Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:59:38 (8242): wrapper (7.7.26015): starting
01:59:38 (8242): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 01:59:38] Arguments: --nthreads 8
[2025-10-13 01:59:38] Threads: 8
[2025-10-13 01:59:38] Checking for CVMFS
[2025-10-13 01:59:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:59:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:59:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:59:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:59:38] 2.11.2.0 14221 53919 122736 151650 1 57 16547596 18432001 1833 130560 0 50673628 99.977 2295344 37519 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 01:59:38] CVMFS is ok
[2025-10-13 01:59:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:59:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:59:38] Further information can be found at the LHC@home message board.
[2025-10-13 01:59:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:59:38] Checking for apptainer binary...
[2025-10-13 01:59:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:59:38] Running /usr/bin/apptainer --version
[2025-10-13 01:59:38] apptainer version 1.3.2-1.el7
[2025-10-13 01:59:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:59:39] c-206-9.aglt2.org
[2025-10-13 01:59:39] apptainer works
[2025-10-13 01:59:39] Set ATHENA_PROC_NUMBER=8
[2025-10-13 01:59:39] Set ATHENA_CORE_NUMBER=8
[2025-10-13 01:59:39] Starting ATLAS job with PandaID=6841069137
[2025-10-13 01:59:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:58:12]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:58:12] 2025-10-13 08:57:49,765 | INFO     | time since job start (10680s) is within the limit (172800.0s)
[2025-10-13 04:58:12] 2025-10-13 08:57:50,961 | INFO     | monitor loop #778: job 0:6841069137 is in state 'finished'
[2025-10-13 04:58:12] 2025-10-13 08:57:50,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,648 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 04:58:12] 2025-10-13 08:57:51,662 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2522.2916666666665
[2025-10-13 04:58:12] 2025-10-13 08:57:51,669 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6841069137/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,670 | INFO     | extracted standard info from prmon json
[2025-10-13 04:58:12] 2025-10-13 08:57:51,670 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 04:58:12] 2025-10-13 08:57:51,670 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 04:58:12] 2025-10-13 08:57:51,670 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 04:58:12] 2025-10-13 08:57:51,671 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 04:58:12] 2025-10-13 08:57:51,683 | INFO     | fitting pss+swap vs Time
[2025-10-13 04:58:12] 2025-10-13 08:57:51,683 | INFO     | sum of square deviations: 1661798600.0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,684 | INFO     | sum of deviations: -2422665629.999989
[2025-10-13 04:58:12] 2025-10-13 08:57:51,684 | INFO     | mean x: 1760340521.0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,684 | INFO     | mean y: 2511865.72
[2025-10-13 04:58:12] 2025-10-13 08:57:51,685 | INFO     | -- intersect: 2568837578.909898
[2025-10-13 04:58:12] 2025-10-13 08:57:51,685 | INFO     | intersect: 2568837578.909898
[2025-10-13 04:58:12] 2025-10-13 08:57:51,685 | INFO     | chi2: 1.3781881348536191
[2025-10-13 04:58:12] 2025-10-13 08:57:51,685 | INFO     | sum of square deviations: 1523386702.5
[2025-10-13 04:58:12] 2025-10-13 08:57:51,686 | INFO     | sum of deviations: -2333932101.9999933
[2025-10-13 04:58:12] 2025-10-13 08:57:51,686 | INFO     | mean x: 1760340368.5
[2025-10-13 04:58:12] 2025-10-13 08:57:51,686 | INFO     | mean y: 2511965.5411764705
[2025-10-13 04:58:12] 2025-10-13 08:57:51,686 | INFO     | -- intersect: 2699473209.6863728
[2025-10-13 04:58:12] 2025-10-13 08:57:51,686 | INFO     | intersect: 2699473209.6863728
[2025-10-13 04:58:12] 2025-10-13 08:57:51,687 | INFO     | chi2: 1.37787450747746
[2025-10-13 04:58:12] 2025-10-13 08:57:51,687 | INFO     | current chi2=1.37787450747746 (change=0.022756499510303976 %)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,687 | INFO     | right removable region: 169
[2025-10-13 04:58:12] 2025-10-13 08:57:51,687 | INFO     | sum of square deviations: 1523386702.5
[2025-10-13 04:58:12] 2025-10-13 08:57:51,688 | INFO     | sum of deviations: -25232776940.999992
[2025-10-13 04:58:12] 2025-10-13 08:57:51,688 | INFO     | mean x: 1760340673.5
[2025-10-13 04:58:12] 2025-10-13 08:57:51,688 | INFO     | mean y: 2536643.411764706
[2025-10-13 04:58:12] 2025-10-13 08:57:51,688 | INFO     | -- intersect: 29160125771.43896
[2025-10-13 04:58:12] 2025-10-13 08:57:51,688 | INFO     | intersect: 29160125771.43896
[2025-10-13 04:58:12] 2025-10-13 08:57:51,689 | INFO     | chi2: 0.13431942925535376
[2025-10-13 04:58:12] 2025-10-13 08:57:51,689 | INFO     | current chi2=0.13431942925535376 (change=90.25391193999648 %)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,689 | INFO     | sum of square deviations: 1392881930.0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,690 | INFO     | sum of deviations: -22438089756.999992
[2025-10-13 04:58:12] 2025-10-13 08:57:51,690 | INFO     | mean x: 1760340826.0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,690 | INFO     | mean y: 2533329.5393939395
[2025-10-13 04:58:12] 2025-10-13 08:57:51,690 | INFO     | -- intersect: 28360059266.213367
[2025-10-13 04:58:12] 2025-10-13 08:57:51,690 | INFO     | intersect: 28360059266.213367
[2025-10-13 04:58:12] 2025-10-13 08:57:51,691 | INFO     | chi2: 0.12312730047310064
[2025-10-13 04:58:12] 2025-10-13 08:57:51,691 | INFO     | current chi2=0.12312730047310064 (change=8.332471962024078 %)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,691 | INFO     | left removable region: 20
[2025-10-13 04:58:12] 2025-10-13 08:57:51,691 | INFO     | sum of square deviations: 1025693650.0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,692 | INFO     | sum of deviations: -11568090813.0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,692 | INFO     | mean x: 1760340948.0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,692 | INFO     | mean y: 2520269.436241611
[2025-10-13 04:58:12] 2025-10-13 08:57:51,692 | INFO     | -- intersect: 19856190952.009453
[2025-10-13 04:58:12] 2025-10-13 08:57:51,692 | INFO     | intersect: 19856190952.009453
[2025-10-13 04:58:12] 2025-10-13 08:57:51,692 | INFO     | chi2: 0.08849141591285326
[2025-10-13 04:58:12] 2025-10-13 08:57:51,693 | INFO     | -- intersect: 19856190952.009453
[2025-10-13 04:58:12] 2025-10-13 08:57:51,693 | INFO     | current memory leak: -11.28 B/s (using 149 data points, chi2=0.09)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,693 | INFO     | could have reported an average CPU frequency of 2519 MHz (9 samples)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,693 | INFO     | ..............................
[2025-10-13 04:58:12] 2025-10-13 08:57:51,693 | INFO     | . Timing measurements:
[2025-10-13 04:58:12] 2025-10-13 08:57:51,693 | INFO     | . get job = 0 s
[2025-10-13 04:58:12] 2025-10-13 08:57:51,693 | INFO     | . initial setup = 2 s
[2025-10-13 04:58:12] 2025-10-13 08:57:51,694 | INFO     | . payload setup = 4 s
[2025-10-13 04:58:12] 2025-10-13 08:57:51,694 | INFO     | . stage-in = 0 s
[2025-10-13 04:58:12] 2025-10-13 08:57:51,694 | INFO     | . payload execution = 10650 s
[2025-10-13 04:58:12] 2025-10-13 08:57:51,694 | INFO     | . stage-out = 0 s
[2025-10-13 04:58:12] 2025-10-13 08:57:51,694 | INFO     | . log creation = 0 s
[2025-10-13 04:58:12] 2025-10-13 08:57:51,694 | INFO     | ..............................
[2025-10-13 04:58:12] 2025-10-13 08:57:51,775 | INFO     | time since job start (10682s) is within the limit (172800.0s)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,816 | INFO     | 
[2025-10-13 04:58:12] 2025-10-13 08:57:51,816 | INFO     | job summary report
[2025-10-13 04:58:12] 2025-10-13 08:57:51,816 | INFO     | --------------------------------------------------
[2025-10-13 04:58:12] 2025-10-13 08:57:51,816 | INFO     | PanDA job id: 6841069137
[2025-10-13 04:58:12] 2025-10-13 08:57:51,816 | INFO     | task id: 46676269
[2025-10-13 04:58:12] 2025-10-13 08:57:51,817 | INFO     | errors: (none)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,817 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 04:58:12] 2025-10-13 08:57:51,817 | INFO     | pilot state: finished 
[2025-10-13 04:58:12] 2025-10-13 08:57:51,817 | INFO     | transexitcode: 0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,817 | INFO     | exeerrorcode: 0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,817 | INFO     | exeerrordiag: 
[2025-10-13 04:58:12] 2025-10-13 08:57:51,817 | INFO     | exitcode: 0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,818 | INFO     | exitmsg: OK
[2025-10-13 04:58:12] 2025-10-13 08:57:51,818 | INFO     | cpuconsumptiontime: 80066 s
[2025-10-13 04:58:12] 2025-10-13 08:57:51,818 | INFO     | nevents: 400
[2025-10-13 04:58:12] 2025-10-13 08:57:51,818 | INFO     | neventsw: 0
[2025-10-13 04:58:12] 2025-10-13 08:57:51,818 | INFO     | pid: 18680
[2025-10-13 04:58:12] 2025-10-13 08:57:51,818 | INFO     | pgrp: 18680
[2025-10-13 04:58:12] 2025-10-13 08:57:51,819 | INFO     | corecount: 8
[2025-10-13 04:58:12] 2025-10-13 08:57:51,819 | INFO     | event service: False
[2025-10-13 04:58:12] 2025-10-13 08:57:51,819 | INFO     | sizes: {0: 2348685, 1: 2348884, 4: 2349146, 12: 2349174, 10658: 2378169, 10659: 2387167, 10661: 2387351, 10667: 2387609}
[2025-10-13 04:58:12] 2025-10-13 08:57:51,819 | INFO     | --------------------------------------------------
[2025-10-13 04:58:12] 2025-10-13 08:57:51,819 | INFO     | 
[2025-10-13 04:58:12] 2025-10-13 08:57:51,820 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 04:58:12] 2025-10-13 08:57:51,836 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,836 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,837 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,838 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,838 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:58:12] 2025-10-13 08:57:51,838 | INFO     | job 6841069137 has completed (purged errors)
[2025-10-13 04:58:12] 2025-10-13 08:57:51,838 | INFO     | overall cleanup function is called
[2025-10-13 04:58:12] 2025-10-13 08:57:52,845 | INFO     | --- collectZombieJob: --- 10, [18680]
[2025-10-13 04:58:12] 2025-10-13 08:57:52,845 | INFO     | zombie collector waiting for pid 18680
[2025-10-13 04:58:12] 2025-10-13 08:57:52,845 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:58:12] 2025-10-13 08:57:52,845 | INFO     | collected zombie processes
[2025-10-13 04:58:12] 2025-10-13 08:57:52,845 | INFO     | will attempt to kill all subprocesses of pid=18680
[2025-10-13 04:58:12] 2025-10-13 08:57:53,009 | INFO     | process IDs to be killed: [18680] (in reverse order)
[2025-10-13 04:58:12] 2025-10-13 08:57:53,065 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:58:12] 2025-10-13 08:57:53,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:58:12] 2025-10-13 08:57:53,071 | INFO     | did not find any defunct processes belonging to 18680
[2025-10-13 04:58:12] 2025-10-13 08:57:53,076 | INFO     | did not find any defunct processes belonging to 18680
[2025-10-13 04:58:12] 2025-10-13 08:57:53,076 | INFO     | ready for new job
[2025-10-13 04:58:12] 2025-10-13 08:57:53,076 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:58:12] 2025-10-13 08:57:53,078 | INFO     | ***************************************
[2025-10-13 04:58:12] 2025-10-13 08:57:53,078 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:58:12] 2025-10-13 08:57:53,079 | INFO     | ***************************************
[2025-10-13 04:58:12] 2025-10-13 08:57:53,079 | INFO     | 
[2025-10-13 04:58:12] 2025-10-13 08:57:53,080 | INFO     | architecture information:
[2025-10-13 04:58:12] 2025-10-13 08:57:53,080 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:58:12] 2025-10-13 08:57:53,094 | INFO     | cat /etc/os-release:
[2025-10-13 04:58:12] NAME="CentOS Linux"
[2025-10-13 04:58:12] VERSION="7 (Core)"
[2025-10-13 04:58:12] ID="centos"
[2025-10-13 04:58:12] ID_LIKE="rhel fedora"
[2025-10-13 04:58:12] VERSION_ID="7"
[2025-10-13 04:58:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:58:12] ANSI_COLOR="0;31"
[2025-10-13 04:58:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:58:12] HOME_URL="https://www.centos.org/"
[2025-10-13 04:58:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:58:12] 
[2025-10-13 04:58:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:58:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:58:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:58:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:58:12] 
[2025-10-13 04:58:12] 2025-10-13 08:57:53,094 | INFO     | ***************************************
[2025-10-13 04:58:12] 2025-10-13 08:57:53,597 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 04:58:12] 2025-10-13 08:57:53,612 | INFO     | sufficient remaining disk space (28336717824 B)
[2025-10-13 04:58:12] 2025-10-13 08:57:53,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:58:12] 2025-10-13 08:57:53,612 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:58:12] 2025-10-13 08:57:53,612 | INFO     | update_server=False
[2025-10-13 04:58:12] 2025-10-13 08:57:53,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:58:12] 2025-10-13 08:57:53,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:58:12] 2025-10-13 08:57:53,613 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 04:58:12] 2025-10-13 08:57:53,614 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:58:12] 2025-10-13 08:57:53,614 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:58:12] 2025-10-13 08:57:53,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:58:12] 2025-10-13 08:57:53,800 | INFO     | all data control threads have been joined
[2025-10-13 04:58:12] 2025-10-13 08:57:53,800 | INFO     | all payload control threads have been joined
[2025-10-13 04:58:12] 2025-10-13 08:57:53,901 | INFO     | all job control threads have been joined
[2025-10-13 04:58:12] 2025-10-13 08:57:54,473 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:58:12] 2025-10-13 08:57:54,474 | INFO     | aborting loop
[2025-10-13 04:58:12] 2025-10-13 08:57:54,618 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:54,619 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:54,806 | INFO     | [data] control thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:54,806 | INFO     | [payload] control thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:54,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:58:12] 2025-10-13 08:57:54,906 | INFO     | [job] control thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:55,261 | INFO     | [job] validate thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:55,261 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:55,463 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:55,481 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:55,763 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:55,938 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:55,939 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:55,943 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:56,038 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:57:56,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:58:12] 2025-10-13 08:57:56,886 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:58:00,844 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:58:12] 2025-10-13 08:58:06,273 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:58:12] 2025-10-13 08:58:07,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627727206208)>', '<ExcThread(monitor, started 140627144595200)>']
[2025-10-13 04:58:12] 2025-10-13 08:58:07,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:58:12] 2025-10-13 08:58:07,692 | INFO     | [monitor] control thread has ended
[2025-10-13 04:58:12] 2025-10-13 08:58:12,202 | INFO     | all workflow threads have been joined
[2025-10-13 04:58:12] 2025-10-13 08:58:12,202 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:58:12] 2025-10-13 08:58:12,202 | INFO     | traces error code: 0
[2025-10-13 04:58:12] 2025-10-13 08:58:12,203 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:58:12] 2025-10-13 08:58:12,332 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:58:12] 2025-10-13 08:58:12,335 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:58:12] 2025-10-13 08:58:12,337 [wrapper] pilotpid: 11909
[2025-10-13 04:58:12] 2025-10-13 08:58:12,340 [wrapper] Pilot exit status: 0
[2025-10-13 04:58:12] 2025-10-13 08:58:12,349 [wrapper] pandaids: 6841069137
[2025-10-13 04:58:12] 2025-10-13 08:58:12,388 [wrapper] cleanup supervisor_pilot 10944 11910
[2025-10-13 04:58:12] 2025-10-13 08:58:12,392 [wrapper] Test setup, not cleaning
[2025-10-13 04:58:12] 2025-10-13 08:58:12,394 [wrapper] apfmon messages muted
[2025-10-13 04:58:12] 2025-10-13 08:58:12,397 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:58:12] 2025-10-13 08:58:12,399 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:58:12]  *** Error codes and diagnostics ***
[2025-10-13 04:58:12]     "exeErrorCode": 0,
[2025-10-13 04:58:12]     "exeErrorDiag": "",
[2025-10-13 04:58:12]     "pilotErrorCode": 0,
[2025-10-13 04:58:12]     "pilotErrorDiag": "",
[2025-10-13 04:58:12]  *** Listing of results directory ***
[2025-10-13 04:58:12] total 414668
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:11 pilot3.tar.gz
[2025-10-13 04:58:12] -rwx------ 1 boincer umatlas     36292 Oct 12 20:42 runpilot2-wrapper.sh
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 20:42 queuedata.json
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas       100 Oct 13 01:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:58:12] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 01:59 run_atlas
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas       105 Oct 13 01:59 job.xml
[2025-10-13 04:58:12] -rw-r--r-- 2 boincer umatlas 222357721 Oct 13 01:59 EVNT.46676267._004700.pool.root.1
[2025-10-13 04:58:12] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:59 start_atlas.sh
[2025-10-13 04:58:12] drwxrwx--x 2 boincer umatlas      4096 Oct 13 01:59 shared
[2025-10-13 04:58:12] -rw-r--r-- 2 boincer umatlas    569679 Oct 13 01:59 input.tar.gz
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas         0 Oct 13 01:59 boinc_lockfile
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 01:59 pandaJob.out
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas    973230 Oct 13 01:59 agis_schedconf.cvmfs.json
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas   1560580 Oct 13 01:59 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:58:12] drwx------ 5 boincer umatlas      4096 Oct 13 01:59 pilot3
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas      5951 Oct 13 04:54 init_data.xml
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas 194512093 Oct 13 04:57 HITS.46676269._093346.pool.root.1
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas        95 Oct 13 04:57 pilot_heartbeat.json
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas       531 Oct 13 04:57 boinc_task_state.xml
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas      1054 Oct 13 04:57 memory_monitor_summary.json
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas    422137 Oct 13 04:57 log.46676269._093346.job.log.tgz.1
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas      7856 Oct 13 04:57 heartbeat.json
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 04:58 boinc_mmap_file
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas        28 Oct 13 04:58 wrapper_checkpoint.txt
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas      4552 Oct 13 04:58 pilotlog.txt
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas   1501364 Oct 13 04:58 log.46676269._093346.job.log.1
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas       357 Oct 13 04:58 output.list
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas       620 Oct 13 04:58 runtime_log
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas   1945600 Oct 13 04:58 result.tar.gz
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas      8699 Oct 13 04:58 runtime_log.err
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas       661 Oct 13 04:58 jG5NDmWpLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5OVMDm4ZW9Co.diag
[2025-10-13 04:58:12] -rw-r--r-- 1 boincer umatlas     21055 Oct 13 04:58 stderr.txt
[2025-10-13 04:58:12] HITS file was successfully produced:
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas 194512093 Oct 13 04:57 shared/HITS.pool.root.1
[2025-10-13 04:58:12]  *** Contents of shared directory: ***
[2025-10-13 04:58:12] total 409584
[2025-10-13 04:58:12] -rw-r--r-- 2 boincer umatlas 222357721 Oct 13 01:59 ATLAS.root_0
[2025-10-13 04:58:12] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:59 start_atlas.sh
[2025-10-13 04:58:12] -rw-r--r-- 2 boincer umatlas    569679 Oct 13 01:59 input.tar.gz
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas 194512093 Oct 13 04:57 HITS.pool.root.1
[2025-10-13 04:58:12] -rw------- 1 boincer umatlas   1945600 Oct 13 04:58 result.tar.gz
04:58:14 (8242): run_atlas exited; CPU time 80209.543607
04:58:14 (8242): called boinc_finish(0)

</stderr_txt>
]]>

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