Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:54:48 (3397589): wrapper (7.7.26015): starting
15:54:48 (3397589): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 15:54:48] Arguments: --nthreads 3
[2025-10-13 15:54:48] Threads: 3
[2025-10-13 15:54:48] Checking for CVMFS
[2025-10-13 15:54:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:54:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:54:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:54:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:54:48] 2.9.2.0 1670520 5663 83084 151662 1 57 30270169 36864001 0 130560 0 4529750 99.991 200149 810 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 15:54:48] CVMFS is ok
[2025-10-13 15:54:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:54:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:54:48] Further information can be found at the LHC@home message board.
[2025-10-13 15:54:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:54:48] Checking for apptainer binary...
[2025-10-13 15:54:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:54:48] Running /usr/bin/apptainer --version
[2025-10-13 15:54:48] apptainer version 1.4.1-1.1
[2025-10-13 15:54:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:54:49] magicA246
[2025-10-13 15:54:49] apptainer works
[2025-10-13 15:54:49] Set ATHENA_PROC_NUMBER=3
[2025-10-13 15:54:49] Set ATHENA_CORE_NUMBER=3
[2025-10-13 15:54:49] Starting ATLAS job with PandaID=6841069235
[2025-10-13 15:54:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:15:07]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:15:07] 2025-10-13 15:14:24,924 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,924 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,924 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,924 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | job 6841069235 has completed (purged errors)
[2025-10-13 17:15:07] 2025-10-13 15:14:24,925 | INFO     | overall cleanup function is called
[2025-10-13 17:15:07] 2025-10-13 15:14:25,932 | INFO     | --- collectZombieJob: --- 10, [3407744]
[2025-10-13 17:15:07] 2025-10-13 15:14:25,932 | INFO     | zombie collector waiting for pid 3407744
[2025-10-13 17:15:07] 2025-10-13 15:14:25,932 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:15:07] 2025-10-13 15:14:25,932 | INFO     | collected zombie processes
[2025-10-13 17:15:07] 2025-10-13 15:14:25,932 | INFO     | will attempt to kill all subprocesses of pid=3407744
[2025-10-13 17:15:07] 2025-10-13 15:14:25,974 | INFO     | process IDs to be killed: [3407744] (in reverse order)
[2025-10-13 17:15:07] 2025-10-13 15:14:26,001 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:15:07] 2025-10-13 15:14:26,001 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:15:07] 2025-10-13 15:14:26,002 | INFO     | did not find any defunct processes belonging to 3407744
[2025-10-13 17:15:07] 2025-10-13 15:14:26,003 | INFO     | did not find any defunct processes belonging to 3407744
[2025-10-13 17:15:07] 2025-10-13 15:14:26,003 | INFO     | ready for new job
[2025-10-13 17:15:07] 2025-10-13 15:14:26,003 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:15:07] 2025-10-13 15:14:26,004 | INFO     | ***************************************
[2025-10-13 17:15:07] 2025-10-13 15:14:26,004 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:15:07] 2025-10-13 15:14:26,004 | INFO     | ***************************************
[2025-10-13 17:15:07] 2025-10-13 15:14:26,004 | INFO     | 
[2025-10-13 17:15:07] 2025-10-13 15:14:26,004 | INFO     | architecture information:
[2025-10-13 17:15:07] 2025-10-13 15:14:26,004 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:15:07] 2025-10-13 15:14:26,014 | INFO     | cat /etc/os-release:
[2025-10-13 17:15:07] NAME="CentOS Linux"
[2025-10-13 17:15:07] VERSION="7 (Core)"
[2025-10-13 17:15:07] ID="centos"
[2025-10-13 17:15:07] ID_LIKE="rhel fedora"
[2025-10-13 17:15:07] VERSION_ID="7"
[2025-10-13 17:15:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:15:07] ANSI_COLOR="0;31"
[2025-10-13 17:15:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:15:07] HOME_URL="https://www.centos.org/"
[2025-10-13 17:15:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:15:07] 
[2025-10-13 17:15:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:15:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:15:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:15:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:15:07] 
[2025-10-13 17:15:07] 2025-10-13 15:14:26,014 | INFO     | ***************************************
[2025-10-13 17:15:07] 2025-10-13 15:14:26,517 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 17:15:07] 2025-10-13 15:14:26,531 | INFO     | sufficient remaining disk space (375491919872 B)
[2025-10-13 17:15:07] 2025-10-13 15:14:26,531 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:15:07] 2025-10-13 15:14:26,531 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:15:07] 2025-10-13 15:14:26,531 | INFO     | update_server=False
[2025-10-13 17:15:07] 2025-10-13 15:14:26,531 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:15:07] 2025-10-13 15:14:26,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:15:07] 2025-10-13 15:14:26,531 | INFO     | aborting loop
[2025-10-13 17:15:07] 2025-10-13 15:14:26,532 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:15:07] 2025-10-13 15:14:26,532 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 17:15:07] 2025-10-13 15:14:26,532 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:15:07] 2025-10-13 15:14:26,532 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:15:07] 2025-10-13 15:14:26,532 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:15:07] 2025-10-13 15:14:26,630 | INFO     | all data control threads have been joined
[2025-10-13 17:15:07] 2025-10-13 15:14:27,175 | INFO     | all payload control threads have been joined
[2025-10-13 17:15:07] 2025-10-13 15:14:27,537 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:27,537 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:27,538 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:27,636 | INFO     | [data] control thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:27,639 | INFO     | all job control threads have been joined
[2025-10-13 17:15:07] 2025-10-13 15:14:27,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:15:07] 2025-10-13 15:14:27,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:15:07] 2025-10-13 15:14:28,181 | INFO     | [payload] control thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:28,246 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:28,607 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:28,645 | INFO     | [job] control thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:28,778 | INFO     | [job] validate thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:28,778 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:28,798 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:28,829 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:29,018 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:29,704 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:31,805 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:14:37,135 | INFO     | job.realtimelogging is not enabled
[2025-10-13 17:15:07] 2025-10-13 15:14:38,141 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:15:07] 2025-10-13 15:15:01,449 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:15:07] 2025-10-13 15:15:01,904 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139645133891392)>', '<ExcThread(monitor, started 139644259780352)>']
[2025-10-13 17:15:07] 2025-10-13 15:15:02,721 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:15:07] 2025-10-13 15:15:02,721 | INFO     | [monitor] control thread has ended
[2025-10-13 17:15:07] 2025-10-13 15:15:06,930 | INFO     | all workflow threads have been joined
[2025-10-13 17:15:07] 2025-10-13 15:15:06,930 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:15:07] 2025-10-13 15:15:06,931 | INFO     | traces error code: 0
[2025-10-13 17:15:07] 2025-10-13 15:15:06,931 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:15:07] 2025-10-13 15:15:06,987 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:15:07] 2025-10-13 15:15:06,989 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:15:07] 2025-10-13 15:15:06,992 [wrapper] pilotpid: 3401305
[2025-10-13 17:15:07] 2025-10-13 15:15:06,994 [wrapper] Pilot exit status: 0
[2025-10-13 17:15:07] 2025-10-13 15:15:07,002 [wrapper] pandaids: 6841069235
[2025-10-13 17:15:07] 2025-10-13 15:15:07,020 [wrapper] cleanup supervisor_pilot 3419908 3401306
[2025-10-13 17:15:07] 2025-10-13 15:15:07,023 [wrapper] Test setup, not cleaning
[2025-10-13 17:15:07] 2025-10-13 15:15:07,026 [wrapper] apfmon messages muted
[2025-10-13 17:15:07] 2025-10-13 15:15:07,028 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:15:07] 2025-10-13 15:15:07,031 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:15:07]  *** Error codes and diagnostics ***
[2025-10-13 17:15:07]     "exeErrorCode": 0,
[2025-10-13 17:15:07]     "exeErrorDiag": "",
[2025-10-13 17:15:07]     "pilotErrorCode": 0,
[2025-10-13 17:15:07]     "pilotErrorDiag": "",
[2025-10-13 17:15:07]  *** Listing of results directory ***
[2025-10-13 17:15:07] total 409720
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:11 pilot3.tar.gz
[2025-10-13 17:15:07] -rwx------ 1 boinc boinc     36292 Oct 13 02:43 runpilot2-wrapper.sh
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:43 queuedata.json
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:15:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:54 run_atlas
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:54 job.xml
[2025-10-13 17:15:07] -rw-r--r-- 2 boinc boinc 219903792 Oct 13 15:54 EVNT.46676267._004701.pool.root.1
[2025-10-13 17:15:07] -rw-r--r-- 2 boinc boinc    569675 Oct 13 15:54 input.tar.gz
[2025-10-13 17:15:07] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:54 start_atlas.sh
[2025-10-13 17:15:07] drwxrwx--x 2 boinc boinc      4096 Oct 13 15:54 shared
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:54 boinc_setup_complete
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc      6448 Oct 13 15:54 init_data.xml
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:54 boinc_lockfile
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc      2550 Oct 13 15:54 pandaJob.out
[2025-10-13 17:15:07] -rw------- 1 boinc boinc    972489 Oct 13 15:54 agis_schedconf.cvmfs.json
[2025-10-13 17:15:07] -rw------- 1 boinc boinc   1560580 Oct 13 15:54 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:15:07] drwx------ 5 boinc boinc      4096 Oct 13 15:54 pilot3
[2025-10-13 17:15:07] -rw------- 1 boinc boinc 193834469 Oct 13 17:13 HITS.46676269._093367.pool.root.1
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc       529 Oct 13 17:14 boinc_task_state.xml
[2025-10-13 17:15:07] -rw------- 1 boinc boinc      1027 Oct 13 17:14 memory_monitor_summary.json
[2025-10-13 17:15:07] -rw------- 1 boinc boinc    256338 Oct 13 17:14 log.46676269._093367.job.log.tgz.1
[2025-10-13 17:15:07] -rw------- 1 boinc boinc        95 Oct 13 17:14 pilot_heartbeat.json
[2025-10-13 17:15:07] -rw------- 1 boinc boinc      7754 Oct 13 17:14 heartbeat.json
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:15 boinc_mmap_file
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:15 wrapper_checkpoint.txt
[2025-10-13 17:15:07] -rw------- 1 boinc boinc      4628 Oct 13 17:15 pilotlog.txt
[2025-10-13 17:15:07] -rw------- 1 boinc boinc    702508 Oct 13 17:15 log.46676269._093367.job.log.1
[2025-10-13 17:15:07] -rw------- 1 boinc boinc       357 Oct 13 17:15 output.list
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:15 runtime_log
[2025-10-13 17:15:07] -rw------- 1 boinc boinc    983040 Oct 13 17:15 result.tar.gz
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc      8792 Oct 13 17:15 runtime_log.err
[2025-10-13 17:15:07] -rw------- 1 boinc boinc       661 Oct 13 17:15 PXRMDmUqLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQEmNDmkx4C6m.diag
[2025-10-13 17:15:07] -rw-r--r-- 1 boinc boinc     12849 Oct 13 17:15 stderr.txt
[2025-10-13 17:15:07] HITS file was successfully produced:
[2025-10-13 17:15:07] -rw------- 1 boinc boinc 193834469 Oct 13 17:13 shared/HITS.pool.root.1
[2025-10-13 17:15:07]  *** Contents of shared directory: ***
[2025-10-13 17:15:07] total 405588
[2025-10-13 17:15:07] -rw-r--r-- 2 boinc boinc 219903792 Oct 13 15:54 ATLAS.root_0
[2025-10-13 17:15:07] -rw-r--r-- 2 boinc boinc    569675 Oct 13 15:54 input.tar.gz
[2025-10-13 17:15:07] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:54 start_atlas.sh
[2025-10-13 17:15:07] -rw------- 1 boinc boinc 193834469 Oct 13 17:13 HITS.pool.root.1
[2025-10-13 17:15:07] -rw------- 1 boinc boinc    983040 Oct 13 17:15 result.tar.gz
17:15:08 (3397589): run_atlas exited; CPU time 13624.502704
17:15:08 (3397589): called boinc_finish(0)

</stderr_txt>
]]>

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