Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:08:35 (21749): wrapper (7.7.26015): starting
01:08:35 (21749): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 01:08:35] Arguments: --nthreads 12
[2025-10-13 01:08:35] Threads: 12
[2025-10-13 01:08:35] Checking for CVMFS
[2025-10-13 01:08:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:08:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:08:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:08:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:08:35] 2.11.2.0 2979 223896 98216 151649 1 59 16096526 20275200 1 130560 1 109421458 99.984 13165980 12365 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 01:08:35] CVMFS is ok
[2025-10-13 01:08:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:08:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:08:35] Further information can be found at the LHC@home message board.
[2025-10-13 01:08:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:08:35] Checking for apptainer binary...
[2025-10-13 01:08:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:08:35] Running /usr/bin/apptainer --version
[2025-10-13 01:08:35] apptainer version 1.3.2-1.el7
[2025-10-13 01:08:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:08:36] c-205-21.aglt2.org
[2025-10-13 01:08:36] apptainer works
[2025-10-13 01:08:36] Set ATHENA_PROC_NUMBER=12
[2025-10-13 01:08:36] Set ATHENA_CORE_NUMBER=12
[2025-10-13 01:08:36] Starting ATLAS job with PandaID=6841068855
[2025-10-13 01:08:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:26:04]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:26:04]  mtime=0
[2025-10-13 02:26:04]  protocol_id=None
[2025-10-13 02:26:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 02:26:04]  replicas=None
[2025-10-13 02:26:04]  scope=mc23_13p6TeV
[2025-10-13 02:26:04]  status=None
[2025-10-13 02:26:04]  status_code=0
[2025-10-13 02:26:04]  storage_token=
[2025-10-13 02:26:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841068855/log.46676269._093091.job.log.tgz.1
[2025-10-13 02:26:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/72/log.46676269._093091.job.log.tgz.1
[2025-10-13 02:26:04]  workdir=None
[2025-10-13 02:26:04] ]
[2025-10-13 02:26:04] 2025-10-13 06:25:00,866 | INFO     | transferring file log.46676269._093091.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841068855/log.46676269._093091.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 02:26:04] 2025-10-13 06:25:00,867 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841068855/log.46676269._093091.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._093091.job
[2025-10-13 02:26:04] 2025-10-13 06:25:00,891 | INFO     | adding to output.list: log.46676269._093091.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/72/log.46676269._093091.job.log.tg
[2025-10-13 02:26:04] 2025-10-13 06:25:00,892 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 02:26:04] 2025-10-13 06:25:00,892 | INFO     | summary of transferred files:
[2025-10-13 02:26:04] 2025-10-13 06:25:00,893 | INFO     |  -- lfn=log.46676269._093091.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 02:26:04] 2025-10-13 06:25:00,893 | INFO     | stage-out finished correctly
[2025-10-13 02:26:04] 2025-10-13 06:25:02,154 | INFO     | time since job start (4570s) is within the limit (172800.0s)
[2025-10-13 02:26:04] 2025-10-13 06:25:02,340 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 02:26:04] 2025-10-13 06:25:02,577 | INFO     | job 6841068855 has state=finished
[2025-10-13 02:26:04] 2025-10-13 06:25:02,578 | INFO     | preparing for final server update for job 6841068855 in state='finished'
[2025-10-13 02:26:04] 2025-10-13 06:25:02,578 | INFO     | this job has now completed (state=finished)
[2025-10-13 02:26:04] 2025-10-13 06:25:02,578 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 02:26:04] 2025-10-13 06:25:02,578 | INFO     | log transfer has been attempted: DONE
[2025-10-13 02:26:04] 2025-10-13 06:25:02,578 | INFO     | job 6841068855 has finished - writing final server update
[2025-10-13 02:26:04] 2025-10-13 06:25:02,579 | INFO     | total number of processed events: 400 (read)
[2025-10-13 02:26:04] 2025-10-13 06:25:02,579 | INFO     | executing command: lscpu
[2025-10-13 02:26:04] 2025-10-13 06:25:02,606 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 02:26:04] 2025-10-13 06:25:03,271 | INFO     | monitor loop #341: job 0:6841068855 is in state 'finished'
[2025-10-13 02:26:04] 2025-10-13 06:25:03,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:26:04] 2025-10-13 06:25:03,276 | INFO     | PID=25433 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 02:26:04] 2025-10-13 06:25:04,277 | INFO     | time since job start (4572s) is within the limit (172800.0s)
[2025-10-13 02:26:04] 2025-10-13 06:25:05,774 | INFO     | monitor loop #342: job 0:6841068855 is in state 'finished'
[2025-10-13 02:26:04] 2025-10-13 06:25:05,775 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:26:04] 2025-10-13 06:25:06,282 | INFO     | time since job start (4574s) is within the limit (172800.0s)
[2025-10-13 02:26:04] 2025-10-13 06:25:07,354 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 02:26:04] 2025-10-13 06:25:07,358 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-13 02:26:04] 2025-10-13 06:25:07,361 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841068855/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 02:26:04] 2025-10-13 06:25:07,361 | INFO     | extracted standard info from prmon json
[2025-10-13 02:26:04] 2025-10-13 06:25:07,361 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 02:26:04] 2025-10-13 06:25:07,361 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 02:26:04] 2025-10-13 06:25:07,362 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 02:26:04] 2025-10-13 06:25:07,362 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 02:26:04] 2025-10-13 06:25:07,363 | INFO     | fitting pss+swap vs Time
[2025-10-13 02:26:04] 2025-10-13 06:25:07,364 | INFO     | sum of square deviations: 97479037.0
[2025-10-13 02:26:04] 2025-10-13 06:25:07,364 | INFO     | sum of deviations: 1826793595.9999998
[2025-10-13 02:26:04] 2025-10-13 06:25:07,364 | INFO     | mean x: 1760334508.5
[2025-10-13 02:26:04] 2025-10-13 06:25:07,364 | INFO     | mean y: 2717475.588235294
[2025-10-13 02:26:04] 2025-10-13 06:25:07,364 | INFO     | -- intersect: -32986609316.238884
[2025-10-13 02:26:04] 2025-10-13 06:25:07,364 | INFO     | intersect: -32986609316.238884
[2025-10-13 02:26:04] 2025-10-13 06:25:07,365 | INFO     | chi2: 0.0029620255221461875
[2025-10-13 02:26:04] 2025-10-13 06:25:07,365 | INFO     | -- intersect: -32986609316.238884
[2025-10-13 02:26:04] 2025-10-13 06:25:07,365 | INFO     | current memory leak: 18.74 B/s (using 68 data points, chi2=0.00)
[2025-10-13 02:26:04] 2025-10-13 06:25:07,365 | INFO     | could have reported an average CPU frequency of 2056 MHz (6 samples)
[2025-10-13 02:26:04] 2025-10-13 06:25:07,365 | INFO     | ..............................
[2025-10-13 02:26:04] 2025-10-13 06:25:07,365 | INFO     | . Timing measurements:
[2025-10-13 02:26:04] 2025-10-13 06:25:07,365 | INFO     | . get job = 0 s
[2025-10-13 02:26:04] 2025-10-13 06:25:07,366 | INFO     | . initial setup = 2 s
[2025-10-13 02:26:04] 2025-10-13 06:25:07,366 | INFO     | . payload setup = 7 s
[2025-10-13 02:26:04] 2025-10-13 06:25:07,366 | INFO     | . stage-in = 0 s
[2025-10-13 02:26:04] 2025-10-13 06:25:07,366 | INFO     | . payload execution = 4541 s
[2025-10-13 02:26:04] 2025-10-13 06:25:07,366 | INFO     | . stage-out = 0 s
[2025-10-13 02:26:04] 2025-10-13 06:25:07,366 | INFO     | . log creation = 0 s
[2025-10-13 02:26:04] 2025-10-13 06:25:07,366 | INFO     | ..............................
[2025-10-13 02:26:04] 2025-10-13 06:25:07,447 | INFO     | 
[2025-10-13 02:26:04] 2025-10-13 06:25:07,447 | INFO     | job summary report
[2025-10-13 02:26:04] 2025-10-13 06:25:07,447 | INFO     | --------------------------------------------------
[2025-10-13 02:26:04] 2025-10-13 06:25:07,447 | INFO     | PanDA job id: 6841068855
[2025-10-13 02:26:04] 2025-10-13 06:25:07,448 | INFO     | task id: 46676269
[2025-10-13 02:26:04] 2025-10-13 06:25:07,448 | INFO     | errors: (none)
[2025-10-13 02:26:04] 2025-10-13 06:25:07,448 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 02:26:04] 2025-10-13 06:25:07,448 | INFO     | pilot state: finished 
[2025-10-13 02:26:04] 2025-10-13 06:25:07,448 | INFO     | transexitcode: 0
[2025-10-13 02:26:04] 2025-10-13 06:25:07,448 | INFO     | exeerrorcode: 0
[2025-10-13 02:26:04] 2025-10-13 06:25:07,449 | INFO     | exeerrordiag: 
[2025-10-13 02:26:04] 2025-10-13 06:25:07,449 | INFO     | exitcode: 0
[2025-10-13 02:26:04] 2025-10-13 06:25:07,449 | INFO     | exitmsg: OK
[2025-10-13 02:26:04] 2025-10-13 06:25:07,449 | INFO     | cpuconsumptiontime: 47176 s
[2025-10-13 02:26:04] 2025-10-13 06:25:07,449 | INFO     | nevents: 400
[2025-10-13 02:26:04] 2025-10-13 06:25:07,449 | INFO     | neventsw: 0
[2025-10-13 02:26:04] 2025-10-13 06:25:07,449 | INFO     | pid: 1162
[2025-10-13 02:26:04] 2025-10-13 06:25:07,450 | INFO     | pgrp: 1162
[2025-10-13 02:26:04] 2025-10-13 06:25:07,450 | INFO     | corecount: 12
[2025-10-13 02:26:04] 2025-10-13 06:25:07,450 | INFO     | event service: False
[2025-10-13 02:26:04] 2025-10-13 06:25:07,450 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 12: 2349175, 4552: 2375279, 4553: 2384277, 4555: 2384461, 4560: 2384655}
[2025-10-13 02:26:04] 2025-10-13 06:25:07,450 | INFO     | --------------------------------------------------
[2025-10-13 02:26:04] 2025-10-13 06:25:07,450 | INFO     | 
[2025-10-13 02:26:04] 2025-10-13 06:25:07,450 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 02:26:04] 2025-10-13 06:25:07,475 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,476 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,476 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,476 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,476 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,476 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,477 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,477 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,477 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,477 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,477 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,477 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,478 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,478 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,478 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,478 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,478 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,478 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:26:04] 2025-10-13 06:25:07,479 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,479 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:26:04] 2025-10-13 06:25:07,479 | INFO     | job 6841068855 has completed (purged errors)
[2025-10-13 02:26:04] 2025-10-13 06:25:07,479 | INFO     | overall cleanup function is called
[2025-10-13 02:26:04] 2025-10-13 06:25:08,487 | INFO     | --- collectZombieJob: --- 10, [1162]
[2025-10-13 02:26:04] 2025-10-13 06:25:08,487 | INFO     | zombie collector waiting for pid 1162
[2025-10-13 02:26:04] 2025-10-13 06:25:08,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:26:04] 2025-10-13 06:25:08,487 | INFO     | collected zombie processes
[2025-10-13 02:26:04] 2025-10-13 06:25:08,487 | INFO     | will attempt to kill all subprocesses of pid=1162
[2025-10-13 02:26:04] 2025-10-13 06:25:08,577 | INFO     | process IDs to be killed: [1162] (in reverse order)
[2025-10-13 02:26:04] 2025-10-13 06:25:08,630 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:26:04] 2025-10-13 06:25:08,631 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:26:04] 2025-10-13 06:25:08,635 | INFO     | did not find any defunct processes belonging to 1162
[2025-10-13 02:26:04] 2025-10-13 06:25:08,638 | INFO     | did not find any defunct processes belonging to 1162
[2025-10-13 02:26:04] 2025-10-13 06:25:08,638 | INFO     | ready for new job
[2025-10-13 02:26:04] 2025-10-13 06:25:08,639 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:26:04] 2025-10-13 06:25:08,640 | INFO     | ***************************************
[2025-10-13 02:26:04] 2025-10-13 06:25:08,640 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:26:04] 2025-10-13 06:25:08,640 | INFO     | ***************************************
[2025-10-13 02:26:04] 2025-10-13 06:25:08,641 | INFO     | 
[2025-10-13 02:26:04] 2025-10-13 06:25:08,641 | INFO     | architecture information:
[2025-10-13 02:26:04] 2025-10-13 06:25:08,642 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:26:04] 2025-10-13 06:25:08,657 | INFO     | cat /etc/os-release:
[2025-10-13 02:26:04] NAME="CentOS Linux"
[2025-10-13 02:26:04] VERSION="7 (Core)"
[2025-10-13 02:26:04] ID="centos"
[2025-10-13 02:26:04] ID_LIKE="rhel fedora"
[2025-10-13 02:26:04] VERSION_ID="7"
[2025-10-13 02:26:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:26:04] ANSI_COLOR="0;31"
[2025-10-13 02:26:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:26:04] HOME_URL="https://www.centos.org/"
[2025-10-13 02:26:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:26:04] 
[2025-10-13 02:26:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:26:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:26:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:26:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:26:04] 
[2025-10-13 02:26:04] 2025-10-13 06:25:08,657 | INFO     | ***************************************
[2025-10-13 02:26:04] 2025-10-13 06:25:09,160 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 02:26:04] 2025-10-13 06:25:09,177 | INFO     | sufficient remaining disk space (29359079424 B)
[2025-10-13 02:26:04] 2025-10-13 06:25:09,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:26:04] 2025-10-13 06:25:09,178 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:26:04] 2025-10-13 06:25:09,178 | INFO     | update_server=False
[2025-10-13 02:26:04] 2025-10-13 06:25:09,178 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:26:04] 2025-10-13 06:25:09,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:26:04] 2025-10-13 06:25:09,179 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:26:04] 2025-10-13 06:25:09,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:26:04] 2025-10-13 06:25:09,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:26:04] 2025-10-13 06:25:09,283 | INFO     | aborting loop
[2025-10-13 02:26:04] 2025-10-13 06:25:09,691 | INFO     | all payload control threads have been joined
[2025-10-13 02:26:04] 2025-10-13 06:25:09,730 | INFO     | all data control threads have been joined
[2025-10-13 02:26:04] 2025-10-13 06:25:10,184 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:10,185 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:10,272 | INFO     | [job] validate thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:10,275 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:10,289 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:10,354 | INFO     | all job control threads have been joined
[2025-10-13 02:26:04] 2025-10-13 06:25:10,380 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:10,459 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:10,696 | INFO     | [payload] control thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:10,736 | INFO     | [data] control thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:10,767 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:10,796 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:11,096 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:11,183 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:11,359 | INFO     | [job] control thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:11,490 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:13,184 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:26:04] 2025-10-13 06:25:39,475 | INFO     | PID=25433 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 02:26:04] 2025-10-13 06:25:39,475 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:26:04] 2025-10-13 06:25:39,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:26:04] 2025-10-13 06:25:39,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:26:04] 2025-10-13 06:25:58,761 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:26:04] 2025-10-13 06:25:59,529 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140355000215360)>', '<ExcThread(monitor, started 140354430957312)>']
[2025-10-13 02:26:04] 2025-10-13 06:25:59,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:26:04] 2025-10-13 06:25:59,555 | INFO     | [monitor] control thread has ended
[2025-10-13 02:26:04] 2025-10-13 06:26:04,540 | INFO     | all workflow threads have been joined
[2025-10-13 02:26:04] 2025-10-13 06:26:04,541 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:26:04] 2025-10-13 06:26:04,541 | INFO     | traces error code: 0
[2025-10-13 02:26:04] 2025-10-13 06:26:04,541 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:26:04] 2025-10-13 06:26:04,625 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:26:04] 2025-10-13 06:26:04,628 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:26:04] 2025-10-13 06:26:04,632 [wrapper] pilotpid: 25433
[2025-10-13 02:26:04] 2025-10-13 06:26:04,636 [wrapper] Pilot exit status: 0
[2025-10-13 02:26:04] 2025-10-13 06:26:04,651 [wrapper] pandaids: 6841068855
[2025-10-13 02:26:04] 2025-10-13 06:26:04,698 [wrapper] cleanup supervisor_pilot 25860 25434
[2025-10-13 02:26:04] 2025-10-13 06:26:04,702 [wrapper] Test setup, not cleaning
[2025-10-13 02:26:04] 2025-10-13 06:26:04,706 [wrapper] apfmon messages muted
[2025-10-13 02:26:04] 2025-10-13 06:26:04,710 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:26:04] 2025-10-13 06:26:04,714 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:26:04]  *** Error codes and diagnostics ***
[2025-10-13 02:26:04]     "exeErrorCode": 0,
[2025-10-13 02:26:04]     "exeErrorDiag": "",
[2025-10-13 02:26:04]     "pilotErrorCode": 0,
[2025-10-13 02:26:04]     "pilotErrorDiag": "",
[2025-10-13 02:26:04]  *** Listing of results directory ***
[2025-10-13 02:26:04] total 414188
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:11 pilot3.tar.gz
[2025-10-13 02:26:04] -rwx------ 1 boincer umatlas     36292 Oct 12 20:21 runpilot2-wrapper.sh
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 20:21 queuedata.json
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas       100 Oct 13 01:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:26:04] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 01:08 run_atlas
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas       105 Oct 13 01:08 job.xml
[2025-10-13 02:26:04] -rw-r--r-- 2 boincer umatlas 222076128 Oct 13 01:08 EVNT.46676267._004690.pool.root.1
[2025-10-13 02:26:04] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:08 start_atlas.sh
[2025-10-13 02:26:04] drwxrwx--x 2 boincer umatlas      4096 Oct 13 01:08 shared
[2025-10-13 02:26:04] -rw-r--r-- 2 boincer umatlas    569680 Oct 13 01:08 input.tar.gz
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas         0 Oct 13 01:08 boinc_lockfile
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 01:08 pandaJob.out
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas    974365 Oct 13 01:08 agis_schedconf.cvmfs.json
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas   1560580 Oct 13 01:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:26:04] drwx------ 5 boincer umatlas      4096 Oct 13 01:08 pilot3
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 02:20 init_data.xml
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas 196059818 Oct 13 02:24 HITS.46676269._093091.pool.root.1
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas        95 Oct 13 02:24 pilot_heartbeat.json
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas      1049 Oct 13 02:24 memory_monitor_summary.json
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas    388976 Oct 13 02:25 log.46676269._093091.job.log.tgz.1
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas       530 Oct 13 02:25 boinc_task_state.xml
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas      7851 Oct 13 02:25 heartbeat.json
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 02:25 boinc_mmap_file
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas        27 Oct 13 02:25 wrapper_checkpoint.txt
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas      4746 Oct 13 02:26 pilotlog.txt
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas    661883 Oct 13 02:26 log.46676269._093091.job.log.1
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas       357 Oct 13 02:26 output.list
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas       620 Oct 13 02:26 runtime_log
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas   1064960 Oct 13 02:26 result.tar.gz
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 02:26 runtime_log.err
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas       659 Oct 13 02:26 PnuNDmvULS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGNVMDmLptJ7n.diag
[2025-10-13 02:26:04] -rw-r--r-- 1 boincer umatlas     21803 Oct 13 02:26 stderr.txt
[2025-10-13 02:26:04] HITS file was successfully produced:
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas 196059818 Oct 13 02:24 shared/HITS.pool.root.1
[2025-10-13 02:26:04]  *** Contents of shared directory: ***
[2025-10-13 02:26:04] total 409960
[2025-10-13 02:26:04] -rw-r--r-- 2 boincer umatlas 222076128 Oct 13 01:08 ATLAS.root_0
[2025-10-13 02:26:04] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 01:08 start_atlas.sh
[2025-10-13 02:26:04] -rw-r--r-- 2 boincer umatlas    569680 Oct 13 01:08 input.tar.gz
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas 196059818 Oct 13 02:24 HITS.pool.root.1
[2025-10-13 02:26:04] -rw------- 1 boincer umatlas   1064960 Oct 13 02:26 result.tar.gz
02:26:06 (21749): run_atlas exited; CPU time 47158.946135
02:26:06 (21749): called boinc_finish(0)

</stderr_txt>
]]>

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