Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:26:27 (2925941): wrapper (7.7.26015): starting
21:26:27 (2925941): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 21:26:27] Arguments: --nthreads 6
[2025-10-13 21:26:27] Threads: 6
[2025-10-13 21:26:27] Checking for CVMFS
[2025-10-13 21:26:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 21:26:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 21:26:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 21:26:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 21:26:28] 2.11.5.0 3385007 5847 98248 151661 2 56 13692212 20971521 929 130560 0 11590358 99.996 199058 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 21:26:28] CVMFS is ok
[2025-10-13 21:26:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 21:26:28] Checking for apptainer binary...
[2025-10-13 21:26:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 21:26:28] Running /usr/bin/apptainer --version
[2025-10-13 21:26:28] apptainer version 1.3.6-1.el9
[2025-10-13 21:26:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 21:26:28] testio006
[2025-10-13 21:26:28] apptainer works
[2025-10-13 21:26:28] Set ATHENA_PROC_NUMBER=6
[2025-10-13 21:26:28] Set ATHENA_CORE_NUMBER=6
[2025-10-13 21:26:28] Starting ATLAS job with PandaID=6840711630
[2025-10-13 21:26:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:46:49]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:46:49]  lfn=log.46676269._087198.job.log.tgz.1
[2025-10-13 22:46:49]  mtime=0
[2025-10-13 22:46:49]  protocol_id=None
[2025-10-13 22:46:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 22:46:49]  replicas=None
[2025-10-13 22:46:49]  scope=mc23_13p6TeV
[2025-10-13 22:46:49]  status=None
[2025-10-13 22:46:49]  status_code=0
[2025-10-13 22:46:49]  storage_token=
[2025-10-13 22:46:49]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6840711630/log.46676269._087198.job.log.tgz.1
[2025-10-13 22:46:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/30/log.46676269._087198.job.log.tgz.1
[2025-10-13 22:46:49]  workdir=None
[2025-10-13 22:46:49] ]
[2025-10-13 22:46:49] 2025-10-13 13:45:46,498 | INFO     | transferring file log.46676269._087198.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6840711630/log.46676269._087198.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 22:46:49] 2025-10-13 13:45:46,498 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6840711630/log.46676269._087198.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._087198.job
[2025-10-13 22:46:49] 2025-10-13 13:45:46,508 | INFO     | adding to output.list: log.46676269._087198.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/30/log.46676269._087198.job.log.tg
[2025-10-13 22:46:49] 2025-10-13 13:45:46,509 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 22:46:49] 2025-10-13 13:45:46,509 | INFO     | summary of transferred files:
[2025-10-13 22:46:49] 2025-10-13 13:45:46,509 | INFO     |  -- lfn=log.46676269._087198.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 22:46:49] 2025-10-13 13:45:46,509 | INFO     | stage-out finished correctly
[2025-10-13 22:46:49] 2025-10-13 13:45:46,556 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 22:46:49] 2025-10-13 13:45:46,600 | INFO     | job 6840711630 has state=finished
[2025-10-13 22:46:49] 2025-10-13 13:45:46,600 | INFO     | preparing for final server update for job 6840711630 in state='finished'
[2025-10-13 22:46:49] 2025-10-13 13:45:46,601 | INFO     | this job has now completed (state=finished)
[2025-10-13 22:46:49] 2025-10-13 13:45:46,601 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 22:46:49] 2025-10-13 13:45:46,601 | INFO     | log transfer has been attempted: DONE
[2025-10-13 22:46:49] 2025-10-13 13:45:46,601 | INFO     | job 6840711630 has finished - writing final server update
[2025-10-13 22:46:49] 2025-10-13 13:45:46,601 | INFO     | total number of processed events: 400 (read)
[2025-10-13 22:46:49] 2025-10-13 13:45:46,602 | INFO     | executing command: lscpu
[2025-10-13 22:46:49] 2025-10-13 13:45:46,616 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 22:46:49] 2025-10-13 13:45:48,271 | INFO     | monitor loop #351: job 0:6840711630 is in state 'finished'
[2025-10-13 22:46:49] 2025-10-13 13:45:48,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:46:49] 2025-10-13 13:45:48,291 | INFO     | time since job start (4751s) is within the limit (172800.0s)
[2025-10-13 22:46:49] 2025-10-13 13:45:48,835 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 22:46:49] 2025-10-13 13:45:48,837 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4058.7288750000002
[2025-10-13 22:46:49] 2025-10-13 13:45:48,839 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840711630/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 22:46:49] 2025-10-13 13:45:48,839 | INFO     | extracted standard info from prmon json
[2025-10-13 22:46:49] 2025-10-13 13:45:48,839 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 22:46:49] 2025-10-13 13:45:48,839 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 22:46:49] 2025-10-13 13:45:48,839 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 22:46:49] 2025-10-13 13:45:48,839 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 22:46:49] 2025-10-13 13:45:48,840 | INFO     | fitting pss+swap vs Time
[2025-10-13 22:46:49] 2025-10-13 13:45:48,840 | INFO     | sum of square deviations: 110960220.0
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | sum of deviations: -6076392634.0
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | mean x: 1760360856.0
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | mean y: 2569149.8169014086
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | -- intersect: 96403276886.16002
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | intersect: 96403276886.16002
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | chi2: 0.05284641850023632
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | -- intersect: 96403276886.16002
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | current memory leak: -54.76 B/s (using 71 data points, chi2=0.05)
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | could have reported an average CPU frequency of 4000 MHz (6 samples)
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | ..............................
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | . Timing measurements:
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | . get job = 0 s
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | . initial setup = 5 s
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | . payload setup = 2 s
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | . stage-in = 0 s
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | . payload execution = 4729 s
[2025-10-13 22:46:49] 2025-10-13 13:45:48,841 | INFO     | . stage-out = 0 s
[2025-10-13 22:46:49] 2025-10-13 13:45:48,842 | INFO     | . log creation = 0 s
[2025-10-13 22:46:49] 2025-10-13 13:45:48,842 | INFO     | ..............................
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | 
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | job summary report
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | --------------------------------------------------
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | PanDA job id: 6840711630
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | task id: 46676269
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | errors: (none)
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | pilot state: finished 
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | transexitcode: 0
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | exeerrorcode: 0
[2025-10-13 22:46:49] 2025-10-13 13:45:48,890 | INFO     | exeerrordiag: 
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | exitcode: 0
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | exitmsg: OK
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | cpuconsumptiontime: 25935 s
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | nevents: 400
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | neventsw: 0
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | pid: 2936455
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | pgrp: 2936455
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | corecount: 6
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | event service: False
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | sizes: {0: 2348029, 1: 2348885, 3: 2349147, 11: 2349175, 4735: 2384426, 4738: 2384564}
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | --------------------------------------------------
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | 
[2025-10-13 22:46:49] 2025-10-13 13:45:48,891 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 22:46:49] 2025-10-13 13:45:48,901 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,901 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,901 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,901 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,901 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,901 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,901 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,901 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | job 6840711630 has completed (purged errors)
[2025-10-13 22:46:49] 2025-10-13 13:45:48,902 | INFO     | overall cleanup function is called
[2025-10-13 22:46:49] 2025-10-13 13:45:49,909 | INFO     | --- collectZombieJob: --- 10, [2936455]
[2025-10-13 22:46:49] 2025-10-13 13:45:49,909 | INFO     | zombie collector waiting for pid 2936455
[2025-10-13 22:46:49] 2025-10-13 13:45:49,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 22:46:49] 2025-10-13 13:45:49,909 | INFO     | collected zombie processes
[2025-10-13 22:46:49] 2025-10-13 13:45:49,909 | INFO     | will attempt to kill all subprocesses of pid=2936455
[2025-10-13 22:46:49] 2025-10-13 13:45:49,968 | INFO     | process IDs to be killed: [2936455] (in reverse order)
[2025-10-13 22:46:49] 2025-10-13 13:45:49,994 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 22:46:49] 2025-10-13 13:45:49,994 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 22:46:49] 2025-10-13 13:45:49,996 | INFO     | did not find any defunct processes belonging to 2936455
[2025-10-13 22:46:49] 2025-10-13 13:45:49,998 | INFO     | did not find any defunct processes belonging to 2936455
[2025-10-13 22:46:49] 2025-10-13 13:45:49,998 | INFO     | ready for new job
[2025-10-13 22:46:49] 2025-10-13 13:45:49,998 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 22:46:49] 2025-10-13 13:45:49,999 | INFO     | ***************************************
[2025-10-13 22:46:49] 2025-10-13 13:45:49,999 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 22:46:49] 2025-10-13 13:45:49,999 | INFO     | ***************************************
[2025-10-13 22:46:49] 2025-10-13 13:45:49,999 | INFO     | 
[2025-10-13 22:46:49] 2025-10-13 13:45:50,000 | INFO     | architecture information:
[2025-10-13 22:46:49] 2025-10-13 13:45:50,000 | INFO     | executing command: cat /etc/os-release
[2025-10-13 22:46:49] 2025-10-13 13:45:50,009 | INFO     | cat /etc/os-release:
[2025-10-13 22:46:49] NAME="CentOS Linux"
[2025-10-13 22:46:49] VERSION="7 (Core)"
[2025-10-13 22:46:49] ID="centos"
[2025-10-13 22:46:49] ID_LIKE="rhel fedora"
[2025-10-13 22:46:49] VERSION_ID="7"
[2025-10-13 22:46:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 22:46:49] ANSI_COLOR="0;31"
[2025-10-13 22:46:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 22:46:49] HOME_URL="https://www.centos.org/"
[2025-10-13 22:46:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 22:46:49] 
[2025-10-13 22:46:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 22:46:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 22:46:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 22:46:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 22:46:49] 
[2025-10-13 22:46:49] 2025-10-13 13:45:50,009 | INFO     | ***************************************
[2025-10-13 22:46:49] 2025-10-13 13:45:50,512 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 22:46:49] 2025-10-13 13:45:50,521 | INFO     | sufficient remaining disk space (84889567232 B)
[2025-10-13 22:46:49] 2025-10-13 13:45:50,521 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 22:46:49] 2025-10-13 13:45:50,521 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 22:46:49] 2025-10-13 13:45:50,521 | INFO     | update_server=False
[2025-10-13 22:46:49] 2025-10-13 13:45:50,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:46:49] 2025-10-13 13:45:50,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:46:49] 2025-10-13 13:45:50,521 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:46:49] 2025-10-13 13:45:50,774 | INFO     | all data control threads have been joined
[2025-10-13 22:46:49] 2025-10-13 13:45:50,774 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 22:46:49] 2025-10-13 13:45:50,774 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 22:46:49] 2025-10-13 13:45:50,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:46:49] 2025-10-13 13:45:50,774 | INFO     | will abort loop
[2025-10-13 22:46:49] 2025-10-13 13:45:51,527 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:51,527 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:51,607 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:51,626 | INFO     | all job control threads have been joined
[2025-10-13 22:46:49] 2025-10-13 13:45:51,713 | INFO     | all payload control threads have been joined
[2025-10-13 22:46:49] 2025-10-13 13:45:51,779 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:51,780 | INFO     | [data] control thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:51,912 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:51,945 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:52,311 | INFO     | [job] validate thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:52,413 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:52,505 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:52,527 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:52,562 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:52,562 | INFO     | job.realtimelogging is not enabled
[2025-10-13 22:46:49] 2025-10-13 13:45:52,606 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:46:49] 2025-10-13 13:45:52,632 | INFO     | [job] control thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:52,718 | INFO     | [payload] control thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:53,567 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:45:56,613 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:46:49] 2025-10-13 13:46:21,409 | INFO     | PID=2929719 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 22:46:49] 2025-10-13 13:46:21,409 | INFO     | .. there are 2 such processes running
[2025-10-13 22:46:49] 2025-10-13 13:46:21,410 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:46:49] 2025-10-13 13:46:21,410 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:46:49] 2025-10-13 13:46:21,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:46:49] 2025-10-13 13:46:43,971 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:46:49] 2025-10-13 13:46:44,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139924583671616)>', '<ExcThread(monitor, started 139923583657728)>']
[2025-10-13 22:46:49] 2025-10-13 13:46:45,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:46:49] 2025-10-13 13:46:45,537 | INFO     | [monitor] control thread has ended
[2025-10-13 22:46:49] 2025-10-13 13:46:49,798 | INFO     | all workflow threads have been joined
[2025-10-13 22:46:49] 2025-10-13 13:46:49,798 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:46:49] 2025-10-13 13:46:49,798 | INFO     | traces error code: 0
[2025-10-13 22:46:49] 2025-10-13 13:46:49,798 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:46:49] 2025-10-13 13:46:49,854 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:46:49] 2025-10-13 13:46:49,856 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:46:49] 2025-10-13 13:46:49,857 [wrapper] pilotpid: 2929719
[2025-10-13 22:46:49] 2025-10-13 13:46:49,859 [wrapper] Pilot exit status: 0
[2025-10-13 22:46:49] 2025-10-13 13:46:49,864 [wrapper] pandaids: 6840711630
[2025-10-13 22:46:49] 2025-10-13 13:46:49,882 [wrapper] cleanup supervisor_pilot 2972360 2929720
[2025-10-13 22:46:49] 2025-10-13 13:46:49,883 [wrapper] Test setup, not cleaning
[2025-10-13 22:46:49] 2025-10-13 13:46:49,885 [wrapper] apfmon messages muted
[2025-10-13 22:46:49] 2025-10-13 13:46:49,886 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:46:49] 2025-10-13 13:46:49,888 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:46:49]  *** Error codes and diagnostics ***
[2025-10-13 22:46:49]     "exeErrorCode": 0,
[2025-10-13 22:46:49]     "exeErrorDiag": "",
[2025-10-13 22:46:49]     "pilotErrorCode": 0,
[2025-10-13 22:46:49]     "pilotErrorDiag": "",
[2025-10-13 22:46:49]  *** Listing of results directory ***
[2025-10-13 22:46:49] total 412392
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc    557409 Oct 13 03:53 pilot3.tar.gz
[2025-10-13 22:46:49] -rwx------. 1 boinc boinc     36292 Oct 13 04:15 runpilot2-wrapper.sh
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc      5112 Oct 13 04:15 queuedata.json
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc       100 Oct 13 21:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:46:49] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 21:26 run_atlas
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc       105 Oct 13 21:26 job.xml
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc      9465 Oct 13 21:26 init_data.xml
[2025-10-13 22:46:49] -rw-r--r--. 2 boinc boinc 219546391 Oct 13 21:26 EVNT.46676267._004442.pool.root.1
[2025-10-13 22:46:49] -rw-r--r--. 2 boinc boinc     15120 Oct 13 21:26 start_atlas.sh
[2025-10-13 22:46:49] drwxrwx--x. 2 boinc boinc        68 Oct 13 21:26 shared
[2025-10-13 22:46:49] -rw-r--r--. 2 boinc boinc    569677 Oct 13 21:26 input.tar.gz
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc         0 Oct 13 21:26 boinc_lockfile
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc      2550 Oct 13 21:26 pandaJob.out
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc    972497 Oct 13 21:26 agis_schedconf.cvmfs.json
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc   1560580 Oct 13 21:26 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:46:49] drwx------. 5 boinc boinc      4096 Oct 13 21:26 pilot3
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc 196841600 Oct 13 22:45 HITS.46676269._087198.pool.root.1
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc      1031 Oct 13 22:45 memory_monitor_summary.json
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc       530 Oct 13 22:45 boinc_task_state.xml
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc    301960 Oct 13 22:45 log.46676269._087198.job.log.tgz.1
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc      7756 Oct 13 22:45 heartbeat.json
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc        95 Oct 13 22:46 pilot_heartbeat.json
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc        27 Oct 13 22:46 wrapper_checkpoint.txt
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc      8192 Oct 13 22:46 boinc_mmap_file
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc      5081 Oct 13 22:46 pilotlog.txt
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc    700926 Oct 13 22:46 log.46676269._087198.job.log.1
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc       357 Oct 13 22:46 output.list
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc       620 Oct 13 22:46 runtime_log
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc   1024000 Oct 13 22:46 result.tar.gz
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc       641 Oct 13 22:46 yv9MDmriGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmBmUMDmJxIGSo.diag
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc      8661 Oct 13 22:46 runtime_log.err
[2025-10-13 22:46:49] -rw-r--r--. 1 boinc boinc     21240 Oct 13 22:46 stderr.txt
[2025-10-13 22:46:49] HITS file was successfully produced:
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc 196841600 Oct 13 22:45 shared/HITS.pool.root.1
[2025-10-13 22:46:49]  *** Contents of shared directory: ***
[2025-10-13 22:46:49] total 408212
[2025-10-13 22:46:49] -rw-r--r--. 2 boinc boinc 219546391 Oct 13 21:26 ATLAS.root_0
[2025-10-13 22:46:49] -rw-r--r--. 2 boinc boinc     15120 Oct 13 21:26 start_atlas.sh
[2025-10-13 22:46:49] -rw-r--r--. 2 boinc boinc    569677 Oct 13 21:26 input.tar.gz
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc 196841600 Oct 13 22:45 HITS.pool.root.1
[2025-10-13 22:46:49] -rw-------. 1 boinc boinc   1024000 Oct 13 22:46 result.tar.gz
22:46:51 (2925941): run_atlas exited; CPU time 25977.444189
22:46:51 (2925941): called boinc_finish(0)

</stderr_txt>
]]>

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