Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:45:46 (9975): wrapper (7.7.26015): starting
15:45:46 (9975): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 15:45:46] Arguments: --nthreads 8
[2025-10-13 15:45:46] Threads: 8
[2025-10-13 15:45:46] Checking for CVMFS
[2025-10-13 15:45:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:45:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:45:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:45:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:45:49] 2.11.2.0 24500 222092 141180 151662 1 60 17338008 25165825 4632 130560 0 101426193 99.860 70506045 4039 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 15:45:49] CVMFS is ok
[2025-10-13 15:45:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:45:49] Checking for apptainer binary...
[2025-10-13 15:45:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:45:49] Running /usr/bin/apptainer --version
[2025-10-13 15:45:49] apptainer version 1.3.2-1.el7
[2025-10-13 15:45:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:46:18] cg-vwn232.simple-grid.lan
[2025-10-13 15:46:18] apptainer works
[2025-10-13 15:46:18] Set ATHENA_PROC_NUMBER=8
[2025-10-13 15:46:18] Set ATHENA_CORE_NUMBER=8
[2025-10-13 15:46:19] Starting ATLAS job with PandaID=6840531850
[2025-10-13 15:46:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 20:13:27]  *** The last 200 lines of the pilot log: ***
[2025-10-13 20:13:27] 2025-10-13 18:12:39,971 | INFO     | sum of square deviations: 4844974562.5
[2025-10-13 20:13:27] 2025-10-13 18:12:39,973 | INFO     | sum of deviations: 95939428415.0
[2025-10-13 20:13:27] 2025-10-13 18:12:39,973 | INFO     | mean x: 1760371454.5
[2025-10-13 20:13:27] 2025-10-13 18:12:39,973 | INFO     | mean y: 2432168.6
[2025-10-13 20:13:27] 2025-10-13 18:12:39,973 | INFO     | -- intersect: -34856168008.583534
[2025-10-13 20:13:27] 2025-10-13 18:12:39,973 | INFO     | intersect: -34856168008.583534
[2025-10-13 20:13:27] 2025-10-13 18:12:39,974 | INFO     | chi2: 5.091100861976987
[2025-10-13 20:13:27] 2025-10-13 18:12:39,985 | INFO     | sum of square deviations: 4560048290.0
[2025-10-13 20:13:27] 2025-10-13 18:12:39,987 | INFO     | sum of deviations: 110235309725.0
[2025-10-13 20:13:27] 2025-10-13 18:12:39,987 | INFO     | mean x: 1760371302.0
[2025-10-13 20:13:27] 2025-10-13 18:12:39,987 | INFO     | mean y: 2439676.8448979594
[2025-10-13 20:13:27] 2025-10-13 18:12:39,987 | INFO     | -- intersect: -42553047319.31837
[2025-10-13 20:13:27] 2025-10-13 18:12:39,988 | INFO     | intersect: -42553047319.31837
[2025-10-13 20:13:27] 2025-10-13 18:12:39,988 | INFO     | chi2: 4.346463629726257
[2025-10-13 20:13:27] 2025-10-13 18:12:39,988 | INFO     | current chi2=4.346463629726257 (change=14.626251815438806 %)
[2025-10-13 20:13:27] 2025-10-13 18:12:39,988 | INFO     | right removable region: 244
[2025-10-13 20:13:27] 2025-10-13 18:12:39,989 | INFO     | sum of square deviations: 4560048290.0
[2025-10-13 20:13:27] 2025-10-13 18:12:39,991 | INFO     | sum of deviations: 17051517026.000006
[2025-10-13 20:13:27] 2025-10-13 18:12:39,991 | INFO     | mean x: 1760371607.0
[2025-10-13 20:13:27] 2025-10-13 18:12:39,991 | INFO     | mean y: 2474320.1959183672
[2025-10-13 20:13:27] 2025-10-13 18:12:39,991 | INFO     | -- intersect: -6580132819.003367
[2025-10-13 20:13:27] 2025-10-13 18:12:39,992 | INFO     | intersect: -6580132819.003367
[2025-10-13 20:13:27] 2025-10-13 18:12:39,992 | INFO     | chi2: 1.1848077086937772
[2025-10-13 20:13:27] 2025-10-13 18:12:39,992 | INFO     | current chi2=1.1848077086937772 (change=76.72786808168459 %)
[2025-10-13 20:13:27] 2025-10-13 18:12:39,993 | INFO     | sum of square deviations: 4286517580.0
[2025-10-13 20:13:27] 2025-10-13 18:12:39,995 | INFO     | sum of deviations: -594300094.4999981
[2025-10-13 20:13:27] 2025-10-13 18:12:39,995 | INFO     | mean x: 1760371759.5
[2025-10-13 20:13:27] 2025-10-13 18:12:39,995 | INFO     | mean y: 2484052.8041666667
[2025-10-13 20:13:27] 2025-10-13 18:12:39,995 | INFO     | -- intersect: 246549097.0972961
[2025-10-13 20:13:27] 2025-10-13 18:12:39,995 | INFO     | intersect: 246549097.0972961
[2025-10-13 20:13:27] 2025-10-13 18:12:39,996 | INFO     | chi2: 0.8141514034812655
[2025-10-13 20:13:27] 2025-10-13 18:12:39,996 | INFO     | current chi2=0.8141514034812655 (change=31.284089603126535 %)
[2025-10-13 20:13:27] 2025-10-13 18:12:39,996 | INFO     | sum of square deviations: 4024149870.0
[2025-10-13 20:13:27] 2025-10-13 18:12:39,998 | INFO     | sum of deviations: -4373632472.999998
[2025-10-13 20:13:27] 2025-10-13 18:12:39,998 | INFO     | mean x: 1760371912.0
[2025-10-13 20:13:27] 2025-10-13 18:12:39,999 | INFO     | mean y: 2486223.906382979
[2025-10-13 20:13:27] 2025-10-13 18:12:39,999 | INFO     | -- intersect: 1915739956.3972893
[2025-10-13 20:13:27] 2025-10-13 18:12:39,999 | INFO     | intersect: 1915739956.3972893
[2025-10-13 20:13:27] 2025-10-13 18:12:39,999 | INFO     | chi2: 0.7931562431599525
[2025-10-13 20:13:27] 2025-10-13 18:12:39,999 | INFO     | current chi2=0.7931562431599525 (change=2.578778373597204 %)
[2025-10-13 20:13:27] 2025-10-13 18:12:40,000 | INFO     | left removable region: 30
[2025-10-13 20:13:27] 2025-10-13 18:12:40,000 | INFO     | sum of square deviations: 3038856977.5
[2025-10-13 20:13:27] 2025-10-13 18:12:40,036 | INFO     | sum of deviations: 7436752231.000001
[2025-10-13 20:13:27] 2025-10-13 18:12:40,036 | INFO     | mean x: 1760372186.5
[2025-10-13 20:13:27] 2025-10-13 18:12:40,036 | INFO     | mean y: 2497697.6728971964
[2025-10-13 20:13:27] 2025-10-13 18:12:40,036 | INFO     | -- intersect: -4305520706.047527
[2025-10-13 20:13:27] 2025-10-13 18:12:40,037 | INFO     | intersect: -4305520706.047527
[2025-10-13 20:13:27] 2025-10-13 18:12:40,037 | INFO     | chi2: 0.0009166278126883128
[2025-10-13 20:13:27] 2025-10-13 18:12:40,037 | INFO     | -- intersect: -4305520706.047527
[2025-10-13 20:13:27] 2025-10-13 18:12:40,037 | INFO     | current memory leak: 2.45 B/s (using 214 data points, chi2=0.00)
[2025-10-13 20:13:27] 2025-10-13 18:12:40,038 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-10-13 20:13:27] 2025-10-13 18:12:40,038 | INFO     | ..............................
[2025-10-13 20:13:27] 2025-10-13 18:12:40,038 | INFO     | . Timing measurements:
[2025-10-13 20:13:27] 2025-10-13 18:12:40,039 | INFO     | . get job = 0 s
[2025-10-13 20:13:27] 2025-10-13 18:12:40,039 | INFO     | . initial setup = 9 s
[2025-10-13 20:13:27] 2025-10-13 18:12:40,039 | INFO     | . payload setup = 126 s
[2025-10-13 20:13:27] 2025-10-13 18:12:40,039 | INFO     | . stage-in = 0 s
[2025-10-13 20:13:27] 2025-10-13 18:12:40,039 | INFO     | . payload execution = 15359 s
[2025-10-13 20:13:27] 2025-10-13 18:12:40,039 | INFO     | . stage-out = 3 s
[2025-10-13 20:13:27] 2025-10-13 18:12:40,039 | INFO     | . log creation = 1 s
[2025-10-13 20:13:27] 2025-10-13 18:12:40,039 | INFO     | ..............................
[2025-10-13 20:13:27] 2025-10-13 18:12:40,219 | INFO     | time since job start (15771s) is within the limit (172800.0s)
[2025-10-13 20:13:27] 2025-10-13 18:12:40,535 | INFO     | 
[2025-10-13 20:13:27] 2025-10-13 18:12:40,536 | INFO     | job summary report
[2025-10-13 20:13:27] 2025-10-13 18:12:40,536 | INFO     | --------------------------------------------------
[2025-10-13 20:13:27] 2025-10-13 18:12:40,536 | INFO     | PanDA job id: 6840531850
[2025-10-13 20:13:27] 2025-10-13 18:12:40,536 | INFO     | task id: 46676269
[2025-10-13 20:13:27] 2025-10-13 18:12:40,536 | INFO     | errors: (none)
[2025-10-13 20:13:27] 2025-10-13 18:12:40,536 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 20:13:27] 2025-10-13 18:12:40,536 | INFO     | pilot state: finished 
[2025-10-13 20:13:27] 2025-10-13 18:12:40,536 | INFO     | transexitcode: 0
[2025-10-13 20:13:27] 2025-10-13 18:12:40,536 | INFO     | exeerrorcode: 0
[2025-10-13 20:13:27] 2025-10-13 18:12:40,536 | INFO     | exeerrordiag: 
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | exitcode: 0
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | exitmsg: OK
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | cpuconsumptiontime: 56973 s
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | nevents: 400
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | neventsw: 0
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | pid: 20272
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | pgrp: 20272
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | corecount: 8
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | event service: False
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | sizes: {0: 2348624, 1: 2348879, 12: 2348879, 23: 2348907, 33: 2348935, 44: 2348991, 55: 2349147, 66: 2349175, 76: 2349203, 87: 2349259, 90: 2349549, 98: 2349857, 1
[2025-10-13 20:13:27] 2025-10-13 18:12:40,537 | INFO     | --------------------------------------------------
[2025-10-13 20:13:27] 2025-10-13 18:12:40,538 | INFO     | 
[2025-10-13 20:13:27] 2025-10-13 18:12:40,538 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-10-13 20:13:27] 2025-10-13 18:12:41,090 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,090 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,090 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,090 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,090 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,091 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,091 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,091 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,091 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,091 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,091 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,091 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,091 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,091 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,092 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,092 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,092 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 20:13:27] 2025-10-13 18:12:41,092 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,092 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 20:13:27] 2025-10-13 18:12:41,092 | INFO     | job 6840531850 has completed (purged errors)
[2025-10-13 20:13:27] 2025-10-13 18:12:41,092 | INFO     | overall cleanup function is called
[2025-10-13 20:13:27] 2025-10-13 18:12:42,101 | INFO     | --- collectZombieJob: --- 10, [20272]
[2025-10-13 20:13:27] 2025-10-13 18:12:42,102 | INFO     | zombie collector waiting for pid 20272
[2025-10-13 20:13:27] 2025-10-13 18:12:42,102 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 20:13:27] 2025-10-13 18:12:42,102 | INFO     | collected zombie processes
[2025-10-13 20:13:27] 2025-10-13 18:12:42,102 | INFO     | will attempt to kill all subprocesses of pid=20272
[2025-10-13 20:13:27] 2025-10-13 18:12:42,222 | INFO     | process IDs to be killed: [20272] (in reverse order)
[2025-10-13 20:13:27] 2025-10-13 18:12:42,671 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 20:13:27] 2025-10-13 18:12:42,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 20:13:27] 2025-10-13 18:12:42,675 | INFO     | did not find any defunct processes belonging to 20272
[2025-10-13 20:13:27] 2025-10-13 18:12:42,678 | INFO     | did not find any defunct processes belonging to 20272
[2025-10-13 20:13:27] 2025-10-13 18:12:42,678 | INFO     | ready for new job
[2025-10-13 20:13:27] 2025-10-13 18:12:42,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 20:13:27] 2025-10-13 18:12:42,681 | INFO     | ***************************************
[2025-10-13 20:13:27] 2025-10-13 18:12:42,681 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 20:13:27] 2025-10-13 18:12:42,681 | INFO     | ***************************************
[2025-10-13 20:13:27] 2025-10-13 18:12:42,681 | INFO     | 
[2025-10-13 20:13:27] 2025-10-13 18:12:42,682 | INFO     | pilot is running in a VM
[2025-10-13 20:13:27] 2025-10-13 18:12:42,682 | INFO     | architecture information:
[2025-10-13 20:13:27] 2025-10-13 18:12:42,692 | INFO     | executing command: cat /etc/os-release
[2025-10-13 20:13:27] 2025-10-13 18:12:42,954 | INFO     | cat /etc/os-release:
[2025-10-13 20:13:27] NAME="CentOS Linux"
[2025-10-13 20:13:27] VERSION="7 (Core)"
[2025-10-13 20:13:27] ID="centos"
[2025-10-13 20:13:27] ID_LIKE="rhel fedora"
[2025-10-13 20:13:27] VERSION_ID="7"
[2025-10-13 20:13:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 20:13:27] ANSI_COLOR="0;31"
[2025-10-13 20:13:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 20:13:27] HOME_URL="https://www.centos.org/"
[2025-10-13 20:13:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 20:13:27] 
[2025-10-13 20:13:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 20:13:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 20:13:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 20:13:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 20:13:27] 
[2025-10-13 20:13:27] 2025-10-13 18:12:42,954 | INFO     | ***************************************
[2025-10-13 20:13:27] 2025-10-13 18:12:43,456 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-10-13 20:13:27] 2025-10-13 18:12:43,734 | INFO     | sufficient remaining disk space (495760441344 B)
[2025-10-13 20:13:27] 2025-10-13 18:12:43,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 20:13:27] 2025-10-13 18:12:43,735 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 20:13:27] 2025-10-13 18:12:43,735 | INFO     | update_server=False
[2025-10-13 20:13:27] 2025-10-13 18:12:43,735 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 20:13:27] 2025-10-13 18:12:43,994 | INFO     | all payload control threads have been joined
[2025-10-13 20:13:27] 2025-10-13 18:12:44,093 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 20:13:27] 2025-10-13 18:12:44,094 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 20:13:27] 2025-10-13 18:12:44,094 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:13:27] 2025-10-13 18:12:44,094 | INFO     | will abort loop
[2025-10-13 20:13:27] 2025-10-13 18:12:44,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 20:13:27] 2025-10-13 18:12:44,406 | INFO     | all data control threads have been joined
[2025-10-13 20:13:27] 2025-10-13 18:12:44,655 | INFO     | all job control threads have been joined
[2025-10-13 20:13:27] 2025-10-13 18:12:44,739 | INFO     | [job] retrieve thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:44,848 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:44,900 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 20:13:27] 2025-10-13 18:12:45,000 | INFO     | [payload] control thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:45,079 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:45,100 | INFO     | [job] job monitor thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:45,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:13:27] 2025-10-13 18:12:45,385 | INFO     | [payload] validate_post thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:45,413 | INFO     | [data] control thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:45,602 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:45,661 | INFO     | [job] control thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:45,669 | INFO     | [data] copytool_in thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:45,893 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:46,136 | INFO     | [payload] failed_post thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:46,201 | INFO     | [job] validate thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:46,241 | INFO     | [job] queue monitor thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:46,266 | INFO     | [data] copytool_out thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:12:48,911 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 20:13:27] 2025-10-13 18:13:13,404 | INFO     | PID=13750 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 20:13:27] 2025-10-13 18:13:13,404 | INFO     | .. there are 9 such processes running
[2025-10-13 20:13:27] 2025-10-13 18:13:13,405 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 20:13:27] 2025-10-13 18:13:13,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 20:13:27] 2025-10-13 18:13:13,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 20:13:27] 2025-10-13 18:13:16,293 | INFO     | [monitor] cgroup control has ended
[2025-10-13 20:13:27] 2025-10-13 18:13:17,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140237266003776)>', '<ExcThread(monitor, started 140236822656768)>']
[2025-10-13 20:13:27] 2025-10-13 18:13:18,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 20:13:27] 2025-10-13 18:13:18,435 | INFO     | [monitor] control thread has ended
[2025-10-13 20:13:27] 2025-10-13 18:13:22,540 | INFO     | all workflow threads have been joined
[2025-10-13 20:13:27] 2025-10-13 18:13:22,541 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 20:13:27] 2025-10-13 18:13:22,541 | INFO     | traces error code: 0
[2025-10-13 20:13:27] 2025-10-13 18:13:22,541 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 20:13:27] 2025-10-13 18:13:22,881 [wrapper] ==== pilot stdout END ====
[2025-10-13 20:13:27] 2025-10-13 18:13:22,949 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 20:13:27] 2025-10-13 18:13:23,033 [wrapper] pilotpid: 13750
[2025-10-13 20:13:27] 2025-10-13 18:13:23,118 [wrapper] Pilot exit status: 0
[2025-10-13 20:13:27] 2025-10-13 18:13:23,606 [wrapper] pandaids: 6840531850
[2025-10-13 20:13:27] 2025-10-13 18:13:24,529 [wrapper] cleanup supervisor_pilot 12996 13751
[2025-10-13 20:13:27] 2025-10-13 18:13:24,585 [wrapper] Test setup, not cleaning
[2025-10-13 20:13:27] 2025-10-13 18:13:24,636 [wrapper] apfmon messages muted
[2025-10-13 20:13:27] 2025-10-13 18:13:24,694 [wrapper] ==== wrapper stdout END ====
[2025-10-13 20:13:27] 2025-10-13 18:13:24,742 [wrapper] ==== wrapper stderr END ====
[2025-10-13 20:13:27]  *** Error codes and diagnostics ***
[2025-10-13 20:13:27]     "exeErrorCode": 0,
[2025-10-13 20:13:27]     "exeErrorDiag": "",
[2025-10-13 20:13:27]     "pilotErrorCode": 0,
[2025-10-13 20:13:27]     "pilotErrorDiag": "",
[2025-10-13 20:13:27]  *** Listing of results directory ***
[2025-10-13 20:13:27] total 421140
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc    557409 Oct 12 19:57 pilot3.tar.gz
[2025-10-13 20:13:27] -rwx------. 1 boinc boinc     36292 Oct 12 20:13 runpilot2-wrapper.sh
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc      5112 Oct 12 20:13 queuedata.json
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc       100 Oct 13 15:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 20:13:27] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 15:45 run_atlas
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc       105 Oct 13 15:45 job.xml
[2025-10-13 20:13:27] -rw-r--r--. 2 boinc boinc 224044927 Oct 13 15:45 EVNT.46676267._004395.pool.root.1
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc      6390 Oct 13 15:45 init_data.xml
[2025-10-13 20:13:27] -rw-r--r--. 2 boinc boinc     15120 Oct 13 15:45 start_atlas.sh
[2025-10-13 20:13:27] drwxrwx--x. 2 boinc boinc        68 Oct 13 15:45 shared
[2025-10-13 20:13:27] -rw-r--r--. 2 boinc boinc    569678 Oct 13 15:45 input.tar.gz
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc         0 Oct 13 15:45 boinc_lockfile
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc      2547 Oct 13 15:46 pandaJob.out
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc    972489 Oct 13 15:49 agis_schedconf.cvmfs.json
[2025-10-13 20:13:27] drwx------. 5 boinc boinc      4096 Oct 13 15:49 pilot3
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc 198157310 Oct 13 20:09 HITS.46676269._085871.pool.root.1
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc       531 Oct 13 20:10 boinc_task_state.xml
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc      1019 Oct 13 20:11 memory_monitor_summary.json
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc   1560580 Oct 13 20:11 agis_ddmendpoints.agis.ALL.json
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc    462110 Oct 13 20:11 log.46676269._085871.job.log.tgz.1
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc      7783 Oct 13 20:12 heartbeat.json
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc      8192 Oct 13 20:13 boinc_mmap_file
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc        28 Oct 13 20:13 wrapper_checkpoint.txt
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc        95 Oct 13 20:13 pilot_heartbeat.json
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc      5070 Oct 13 20:13 pilotlog.txt
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc   2116094 Oct 13 20:13 log.46676269._085871.job.log.1
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc       357 Oct 13 20:13 output.list
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc       620 Oct 13 20:13 runtime_log
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc   2600960 Oct 13 20:13 result.tar.gz
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc      8703 Oct 13 20:13 runtime_log.err
[2025-10-13 20:13:27] -rw-------. 1 boinc boinc       657 Oct 13 20:13 9JTLDmGkFS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmTfUMDmfyaPMo.diag
[2025-10-13 20:13:27] -rw-r--r--. 1 boinc boinc     20671 Oct 13 20:13 stderr.txt
[2025-10-13 20:13:28] HITS file was successfully produced:
[2025-10-13 20:13:28] -rw-------. 1 boinc boinc 198157310 Oct 13 20:09 shared/HITS.pool.root.1
[2025-10-13 20:13:28]  *** Contents of shared directory: ***
[2025-10-13 20:13:28] total 415428
[2025-10-13 20:13:28] -rw-r--r--. 2 boinc boinc 224044927 Oct 13 15:45 ATLAS.root_0
[2025-10-13 20:13:28] -rw-r--r--. 2 boinc boinc     15120 Oct 13 15:45 start_atlas.sh
[2025-10-13 20:13:28] -rw-r--r--. 2 boinc boinc    569678 Oct 13 15:45 input.tar.gz
[2025-10-13 20:13:28] -rw-------. 1 boinc boinc 198157310 Oct 13 20:09 HITS.pool.root.1
[2025-10-13 20:13:28] -rw-------. 1 boinc boinc   2600960 Oct 13 20:13 result.tar.gz
20:13:29 (9975): run_atlas exited; CPU time 57194.288848
20:13:29 (9975): called boinc_finish(0)

</stderr_txt>
]]>

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