Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:54:00 (2469803): wrapper (7.7.26015): starting
15:54:00 (2469803): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 15:54:00] Arguments: --nthreads 4
[2025-10-13 15:54:00] Threads: 4
[2025-10-13 15:54:00] Checking for CVMFS
[2025-10-13 15:54:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:54:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:54:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:54:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:54:01] 2.9.2.0 287733 5899 99700 151662 3 57 22565680 36864000 0 130560 0 5689805 99.993 199162 876 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 15:54:01] CVMFS is ok
[2025-10-13 15:54:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:54:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:54:01] Further information can be found at the LHC@home message board.
[2025-10-13 15:54:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:54:01] Checking for apptainer binary...
[2025-10-13 15:54:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:54:01] Running /usr/bin/apptainer --version
[2025-10-13 15:54:01] apptainer version 1.4.1-1.1
[2025-10-13 15:54:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:54:01] thA373a
[2025-10-13 15:54:01] apptainer works
[2025-10-13 15:54:01] Set ATHENA_PROC_NUMBER=4
[2025-10-13 15:54:01] Set ATHENA_CORE_NUMBER=4
[2025-10-13 15:54:01] Starting ATLAS job with PandaID=6840715167
[2025-10-13 15:54:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:10:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | job 6840715167 has completed (purged errors)
[2025-10-13 17:10:21] 2025-10-13 15:09:46,704 | INFO     | overall cleanup function is called
[2025-10-13 17:10:21] 2025-10-13 15:09:47,711 | INFO     | --- collectZombieJob: --- 10, [2480155]
[2025-10-13 17:10:21] 2025-10-13 15:09:47,711 | INFO     | zombie collector waiting for pid 2480155
[2025-10-13 17:10:21] 2025-10-13 15:09:47,711 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:10:21] 2025-10-13 15:09:47,711 | INFO     | collected zombie processes
[2025-10-13 17:10:21] 2025-10-13 15:09:47,711 | INFO     | will attempt to kill all subprocesses of pid=2480155
[2025-10-13 17:10:21] 2025-10-13 15:09:47,760 | INFO     | process IDs to be killed: [2480155] (in reverse order)
[2025-10-13 17:10:21] 2025-10-13 15:09:47,795 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:10:21] 2025-10-13 15:09:47,795 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:10:21] 2025-10-13 15:09:47,798 | INFO     | did not find any defunct processes belonging to 2480155
[2025-10-13 17:10:21] 2025-10-13 15:09:47,799 | INFO     | did not find any defunct processes belonging to 2480155
[2025-10-13 17:10:21] 2025-10-13 15:09:47,799 | INFO     | ready for new job
[2025-10-13 17:10:21] 2025-10-13 15:09:47,799 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:10:21] 2025-10-13 15:09:47,800 | INFO     | ***************************************
[2025-10-13 17:10:21] 2025-10-13 15:09:47,800 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:10:21] 2025-10-13 15:09:47,800 | INFO     | ***************************************
[2025-10-13 17:10:21] 2025-10-13 15:09:47,800 | INFO     | 
[2025-10-13 17:10:21] 2025-10-13 15:09:47,801 | INFO     | architecture information:
[2025-10-13 17:10:21] 2025-10-13 15:09:47,801 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:10:21] 2025-10-13 15:09:47,815 | INFO     | cat /etc/os-release:
[2025-10-13 17:10:21] NAME="CentOS Linux"
[2025-10-13 17:10:21] VERSION="7 (Core)"
[2025-10-13 17:10:21] ID="centos"
[2025-10-13 17:10:21] ID_LIKE="rhel fedora"
[2025-10-13 17:10:21] VERSION_ID="7"
[2025-10-13 17:10:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:10:21] ANSI_COLOR="0;31"
[2025-10-13 17:10:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:10:21] HOME_URL="https://www.centos.org/"
[2025-10-13 17:10:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:10:21] 
[2025-10-13 17:10:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:10:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:10:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:10:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:10:21] 
[2025-10-13 17:10:21] 2025-10-13 15:09:47,815 | INFO     | ***************************************
[2025-10-13 17:10:21] 2025-10-13 15:09:48,318 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 17:10:21] 2025-10-13 15:09:48,336 | INFO     | sufficient remaining disk space (338526470144 B)
[2025-10-13 17:10:21] 2025-10-13 15:09:48,336 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:10:21] 2025-10-13 15:09:48,336 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:10:21] 2025-10-13 15:09:48,336 | INFO     | update_server=False
[2025-10-13 17:10:21] 2025-10-13 15:09:48,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:10:21] 2025-10-13 15:09:48,337 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:10:21] 2025-10-13 15:09:48,337 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:10:21] 2025-10-13 15:09:48,386 | INFO     | all job control threads have been joined
[2025-10-13 17:10:21] 2025-10-13 15:09:48,756 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:10:21] 2025-10-13 15:09:48,851 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:10:21] 2025-10-13 15:09:48,852 | INFO     | aborting loop
[2025-10-13 17:10:21] 2025-10-13 15:09:48,870 | INFO     | all data control threads have been joined
[2025-10-13 17:10:21] 2025-10-13 15:09:49,342 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:49,343 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:49,391 | INFO     | [job] control thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:49,603 | INFO     | all payload control threads have been joined
[2025-10-13 17:10:21] 2025-10-13 15:09:49,695 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:49,776 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:49,857 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:49,876 | INFO     | [data] control thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:50,007 | INFO     | [job] validate thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:50,051 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:50,064 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:50,174 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:50,538 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:50,609 | INFO     | [payload] control thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:50,711 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:50,762 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:09:52,344 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:10:21] 2025-10-13 15:10:14,698 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:10:21] 2025-10-13 15:10:16,042 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140151235700544)>', '<ExcThread(monitor, started 140150143182592)>']
[2025-10-13 17:10:21] 2025-10-13 15:10:18,437 | INFO     | PID=2473593 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:10:21] 2025-10-13 15:10:18,437 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:10:21] 2025-10-13 15:10:18,437 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:10:21] 2025-10-13 15:10:18,437 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:10:21] 2025-10-13 15:10:18,437 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:10:21] 2025-10-13 15:10:18,437 | INFO     | [monitor] control thread has ended
[2025-10-13 17:10:21] 2025-10-13 15:10:21,066 | INFO     | all workflow threads have been joined
[2025-10-13 17:10:21] 2025-10-13 15:10:21,066 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:10:21] 2025-10-13 15:10:21,066 | INFO     | traces error code: 0
[2025-10-13 17:10:21] 2025-10-13 15:10:21,066 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:10:21] 2025-10-13 15:10:21,145 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:10:21] 2025-10-13 15:10:21,149 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:10:21] 2025-10-13 15:10:21,153 [wrapper] pilotpid: 2473593
[2025-10-13 17:10:21] 2025-10-13 15:10:21,157 [wrapper] Pilot exit status: 0
[2025-10-13 17:10:21] 2025-10-13 15:10:21,168 [wrapper] pandaids: 6840715167
[2025-10-13 17:10:21] 2025-10-13 15:10:21,192 [wrapper] cleanup supervisor_pilot 2493285 2473594
[2025-10-13 17:10:21] 2025-10-13 15:10:21,196 [wrapper] Test setup, not cleaning
[2025-10-13 17:10:21] 2025-10-13 15:10:21,201 [wrapper] apfmon messages muted
[2025-10-13 17:10:21] 2025-10-13 15:10:21,204 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:10:21] 2025-10-13 15:10:21,208 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:10:21]  *** Error codes and diagnostics ***
[2025-10-13 17:10:21]     "exeErrorCode": 0,
[2025-10-13 17:10:21]     "exeErrorDiag": "",
[2025-10-13 17:10:21]     "pilotErrorCode": 0,
[2025-10-13 17:10:21]     "pilotErrorDiag": "",
[2025-10-13 17:10:21]  *** Listing of results directory ***
[2025-10-13 17:10:21] total 414412
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc    557409 Oct 12 21:50 pilot3.tar.gz
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:57 queuedata.json
[2025-10-13 17:10:21] -rwx------ 1 boinc boinc     36292 Oct 12 21:58 runpilot2-wrapper.sh
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:10:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:54 run_atlas
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:54 job.xml
[2025-10-13 17:10:21] -rw-r--r-- 2 boinc boinc 220393307 Oct 13 15:54 EVNT.46676267._004479.pool.root.1
[2025-10-13 17:10:21] -rw-r--r-- 2 boinc boinc    569677 Oct 13 15:54 input.tar.gz
[2025-10-13 17:10:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:54 start_atlas.sh
[2025-10-13 17:10:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 15:54 shared
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:54 boinc_setup_complete
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc      6376 Oct 13 15:54 init_data.xml
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:54 boinc_lockfile
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc      2550 Oct 13 15:54 pandaJob.out
[2025-10-13 17:10:21] -rw------- 1 boinc boinc    972489 Oct 13 15:54 agis_schedconf.cvmfs.json
[2025-10-13 17:10:21] -rw------- 1 boinc boinc   1560580 Oct 13 15:54 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:10:21] drwx------ 5 boinc boinc      4096 Oct 13 15:54 pilot3
[2025-10-13 17:10:21] -rw------- 1 boinc boinc 198204874 Oct 13 17:09 HITS.46676269._088119.pool.root.1
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc       529 Oct 13 17:09 boinc_task_state.xml
[2025-10-13 17:10:21] -rw------- 1 boinc boinc        95 Oct 13 17:09 pilot_heartbeat.json
[2025-10-13 17:10:21] -rw------- 1 boinc boinc      1019 Oct 13 17:09 memory_monitor_summary.json
[2025-10-13 17:10:21] -rw------- 1 boinc boinc    264037 Oct 13 17:09 log.46676269._088119.job.log.tgz.1
[2025-10-13 17:10:21] -rw------- 1 boinc boinc      7761 Oct 13 17:09 heartbeat.json
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:09 boinc_mmap_file
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:09 wrapper_checkpoint.txt
[2025-10-13 17:10:21] -rw------- 1 boinc boinc      4752 Oct 13 17:10 pilotlog.txt
[2025-10-13 17:10:21] -rw------- 1 boinc boinc    670468 Oct 13 17:10 log.46676269._088119.job.log.1
[2025-10-13 17:10:21] -rw------- 1 boinc boinc       357 Oct 13 17:10 output.list
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:10 runtime_log
[2025-10-13 17:10:21] -rw------- 1 boinc boinc    952320 Oct 13 17:10 result.tar.gz
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc      8782 Oct 13 17:10 runtime_log.err
[2025-10-13 17:10:21] -rw------- 1 boinc boinc       659 Oct 13 17:10 qI7MDmuNHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbMlNDmHQMtzm.diag
[2025-10-13 17:10:21] -rw-r--r-- 1 boinc boinc     12348 Oct 13 17:10 stderr.txt
[2025-10-13 17:10:21] HITS file was successfully produced:
[2025-10-13 17:10:21] -rw------- 1 boinc boinc 198204874 Oct 13 17:09 shared/HITS.pool.root.1
[2025-10-13 17:10:21]  *** Contents of shared directory: ***
[2025-10-13 17:10:21] total 410304
[2025-10-13 17:10:21] -rw-r--r-- 2 boinc boinc 220393307 Oct 13 15:54 ATLAS.root_0
[2025-10-13 17:10:21] -rw-r--r-- 2 boinc boinc    569677 Oct 13 15:54 input.tar.gz
[2025-10-13 17:10:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:54 start_atlas.sh
[2025-10-13 17:10:21] -rw------- 1 boinc boinc 198204874 Oct 13 17:09 HITS.pool.root.1
[2025-10-13 17:10:21] -rw------- 1 boinc boinc    952320 Oct 13 17:10 result.tar.gz
17:10:22 (2469803): run_atlas exited; CPU time 17058.061834
17:10:22 (2469803): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN