas      4096 Oct 13 02:24 pilot3
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas      7160 Oct 13 03:56 init_data.xml
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas 193500290 Oct 13 03:57 HITS.46676269._090587.pool.root.1
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas       530 Oct 13 03:57 boinc_task_state.xml
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas      1047 Oct 13 03:58 memory_monitor_summary.json
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas    330832 Oct 13 03:58 log.46676269._090587.job.log.tgz.1
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas        95 Oct 13 03:58 pilot_heartbeat.json
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas      7800 Oct 13 03:58 heartbeat.json
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas       822 Oct 13 03:59 pilotlog.txt
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 03:59 boinc_mmap_file
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas    710508 Oct 13 03:59 log.46676269._090587.job.log.1
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas       357 Oct 13 03:59 output.list
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas        27 Oct 13 03:59 wrapper_checkpoint.txt
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas       620 Oct 13 03:59 runtime_log
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas   1064960 Oct 13 03:59 result.tar.gz
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas       655 Oct 13 03:59 UxNLDmZMJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNnlNDmbdjSGn.diag
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas      8693 Oct 13 03:59 runtime_log.err
[2025-10-13 03:59:35] -rw-r--r--. 1 boincer umatlas     22370 Oct 13 03:59 stderr.txt
[2025-10-13 03:59:35] HITS file was successfully produced:
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas 193500290 Oct 13 03:57 shared/HITS.pool.root.1
[2025-10-13 03:59:35]  *** Contents of shared directory: ***
[2025-10-13 03:59:35] total 405116
[2025-10-13 03:59:35] -rw-r--r--. 2 boincer umatlas 219668695 Oct 13 02:23 ATLAS.root_0
[2025-10-13 03:59:35] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 02:23 start_atlas.sh
[2025-10-13 03:59:35] -rw-r--r--. 2 boincer umatlas    569683 Oct 13 02:23 input.tar.gz
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas 193500290 Oct 13 03:57 HITS.pool.root.1
[2025-10-13 03:59:35] -rw-------. 1 boincer umatlas   1064960 Oct 13 03:59 result.tar.gz
03:59:36 (605599): run_atlas exited; CPU time 24284.969848
03:59:36 (605599): called boinc_finish(0)

</stderr_txt>
]]>

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