Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
17:48:29 (78430): wrapper (7.7.26015): starting
17:48:29 (78430): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 17:48:29] Arguments: --nthreads 12
[2025-10-13 17:48:29] Threads: 12
[2025-10-13 17:48:29] Checking for CVMFS
[2025-10-13 17:48:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:48:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:48:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:48:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:48:30] 2.13.2.0 14980 100 46372 151666 3 57 3356037 4096000 0 130560 0 122636 99.977 5566 262 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 17:48:30] CVMFS is ok
[2025-10-13 17:48:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:48:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:48:30] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 17:48:30] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 17:48:30] Further information can be found at the LHC@home message board.
[2025-10-13 17:48:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:48:30] Checking for apptainer binary...
[2025-10-13 17:48:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:48:30] Running /usr/bin/apptainer --version
[2025-10-13 17:48:30] apptainer version 1.4.3
[2025-10-13 17:48:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:48:30] pc2
[2025-10-13 17:48:30] apptainer works
[2025-10-13 17:48:30] Set ATHENA_PROC_NUMBER=12
[2025-10-13 17:48:30] Set ATHENA_CORE_NUMBER=12
[2025-10-13 17:48:30] Starting ATLAS job with PandaID=6841069092
[2025-10-13 17:48:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:34:49]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:34:49]  lfn=log.46676269._093301.job.log.tgz.1
[2025-10-13 18:34:49]  mtime=0
[2025-10-13 18:34:49]  protocol_id=None
[2025-10-13 18:34:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 18:34:49]  replicas=None
[2025-10-13 18:34:49]  scope=mc23_13p6TeV
[2025-10-13 18:34:49]  status=None
[2025-10-13 18:34:49]  status_code=0
[2025-10-13 18:34:49]  storage_token=
[2025-10-13 18:34:49]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6841069092/log.46676269._093301.job.log.tgz.1
[2025-10-13 18:34:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/56/log.46676269._093301.job.log.tgz.1
[2025-10-13 18:34:49]  workdir=None
[2025-10-13 18:34:49] ]
[2025-10-13 18:34:49] 2025-10-13 16:34:06,410 | INFO     | transferring file log.46676269._093301.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6841069092/log.46676269._093301.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 18:34:49] 2025-10-13 16:34:06,410 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6841069092/log.46676269._093301.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._093301.job
[2025-10-13 18:34:49] 2025-10-13 16:34:06,418 | INFO     | adding to output.list: log.46676269._093301.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/56/log.46676269._093301.job.log.tg
[2025-10-13 18:34:49] 2025-10-13 16:34:06,418 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 18:34:49] 2025-10-13 16:34:06,418 | INFO     | summary of transferred files:
[2025-10-13 18:34:49] 2025-10-13 16:34:06,418 | INFO     |  -- lfn=log.46676269._093301.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 18:34:49] 2025-10-13 16:34:06,418 | INFO     | stage-out finished correctly
[2025-10-13 18:34:49] 2025-10-13 16:34:06,447 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 18:34:49] 2025-10-13 16:34:06,474 | INFO     | job 6841069092 has state=finished
[2025-10-13 18:34:49] 2025-10-13 16:34:06,474 | INFO     | preparing for final server update for job 6841069092 in state='finished'
[2025-10-13 18:34:49] 2025-10-13 16:34:06,475 | INFO     | this job has now completed (state=finished)
[2025-10-13 18:34:49] 2025-10-13 16:34:06,475 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 18:34:49] 2025-10-13 16:34:06,475 | INFO     | log transfer has been attempted: DONE
[2025-10-13 18:34:49] 2025-10-13 16:34:06,475 | INFO     | job 6841069092 has finished - writing final server update
[2025-10-13 18:34:49] 2025-10-13 16:34:06,475 | INFO     | total number of processed events: 400 (read)
[2025-10-13 18:34:49] 2025-10-13 16:34:06,475 | INFO     | executing command: lscpu
[2025-10-13 18:34:49] 2025-10-13 16:34:06,482 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 18:34:49] 2025-10-13 16:34:08,174 | INFO     | time since job start (2728s) is within the limit (172800.0s)
[2025-10-13 18:34:49] 2025-10-13 16:34:09,330 | WARNING  | process 88599 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 18:34:49] 2025-10-13 16:34:09,331 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6841069092/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:34:49] 2025-10-13 16:34:09,364 | INFO     | number of running child processes to parent process 88599: 1
[2025-10-13 18:34:49] 2025-10-13 16:34:09,364 | INFO     | maximum number of monitored processes: 6
[2025-10-13 18:34:49] 2025-10-13 16:34:10,179 | INFO     | time since job start (2730s) is within the limit (172800.0s)
[2025-10-13 18:34:49] 2025-10-13 16:34:11,231 | INFO     | PID=82161 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 18:34:49] 2025-10-13 16:34:11,421 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 18:34:49] 2025-10-13 16:34:11,421 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3554.1132500000003
[2025-10-13 18:34:49] 2025-10-13 16:34:11,422 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6841069092/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:34:49] 2025-10-13 16:34:11,423 | INFO     | extracted standard info from prmon json
[2025-10-13 18:34:49] 2025-10-13 16:34:11,423 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 18:34:49] 2025-10-13 16:34:11,423 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 18:34:49] 2025-10-13 16:34:11,423 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 18:34:49] 2025-10-13 16:34:11,423 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:34:49] 2025-10-13 16:34:11,423 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:34:49] 2025-10-13 16:34:11,423 | INFO     | sum of square deviations: 17003109.5
[2025-10-13 18:34:49] 2025-10-13 16:34:11,423 | INFO     | sum of deviations: -4538188909.500001
[2025-10-13 18:34:49] 2025-10-13 16:34:11,423 | INFO     | mean x: 1760371974.5
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | mean y: 2905046.710526316
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | -- intersect: 469852291788.0309
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | intersect: 469852291788.0309
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | chi2: 0.05401762673503446
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | -- intersect: 469852291788.0309
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | current memory leak: -266.90 B/s (using 38 data points, chi2=0.05)
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | could have reported an average CPU frequency of 3510 MHz (5 samples)
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | ..............................
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | . Timing measurements:
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | . get job = 0 s
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | . initial setup = 3 s
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | . payload setup = 4 s
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | . stage-in = 0 s
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | . payload execution = 2703 s
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | . stage-out = 0 s
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | . log creation = 0 s
[2025-10-13 18:34:49] 2025-10-13 16:34:11,424 | INFO     | ..............................
[2025-10-13 18:34:49] 2025-10-13 16:34:11,456 | INFO     | 
[2025-10-13 18:34:49] 2025-10-13 16:34:11,456 | INFO     | job summary report
[2025-10-13 18:34:49] 2025-10-13 16:34:11,456 | INFO     | --------------------------------------------------
[2025-10-13 18:34:49] 2025-10-13 16:34:11,456 | INFO     | PanDA job id: 6841069092
[2025-10-13 18:34:49] 2025-10-13 16:34:11,456 | INFO     | task id: 46676269
[2025-10-13 18:34:49] 2025-10-13 16:34:11,456 | INFO     | errors: (none)
[2025-10-13 18:34:49] 2025-10-13 16:34:11,456 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | pilot state: finished 
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | transexitcode: 0
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | exeerrorcode: 0
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | exeerrordiag: 
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | exitcode: 0
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | exitmsg: OK
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | cpuconsumptiontime: 27194 s
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | nevents: 400
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | neventsw: 0
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | pid: 88599
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | pgrp: 88599
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | corecount: 12
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | event service: False
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | sizes: {0: 2348850, 3: 2349112, 11: 2349140, 2710: 2374417, 2711: 2374416, 2712: 2383654, 2717: 2383824}
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | --------------------------------------------------
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | 
[2025-10-13 18:34:49] 2025-10-13 16:34:11,457 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,476 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,477 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:34:49] 2025-10-13 16:34:11,477 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,477 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:34:49] 2025-10-13 16:34:11,477 | INFO     | job 6841069092 has completed (purged errors)
[2025-10-13 18:34:49] 2025-10-13 16:34:11,477 | INFO     | overall cleanup function is called
[2025-10-13 18:34:49] 2025-10-13 16:34:12,483 | INFO     | --- collectZombieJob: --- 10, [88599]
[2025-10-13 18:34:49] 2025-10-13 16:34:12,484 | INFO     | zombie collector waiting for pid 88599
[2025-10-13 18:34:49] 2025-10-13 16:34:12,484 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:34:49] 2025-10-13 16:34:12,484 | INFO     | collected zombie processes
[2025-10-13 18:34:49] 2025-10-13 16:34:12,484 | INFO     | will attempt to kill all subprocesses of pid=88599
[2025-10-13 18:34:49] 2025-10-13 16:34:12,520 | INFO     | process IDs to be killed: [88599] (in reverse order)
[2025-10-13 18:34:49] 2025-10-13 16:34:12,543 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:34:49] 2025-10-13 16:34:12,543 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:34:49] 2025-10-13 16:34:12,545 | INFO     | did not find any defunct processes belonging to 88599
[2025-10-13 18:34:49] 2025-10-13 16:34:12,546 | INFO     | did not find any defunct processes belonging to 88599
[2025-10-13 18:34:49] 2025-10-13 16:34:12,546 | INFO     | ready for new job
[2025-10-13 18:34:49] 2025-10-13 16:34:12,546 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:34:49] 2025-10-13 16:34:12,547 | INFO     | ***************************************
[2025-10-13 18:34:49] 2025-10-13 16:34:12,547 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:34:49] 2025-10-13 16:34:12,547 | INFO     | ***************************************
[2025-10-13 18:34:49] 2025-10-13 16:34:12,547 | INFO     | 
[2025-10-13 18:34:49] 2025-10-13 16:34:12,547 | INFO     | architecture information:
[2025-10-13 18:34:49] 2025-10-13 16:34:12,551 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:34:49] 2025-10-13 16:34:12,559 | INFO     | cat /etc/os-release:
[2025-10-13 18:34:49] NAME="CentOS Linux"
[2025-10-13 18:34:49] VERSION="7 (Core)"
[2025-10-13 18:34:49] ID="centos"
[2025-10-13 18:34:49] ID_LIKE="rhel fedora"
[2025-10-13 18:34:49] VERSION_ID="7"
[2025-10-13 18:34:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:34:49] ANSI_COLOR="0;31"
[2025-10-13 18:34:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:34:49] HOME_URL="https://www.centos.org/"
[2025-10-13 18:34:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:34:49] 
[2025-10-13 18:34:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:34:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:34:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:34:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:34:49] 
[2025-10-13 18:34:49] 2025-10-13 16:34:12,559 | INFO     | ***************************************
[2025-10-13 18:34:49] 2025-10-13 16:34:13,062 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 18:34:49] 2025-10-13 16:34:13,070 | INFO     | sufficient remaining disk space (27270316032 B)
[2025-10-13 18:34:49] 2025-10-13 16:34:13,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:34:49] 2025-10-13 16:34:13,071 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:34:49] 2025-10-13 16:34:13,071 | INFO     | update_server=False
[2025-10-13 18:34:49] 2025-10-13 16:34:13,071 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:34:49] 2025-10-13 16:34:13,071 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:34:49] 2025-10-13 16:34:13,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:34:49] 2025-10-13 16:34:13,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:34:49] 2025-10-13 16:34:13,071 | INFO     | aborting loop
[2025-10-13 18:34:49] 2025-10-13 16:34:13,738 | INFO     | all data control threads have been joined
[2025-10-13 18:34:49] 2025-10-13 16:34:14,076 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:14,076 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:14,077 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:14,188 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:14,294 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:14,310 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:14,464 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:34:49] 2025-10-13 16:34:14,508 | INFO     | all payload control threads have been joined
[2025-10-13 18:34:49] 2025-10-13 16:34:14,682 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:14,709 | INFO     | all job control threads have been joined
[2025-10-13 18:34:49] 2025-10-13 16:34:14,743 | INFO     | [data] control thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:15,286 | INFO     | [job] validate thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:15,309 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:15,503 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:15,513 | INFO     | [payload] control thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:15,617 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:15,714 | INFO     | [job] control thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:16,469 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:17,077 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:34:49] 2025-10-13 16:34:43,329 | INFO     | PID=82161 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 18:34:49] 2025-10-13 16:34:43,329 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:34:49] 2025-10-13 16:34:43,329 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:34:49] 2025-10-13 16:34:43,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:34:49] 2025-10-13 16:34:43,992 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:34:49] 2025-10-13 16:34:44,212 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139839642785600)>', '<ExcThread(monitor, started 139838481225472)>']
[2025-10-13 18:34:49] 2025-10-13 16:34:44,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:34:49] 2025-10-13 16:34:44,335 | INFO     | [monitor] control thread has ended
[2025-10-13 18:34:49] 2025-10-13 16:34:49,217 | INFO     | all workflow threads have been joined
[2025-10-13 18:34:49] 2025-10-13 16:34:49,217 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:34:49] 2025-10-13 16:34:49,217 | INFO     | traces error code: 0
[2025-10-13 18:34:49] 2025-10-13 16:34:49,217 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:34:49] 2025-10-13 16:34:49,267 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:34:49] 2025-10-13 16:34:49,268 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:34:49] 2025-10-13 16:34:49,269 [wrapper] pilotpid: 82161
[2025-10-13 18:34:49] 2025-10-13 16:34:49,270 [wrapper] Pilot exit status: 0
[2025-10-13 18:34:49] 2025-10-13 16:34:49,277 [wrapper] pandaids: 6841069092
[2025-10-13 18:34:49] 2025-10-13 16:34:49,287 [wrapper] cleanup supervisor_pilot  105151 82162
[2025-10-13 18:34:49] 2025-10-13 16:34:49,288 [wrapper] Test setup, not cleaning
[2025-10-13 18:34:49] 2025-10-13 16:34:49,289 [wrapper] apfmon messages muted
[2025-10-13 18:34:49] 2025-10-13 16:34:49,290 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:34:49] 2025-10-13 16:34:49,291 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:34:49]  *** Error codes and diagnostics ***
[2025-10-13 18:34:49]     "exeErrorCode": 0,
[2025-10-13 18:34:49]     "exeErrorDiag": "",
[2025-10-13 18:34:49]     "pilotErrorCode": 0,
[2025-10-13 18:34:49]     "pilotErrorDiag": "",
[2025-10-13 18:34:49]  *** Listing of results directory ***
[2025-10-13 18:34:49] total 409800
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:11 pilot3.tar.gz
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:37 queuedata.json
[2025-10-13 18:34:49] -rwx------ 1 boinc boinc     36292 Oct 13 02:38 runpilot2-wrapper.sh
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:34:49] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:48 run_atlas
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:48 job.xml
[2025-10-13 18:34:49] -rw-r--r-- 2 boinc boinc 221141936 Oct 13 17:48 EVNT.46676267._004699.pool.root.1
[2025-10-13 18:34:49] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:48 shared
[2025-10-13 18:34:49] -rw-r--r-- 2 boinc boinc    569677 Oct 13 17:48 input.tar.gz
[2025-10-13 18:34:49] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:48 start_atlas.sh
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc      6562 Oct 13 17:48 init_data.xml
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:48 boinc_setup_complete
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:48 boinc_lockfile
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc      2546 Oct 13 17:48 pandaJob.out
[2025-10-13 18:34:49] -rw------- 1 boinc boinc    972783 Oct 13 17:48 agis_schedconf.cvmfs.json
[2025-10-13 18:34:49] -rw------- 1 boinc boinc   1560580 Oct 13 17:48 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:34:49] drwx------ 5 boinc boinc      4096 Oct 13 17:48 pilot3
[2025-10-13 18:34:49] -rw------- 1 boinc boinc 193072545 Oct 13 18:33 HITS.46676269._093301.pool.root.1
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc       529 Oct 13 18:33 boinc_task_state.xml
[2025-10-13 18:34:49] -rw------- 1 boinc boinc      1027 Oct 13 18:34 memory_monitor_summary.json
[2025-10-13 18:34:49] -rw------- 1 boinc boinc        95 Oct 13 18:34 pilot_heartbeat.json
[2025-10-13 18:34:49] -rw------- 1 boinc boinc    342595 Oct 13 18:34 log.46676269._093301.job.log.tgz.1
[2025-10-13 18:34:49] -rw------- 1 boinc boinc      7778 Oct 13 18:34 heartbeat.json
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc        27 Oct 13 18:34 wrapper_checkpoint.txt
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc      8192 Oct 13 18:34 boinc_mmap_file
[2025-10-13 18:34:49] -rw------- 1 boinc boinc      4746 Oct 13 18:34 pilotlog.txt
[2025-10-13 18:34:49] -rw------- 1 boinc boinc    420295 Oct 13 18:34 log.46676269._093301.job.log.1
[2025-10-13 18:34:49] -rw------- 1 boinc boinc       357 Oct 13 18:34 output.list
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc       620 Oct 13 18:34 runtime_log
[2025-10-13 18:34:49] -rw------- 1 boinc boinc    778240 Oct 13 18:34 result.tar.gz
[2025-10-13 18:34:49] -rw------- 1 boinc boinc       637 Oct 13 18:34 SnELDm3kLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIDmNDmLuiNXn.diag
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc      8636 Oct 13 18:34 runtime_log.err
[2025-10-13 18:34:49] -rw-r--r-- 1 boinc boinc     21890 Oct 13 18:34 stderr.txt
[2025-10-13 18:34:49] HITS file was successfully produced:
[2025-10-13 18:34:49] -rw------- 1 boinc boinc 193072545 Oct 13 18:33 shared/HITS.pool.root.1
[2025-10-13 18:34:49]  *** Contents of shared directory: ***
[2025-10-13 18:34:49] total 405852
[2025-10-13 18:34:49] -rw-r--r-- 2 boinc boinc 221141936 Oct 13 17:48 ATLAS.root_0
[2025-10-13 18:34:49] -rw-r--r-- 2 boinc boinc    569677 Oct 13 17:48 input.tar.gz
[2025-10-13 18:34:49] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:48 start_atlas.sh
[2025-10-13 18:34:49] -rw------- 1 boinc boinc 193072545 Oct 13 18:33 HITS.pool.root.1
[2025-10-13 18:34:49] -rw------- 1 boinc boinc    778240 Oct 13 18:34 result.tar.gz
18:34:50 (78430): run_atlas exited; CPU time 27196.940972
18:34:50 (78430): called boinc_finish(0)

</stderr_txt>
]]>

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