Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 19:34:29 (14632): vboxwrapper version 26210
2025-10-13 19:34:29 (14632): BOINC client version: 8.2.4
2025-10-13 19:34:29 (14632): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-10-13 19:34:30 (14632): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 19:34:30 (14632): Create VM. (boinc_e06f4cc25d96fd05, slot#0)
2025-10-13 19:34:30 (14632): Setting Memory Size for VM. (4800MB)
2025-10-13 19:34:31 (14632): Setting CPU Count for VM. (8)
2025-10-13 19:34:31 (14632): Setting Chipset Options for VM.
2025-10-13 19:34:31 (14632): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 19:34:31 (14632): Setting Boot Options for VM.
2025-10-13 19:34:32 (14632): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 19:34:32 (14632): Enabling VM Network Access.
2025-10-13 19:34:32 (14632): Disabling USB Support for VM.
2025-10-13 19:34:33 (14632): Disabling COM Port Support for VM.
2025-10-13 19:34:33 (14632): Disabling LPT Port Support for VM.
2025-10-13 19:34:33 (14632): Disabling Audio Support for VM.
2025-10-13 19:34:33 (14632): Disabling Clipboard Support for VM.
2025-10-13 19:34:34 (14632): Disabling Drag and Drop Support for VM.
2025-10-13 19:34:34 (14632): Adding storage controller(s) to VM.
2025-10-13 19:34:34 (14632): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 19:34:35 (14632): Adding VirtualBox Guest Additions to VM.
2025-10-13 19:34:35 (14632): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 19:34:35 (14632): forwarding host port 49752 to guest port 80
2025-10-13 19:34:35 (14632): Enabling remote desktop for VM.
2025-10-13 19:34:36 (14632): Required extension pack not installed, remote desktop not enabled.
2025-10-13 19:34:36 (14632): Enabling shared directory for VM.
2025-10-13 19:34:36 (14632): Starting VM using VBoxManage interface. (boinc_e06f4cc25d96fd05, slot#0)
2025-10-13 19:34:39 (14632): Successfully started VM. (PID = '9708')
2025-10-13 19:34:39 (14632): Reporting VM Process ID to BOINC.
2025-10-13 19:34:39 (14632): Guest Log: BIOS: VirtualBox 6.1.50
2025-10-13 19:34:39 (14632): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 19:34:39 (14632): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 19:34:39 (14632): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 19:34:39 (14632): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 19:34:39 (14632): Detected: Web Application Enabled (http://localhost:49752)
2025-10-13 19:34:39 (14632): Preference change detected
2025-10-13 19:34:39 (14632): Setting CPU throttle for VM. (95%)
2025-10-13 19:34:39 (14632): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 19:34:41 (14632): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 19:34:41 (14632): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 19:34:43 (14632): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 19:34:43 (14632): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 19:34:43 (14632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 19:34:50 (14632): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 19:34:50 (14632): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-13 19:34:53 (14632): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 19:34:53 (14632): Guest Log: 00:00:00.000093 main     Log opened 2025-10-13T19:34:51.423321000Z
2025-10-13 19:34:53 (14632): Guest Log: 00:00:00.000148 main     OS Product: Linux
2025-10-13 19:34:53 (14632): Guest Log: 00:00:00.000165 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 19:34:53 (14632): Guest Log: 00:00:00.000177 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 19:34:53 (14632): Guest Log: 00:00:00.000189 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 19:34:53 (14632): Guest Log: 00:00:00.000189 main     Process ID: 1368
2025-10-13 19:34:53 (14632): Guest Log: 00:00:00.000189 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 19:34:53 (14632): Guest Log: 00:00:00.000563 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 19:34:53 (14632): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 19:34:53 (14632): Guest Log: [INFO] Mounting shared directory
2025-10-13 19:34:53 (14632): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 19:34:58 (14632): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 19:34:58 (14632): Guest Log: [INFO] Detected branch: prod
2025-10-13 19:34:58 (14632): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 19:34:58 (14632): Guest Log: Copying input files
2025-10-13 19:34:59 (14632): Guest Log: Copied input files into RunAtlas.
2025-10-13 19:34:59 (14632): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 19:34:59 (14632): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 19:34:59 (14632): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 19:34:59 (14632): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 19:35:03 (14632): Guest Log: 00:00:10.007132 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 588 601 760 000ns (GuestNow=1 760 344 502 822 772 000 ns GuestLast=1 760 384 091 424 532 000 ns fSetTimeLastLoop=true )
2025-10-13 19:35:08 (14632): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 19:35:08 (14632): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 19:35:08 (14632): Guest Log: 2.6.3.0 1643 0 30196 151654 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 19:35:08 (14632): Guest Log: copied the webapp to /var/www
2025-10-13 19:35:08 (14632): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-13 19:35:08 (14632): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-13 19:35:09 (14632): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 19:35:09 (14632): Guest Log:  *** Starting ATLAS job. (PandaID=6840849906 taskID=46676269) ***
2025-10-13 20:58:32 (14632): Guest Log:  *** Job finished ***
2025-10-13 20:58:32 (14632): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:11,751 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:11,751 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:23,655 | INFO     | [monitor] cgroup control has ended
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:24,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140347855468352)>', '<ExcThread(monitor, started 140347434850048)>']
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:25,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:25,238 | INFO     | [monitor] control thread has ended
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,307 | INFO     | all workflow threads have been joined
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,307 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,307 | INFO     | traces error code: 0
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,307 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,358 [wrapper] ==== pilot stdout END ====
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,362 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,365 [wrapper] pilotpid: 6083
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,369 [wrapper] Pilot exit status: 0
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,446 [wrapper] pandaids: 6840849906
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,470 [wrapper] cleanup supervisor_pilot   982 6084
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,474 [wrapper] Test setup, not cleaning
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,480 [wrapper] apfmon messages muted
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,484 [wrapper] ==== wrapper stdout END ====
2025-10-13 20:58:32 (14632): Guest Log: 2025-10-13 09:58:29,487 [wrapper] ==== wrapper stderr END ====
2025-10-13 20:58:32 (14632): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 20:58:32 (14632): Guest Log:     "exeErrorCode": 0,
2025-10-13 20:58:32 (14632): Guest Log:     "exeErrorDiag": "",
2025-10-13 20:58:32 (14632): Guest Log:     "pilotErrorCode": 0,
2025-10-13 20:58:32 (14632): Guest Log:     "pilotErrorDiag": "",
2025-10-13 20:58:32 (14632): Guest Log:  *** Listing of results directory ***
2025-10-13 20:58:32 (14632): Guest Log: total 193120
2025-10-13 20:58:32 (14632): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 21:56 queuedata.json
2025-10-13 20:58:32 (14632): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 21:57 pilot3.tar.gz
2025-10-13 20:58:32 (14632): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 21:58 runpilot2-wrapper.sh
2025-10-13 20:58:32 (14632): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 08:34 start_atlas.sh
2025-10-13 20:58:32 (14632): Guest Log: -rwxr-xr-x. 1 atlas atlas    569681 Oct 13 08:34 input.tar.gz
2025-10-13 20:58:32 (14632): Guest Log: -rwxr-xr-x. 1 atlas atlas      8625 Oct 13 08:34 init_data.xml
2025-10-13 20:58:32 (14632): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 08:34 EVNT.46676267._004847.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 20:58:32 (14632): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 13 08:35 pandaJob.out
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas    972857 Oct 13 08:36 agis_schedconf.cvmfs.json
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 08:36 agis_ddmendpoints.agis.ALL.json
2025-10-13 20:58:32 (14632): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 08:36 pilot3
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas 191895836 Oct 13 09:57 HITS.46676269._090498.pool.root.1
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas      1025 Oct 13 09:57 memory_monitor_summary.json
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas    335312 Oct 13 09:57 log.46676269._090498.job.log.tgz.1
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas      7789 Oct 13 09:57 heartbeat.json
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 09:58 pilot_heartbeat.json
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 13 09:58 pilotlog.txt
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas    679455 Oct 13 09:58 log.46676269._090498.job.log.1
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 09:58 output.list
2025-10-13 20:58:32 (14632): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 09:58 runtime_log
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas   1034240 Oct 13 09:58 result.tar.gz
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas       652 Oct 13 09:58 ZgyMDmeGJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdllNDmAaJj9n.diag
2025-10-13 20:58:32 (14632): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Oct 13 09:58 runtime_log.err
2025-10-13 20:58:32 (14632): Guest Log: Looking for outputfile HITS.46676269._090498.pool.root.1
2025-10-13 20:58:32 (14632): Guest Log: HITS file was successfully produced
2025-10-13 20:58:32 (14632): Guest Log: -rw-------. 1 atlas atlas 191895836 Oct 13 09:57 /home/atlas/RunAtlas/HITS.46676269._090498.pool.root.1
2025-10-13 20:58:32 (14632): Guest Log: Successfully finished the ATLAS job!
2025-10-13 20:58:32 (14632): Guest Log: Copying the results back to the shared directory!
2025-10-13 20:58:32 (14632): Guest Log:  *** Contents of shared directory: ***
2025-10-13 20:58:32 (14632): Guest Log: total 407344
2025-10-13 20:58:32 (14632): Guest Log: -rwxrwxrwx. 1 root root 223581089 Oct 13 08:34 ATLAS.root_0
2025-10-13 20:58:32 (14632): Guest Log: -rwxrwxrwx. 1 root root 191895836 Oct 13  2025 HITS.pool.root.1
2025-10-13 20:58:32 (14632): Guest Log: -rwxrwxrwx. 1 root root      8625 Oct 13 08:34 init_data.xml
2025-10-13 20:58:32 (14632): Guest Log: -rwxrwxrwx. 1 root root    569681 Oct 13 05:39 input.tar.gz
2025-10-13 20:58:32 (14632): Guest Log: -rwxrwxrwx. 1 root root   1034240 Oct 13  2025 result.tar.gz
2025-10-13 20:58:32 (14632): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 13 05:39 start_atlas.sh
2025-10-13 20:58:32 (14632): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 20:58:32 (14632): VM Completion File Detected.
2025-10-13 20:58:32 (14632): Powering off VM.
2025-10-13 20:58:33 (14632): Successfully stopped VM.
2025-10-13 20:58:33 (14632): Deregistering VM. (boinc_e06f4cc25d96fd05, slot#0)
2025-10-13 20:58:33 (14632): Removing network bandwidth throttle group from VM.
2025-10-13 20:58:33 (14632): Removing VM from VirtualBox.
2025-10-13 20:58:38 (14632): called boinc_finish(0)

</stderr_txt>
]]>

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