Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:29:06 (3507422): wrapper (7.7.26015): starting
17:29:06 (3507422): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 17:29:06] Arguments: --nthreads 3
[2025-10-13 17:29:06] Threads: 3
[2025-10-13 17:29:06] Checking for CVMFS
[2025-10-13 17:29:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:29:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:29:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:29:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:29:07] 2.9.2.0 3205981 1048 61644 151666 2 57 30788162 36864001 0 130560 0 781468 99.990 37328 708 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 17:29:07] CVMFS is ok
[2025-10-13 17:29:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:29:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:29:07] Further information can be found at the LHC@home message board.
[2025-10-13 17:29:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:29:07] Checking for apptainer binary...
[2025-10-13 17:29:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:29:07] Running /usr/bin/apptainer --version
[2025-10-13 17:29:07] apptainer version 1.4.1-1.1
[2025-10-13 17:29:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:29:07] thA335
[2025-10-13 17:29:07] apptainer works
[2025-10-13 17:29:07] Set ATHENA_PROC_NUMBER=3
[2025-10-13 17:29:07] Set ATHENA_CORE_NUMBER=3
[2025-10-13 17:29:07] Starting ATLAS job with PandaID=6841069021
[2025-10-13 17:29:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 19:05:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 19:05:32] 2025-10-13 17:04:45,721 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 19:05:32] 2025-10-13 17:04:45,721 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 19:05:32] 2025-10-13 17:04:45,722 | INFO     | job 6841069021 has completed (purged errors)
[2025-10-13 19:05:32] 2025-10-13 17:04:45,722 | INFO     | overall cleanup function is called
[2025-10-13 19:05:32] 2025-10-13 17:04:46,728 | INFO     | --- collectZombieJob: --- 10, [3517595]
[2025-10-13 19:05:32] 2025-10-13 17:04:46,728 | INFO     | zombie collector waiting for pid 3517595
[2025-10-13 19:05:32] 2025-10-13 17:04:46,728 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 19:05:32] 2025-10-13 17:04:46,729 | INFO     | collected zombie processes
[2025-10-13 19:05:32] 2025-10-13 17:04:46,729 | INFO     | will attempt to kill all subprocesses of pid=3517595
[2025-10-13 19:05:32] 2025-10-13 17:04:46,768 | INFO     | process IDs to be killed: [3517595] (in reverse order)
[2025-10-13 19:05:32] 2025-10-13 17:04:46,794 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 19:05:32] 2025-10-13 17:04:46,795 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 19:05:32] 2025-10-13 17:04:46,796 | INFO     | did not find any defunct processes belonging to 3517595
[2025-10-13 19:05:32] 2025-10-13 17:04:46,797 | INFO     | did not find any defunct processes belonging to 3517595
[2025-10-13 19:05:32] 2025-10-13 17:04:46,797 | INFO     | ready for new job
[2025-10-13 19:05:32] 2025-10-13 17:04:46,797 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 19:05:32] 2025-10-13 17:04:46,797 | INFO     | ***************************************
[2025-10-13 19:05:32] 2025-10-13 17:04:46,797 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 19:05:32] 2025-10-13 17:04:46,798 | INFO     | ***************************************
[2025-10-13 19:05:32] 2025-10-13 17:04:46,798 | INFO     | 
[2025-10-13 19:05:32] 2025-10-13 17:04:46,798 | INFO     | architecture information:
[2025-10-13 19:05:32] 2025-10-13 17:04:46,798 | INFO     | executing command: cat /etc/os-release
[2025-10-13 19:05:32] 2025-10-13 17:04:46,807 | INFO     | cat /etc/os-release:
[2025-10-13 19:05:32] NAME="CentOS Linux"
[2025-10-13 19:05:32] VERSION="7 (Core)"
[2025-10-13 19:05:32] ID="centos"
[2025-10-13 19:05:32] ID_LIKE="rhel fedora"
[2025-10-13 19:05:32] VERSION_ID="7"
[2025-10-13 19:05:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 19:05:32] ANSI_COLOR="0;31"
[2025-10-13 19:05:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 19:05:32] HOME_URL="https://www.centos.org/"
[2025-10-13 19:05:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 19:05:32] 
[2025-10-13 19:05:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 19:05:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 19:05:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 19:05:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 19:05:32] 
[2025-10-13 19:05:32] 2025-10-13 17:04:46,807 | INFO     | ***************************************
[2025-10-13 19:05:32] 2025-10-13 17:04:47,311 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 19:05:32] 2025-10-13 17:04:47,324 | INFO     | sufficient remaining disk space (831686443008 B)
[2025-10-13 19:05:32] 2025-10-13 17:04:47,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 19:05:32] 2025-10-13 17:04:47,325 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 19:05:32] 2025-10-13 17:04:47,325 | INFO     | update_server=False
[2025-10-13 19:05:32] 2025-10-13 17:04:47,325 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 19:05:32] 2025-10-13 17:04:47,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:05:32] 2025-10-13 17:04:47,822 | INFO     | all payload control threads have been joined
[2025-10-13 19:05:32] 2025-10-13 17:04:47,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 19:05:32] 2025-10-13 17:04:48,304 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:05:32] 2025-10-13 17:04:48,304 | INFO     | aborting loop
[2025-10-13 19:05:32] 2025-10-13 17:04:48,331 | INFO     | [job] retrieve thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:48,332 | INFO     | [job] queue monitor thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:48,344 | INFO     | all data control threads have been joined
[2025-10-13 19:05:32] 2025-10-13 17:04:48,368 | INFO     | all job control threads have been joined
[2025-10-13 19:05:32] 2025-10-13 17:04:48,531 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:48,627 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:48,828 | INFO     | [payload] control thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:49,069 | INFO     | [data] copytool_in thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:49,258 | INFO     | [payload] validate_post thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:49,310 | INFO     | [job] job monitor thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:49,350 | INFO     | [data] control thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:49,359 | INFO     | [payload] failed_post thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:49,374 | INFO     | [job] control thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:49,699 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:49,709 | INFO     | [job] validate thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:49,727 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:49,878 | INFO     | [data] copytool_out thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:04:50,609 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 19:05:32] 2025-10-13 17:04:54,615 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 19:05:32] 2025-10-13 17:05:17,102 | INFO     | PID=3511154 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 19:05:32] 2025-10-13 17:05:17,102 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 19:05:32] 2025-10-13 17:05:17,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 19:05:32] 2025-10-13 17:05:17,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 19:05:32] 2025-10-13 17:05:26,526 | INFO     | [monitor] cgroup control has ended
[2025-10-13 19:05:32] 2025-10-13 17:05:26,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139999053068096)>', '<ExcThread(monitor, started 139998200321792)>']
[2025-10-13 19:05:32] 2025-10-13 17:05:27,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 19:05:32] 2025-10-13 17:05:27,155 | INFO     | [monitor] control thread has ended
[2025-10-13 19:05:32] 2025-10-13 17:05:31,745 | INFO     | all workflow threads have been joined
[2025-10-13 19:05:32] 2025-10-13 17:05:31,746 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 19:05:32] 2025-10-13 17:05:31,746 | INFO     | traces error code: 0
[2025-10-13 19:05:32] 2025-10-13 17:05:31,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 19:05:32] 2025-10-13 17:05:31,797 [wrapper] ==== pilot stdout END ====
[2025-10-13 19:05:32] 2025-10-13 17:05:31,800 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 19:05:32] 2025-10-13 17:05:31,803 [wrapper] pilotpid: 3511154
[2025-10-13 19:05:32] 2025-10-13 17:05:31,806 [wrapper] Pilot exit status: 0
[2025-10-13 19:05:32] 2025-10-13 17:05:31,813 [wrapper] pandaids: 6841069021
[2025-10-13 19:05:32] 2025-10-13 17:05:31,831 [wrapper] cleanup supervisor_pilot 3530284 3511155
[2025-10-13 19:05:32] 2025-10-13 17:05:31,834 [wrapper] Test setup, not cleaning
[2025-10-13 19:05:32] 2025-10-13 17:05:31,837 [wrapper] apfmon messages muted
[2025-10-13 19:05:32] 2025-10-13 17:05:31,839 [wrapper] ==== wrapper stdout END ====
[2025-10-13 19:05:32] 2025-10-13 17:05:31,842 [wrapper] ==== wrapper stderr END ====
[2025-10-13 19:05:32]  *** Error codes and diagnostics ***
[2025-10-13 19:05:32]     "exeErrorCode": 0,
[2025-10-13 19:05:32]     "exeErrorDiag": "",
[2025-10-13 19:05:32]     "pilotErrorCode": 0,
[2025-10-13 19:05:32]     "pilotErrorDiag": "",
[2025-10-13 19:05:32]  *** Listing of results directory ***
[2025-10-13 19:05:32] total 416152
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc    557409 Oct 13 02:11 pilot3.tar.gz
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc      5112 Oct 13 02:35 queuedata.json
[2025-10-13 19:05:32] -rwx------ 1 boinc boinc     36292 Oct 13 02:35 runpilot2-wrapper.sh
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 19:05:32] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:29 run_atlas
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:29 job.xml
[2025-10-13 19:05:32] -rw-r--r-- 2 boinc boinc 221161282 Oct 13 17:29 EVNT.46676267._004696.pool.root.1
[2025-10-13 19:05:32] -rw-r--r-- 2 boinc boinc    569686 Oct 13 17:29 input.tar.gz
[2025-10-13 19:05:32] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:29 start_atlas.sh
[2025-10-13 19:05:32] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:29 shared
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:29 boinc_setup_complete
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc      6195 Oct 13 17:29 init_data.xml
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:29 boinc_lockfile
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc      2550 Oct 13 17:29 pandaJob.out
[2025-10-13 19:05:32] -rw------- 1 boinc boinc    972783 Oct 13 17:29 agis_schedconf.cvmfs.json
[2025-10-13 19:05:32] -rw------- 1 boinc boinc   1560580 Oct 13 17:29 agis_ddmendpoints.agis.ALL.json
[2025-10-13 19:05:32] drwx------ 5 boinc boinc      4096 Oct 13 17:29 pilot3
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc       530 Oct 13 19:04 boinc_task_state.xml
[2025-10-13 19:05:32] -rw------- 1 boinc boinc 198911675 Oct 13 19:04 HITS.46676269._093230.pool.root.1
[2025-10-13 19:05:32] -rw------- 1 boinc boinc      1015 Oct 13 19:04 memory_monitor_summary.json
[2025-10-13 19:05:32] -rw------- 1 boinc boinc    256024 Oct 13 19:04 log.46676269._093230.job.log.tgz.1
[2025-10-13 19:05:32] -rw------- 1 boinc boinc      7760 Oct 13 19:04 heartbeat.json
[2025-10-13 19:05:32] -rw------- 1 boinc boinc        95 Oct 13 19:05 pilot_heartbeat.json
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc        27 Oct 13 19:05 wrapper_checkpoint.txt
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc      8192 Oct 13 19:05 boinc_mmap_file
[2025-10-13 19:05:32] -rw------- 1 boinc boinc      4752 Oct 13 19:05 pilotlog.txt
[2025-10-13 19:05:32] -rw------- 1 boinc boinc    835340 Oct 13 19:05 log.46676269._093230.job.log.1
[2025-10-13 19:05:32] -rw------- 1 boinc boinc       357 Oct 13 19:05 output.list
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc       620 Oct 13 19:05 runtime_log
[2025-10-13 19:05:32] -rw------- 1 boinc boinc   1105920 Oct 13 19:05 result.tar.gz
[2025-10-13 19:05:32] -rw------- 1 boinc boinc       658 Oct 13 19:05 xriLDmhiLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmNOVMDmeoGv1m.diag
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc      8777 Oct 13 19:05 runtime_log.err
[2025-10-13 19:05:32] -rw-r--r-- 1 boinc boinc     11013 Oct 13 19:05 stderr.txt
[2025-10-13 19:05:32] HITS file was successfully produced:
[2025-10-13 19:05:32] -rw------- 1 boinc boinc 198911675 Oct 13 19:04 shared/HITS.pool.root.1
[2025-10-13 19:05:32]  *** Contents of shared directory: ***
[2025-10-13 19:05:32] total 411896
[2025-10-13 19:05:32] -rw-r--r-- 2 boinc boinc 221161282 Oct 13 17:29 ATLAS.root_0
[2025-10-13 19:05:32] -rw-r--r-- 2 boinc boinc    569686 Oct 13 17:29 input.tar.gz
[2025-10-13 19:05:32] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:29 start_atlas.sh
[2025-10-13 19:05:32] -rw------- 1 boinc boinc 198911675 Oct 13 19:04 HITS.pool.root.1
[2025-10-13 19:05:32] -rw------- 1 boinc boinc   1105920 Oct 13 19:05 result.tar.gz
19:05:34 (3507422): run_atlas exited; CPU time 16495.360290
19:05:34 (3507422): called boinc_finish(0)

</stderr_txt>
]]>

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