Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:54:40 (1582852): wrapper (7.7.26015): starting
01:54:40 (1582852): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 01:54:40] Arguments: --nthreads 8
[2025-10-13 01:54:40] Threads: 8
[2025-10-13 01:54:40] Checking for CVMFS
[2025-10-13 01:54:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:54:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:54:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:54:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:54:41] 2.13.2.0 9460 35275 230512 151650 0 57 31821116 32935937 2765 16776704 0 103704553 99.705 79615418 30073 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 01:54:41] CVMFS is ok
[2025-10-13 01:54:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:54:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:54:41] Further information can be found at the LHC@home message board.
[2025-10-13 01:54:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:54:41] Checking for apptainer binary...
[2025-10-13 01:54:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:54:41] Running /usr/bin/apptainer --version
[2025-10-13 01:54:41] apptainer version 1.4.3-1.el9
[2025-10-13 01:54:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:54:41] c-4-11.aglt2.org
[2025-10-13 01:54:41] apptainer works
[2025-10-13 01:54:41] Set ATHENA_PROC_NUMBER=8
[2025-10-13 01:54:41] Set ATHENA_CORE_NUMBER=8
[2025-10-13 01:54:41] Starting ATLAS job with PandaID=6841068787
[2025-10-13 01:54:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:20:04]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:20:04]  scope=mc23_13p6TeV
[2025-10-13 03:20:04]  status=None
[2025-10-13 03:20:04]  status_code=0
[2025-10-13 03:20:04]  storage_token=
[2025-10-13 03:20:04]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6841068787/log.46676269._093023.job.log.tgz.1
[2025-10-13 03:20:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/0f/log.46676269._093023.job.log.tgz.1
[2025-10-13 03:20:04]  workdir=None
[2025-10-13 03:20:04] ]
[2025-10-13 03:20:04] 2025-10-13 07:19:28,695 | INFO     | transferring file log.46676269._093023.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6841068787/log.46676269._093023.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 03:20:04] 2025-10-13 07:19:28,696 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6841068787/log.46676269._093023.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._093023.job
[2025-10-13 03:20:04] 2025-10-13 07:19:28,712 | INFO     | adding to output.list: log.46676269._093023.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/0f/log.46676269._093023.job.log.tg
[2025-10-13 03:20:04] 2025-10-13 07:19:28,713 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 03:20:04] 2025-10-13 07:19:28,713 | INFO     | summary of transferred files:
[2025-10-13 03:20:04] 2025-10-13 07:19:28,713 | INFO     |  -- lfn=log.46676269._093023.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 03:20:04] 2025-10-13 07:19:28,713 | INFO     | stage-out finished correctly
[2025-10-13 03:20:04] 2025-10-13 07:19:28,766 | INFO     | time since job start (5077s) is within the limit (172800.0s)
[2025-10-13 03:20:04] 2025-10-13 07:19:28,824 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 03:20:04] 2025-10-13 07:19:28,924 | INFO     | job 6841068787 has state=finished
[2025-10-13 03:20:04] 2025-10-13 07:19:28,925 | INFO     | preparing for final server update for job 6841068787 in state='finished'
[2025-10-13 03:20:04] 2025-10-13 07:19:28,926 | INFO     | this job has now completed (state=finished)
[2025-10-13 03:20:04] 2025-10-13 07:19:28,926 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 03:20:04] 2025-10-13 07:19:28,926 | INFO     | log transfer has been attempted: DONE
[2025-10-13 03:20:04] 2025-10-13 07:19:28,926 | INFO     | job 6841068787 has finished - writing final server update
[2025-10-13 03:20:04] 2025-10-13 07:19:28,927 | INFO     | total number of processed events: 400 (read)
[2025-10-13 03:20:04] 2025-10-13 07:19:28,927 | INFO     | executing command: lscpu
[2025-10-13 03:20:04] 2025-10-13 07:19:28,977 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 03:20:04] 2025-10-13 07:19:30,782 | INFO     | time since job start (5079s) is within the limit (172800.0s)
[2025-10-13 03:20:04] 2025-10-13 07:19:31,616 | WARNING  | process 1594933 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 03:20:04] 2025-10-13 07:19:31,616 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6841068787/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:20:04] 2025-10-13 07:19:31,761 | INFO     | number of running child processes to parent process 1594933: 1
[2025-10-13 03:20:04] 2025-10-13 07:19:31,761 | INFO     | maximum number of monitored processes: 6
[2025-10-13 03:20:04] 2025-10-13 07:19:31,877 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 03:20:04] 2025-10-13 07:19:31,894 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2880.0672250000016
[2025-10-13 03:20:04] 2025-10-13 07:19:31,901 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6841068787/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:20:04] 2025-10-13 07:19:31,902 | INFO     | extracted standard info from prmon json
[2025-10-13 03:20:04] 2025-10-13 07:19:31,902 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:20:04] 2025-10-13 07:19:31,903 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:20:04] 2025-10-13 07:19:31,903 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:20:04] 2025-10-13 07:19:31,903 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:20:04] 2025-10-13 07:19:31,906 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:20:04] 2025-10-13 07:19:31,906 | INFO     | sum of square deviations: 136095575.0
[2025-10-13 03:20:04] 2025-10-13 07:19:31,906 | INFO     | sum of deviations: -9823810819.000004
[2025-10-13 03:20:04] 2025-10-13 07:19:31,907 | INFO     | mean x: 1760337507.5
[2025-10-13 03:20:04] 2025-10-13 07:19:31,907 | INFO     | mean y: 2272855.8684210526
[2025-10-13 03:20:04] 2025-10-13 07:19:31,907 | INFO     | -- intersect: 127069024668.11508
[2025-10-13 03:20:04] 2025-10-13 07:19:31,907 | INFO     | intersect: 127069024668.11508
[2025-10-13 03:20:04] 2025-10-13 07:19:31,907 | INFO     | chi2: 0.06621097589756428
[2025-10-13 03:20:04] 2025-10-13 07:19:31,908 | INFO     | -- intersect: 127069024668.11508
[2025-10-13 03:20:04] 2025-10-13 07:19:31,908 | INFO     | current memory leak: -72.18 B/s (using 76 data points, chi2=0.07)
[2025-10-13 03:20:04] 2025-10-13 07:19:31,908 | INFO     | could have reported an average CPU frequency of 2820 MHz (6 samples)
[2025-10-13 03:20:04] 2025-10-13 07:19:31,909 | INFO     | ..............................
[2025-10-13 03:20:04] 2025-10-13 07:19:31,909 | INFO     | . Timing measurements:
[2025-10-13 03:20:04] 2025-10-13 07:19:31,909 | INFO     | . get job = 0 s
[2025-10-13 03:20:04] 2025-10-13 07:19:31,909 | INFO     | . initial setup = 2 s
[2025-10-13 03:20:04] 2025-10-13 07:19:31,909 | INFO     | . payload setup = 4 s
[2025-10-13 03:20:04] 2025-10-13 07:19:31,910 | INFO     | . stage-in = 0 s
[2025-10-13 03:20:04] 2025-10-13 07:19:31,910 | INFO     | . payload execution = 5051 s
[2025-10-13 03:20:04] 2025-10-13 07:19:31,910 | INFO     | . stage-out = 0 s
[2025-10-13 03:20:04] 2025-10-13 07:19:31,910 | INFO     | . log creation = 0 s
[2025-10-13 03:20:04] 2025-10-13 07:19:31,910 | INFO     | ..............................
[2025-10-13 03:20:04] 2025-10-13 07:19:32,018 | INFO     | 
[2025-10-13 03:20:04] 2025-10-13 07:19:32,018 | INFO     | job summary report
[2025-10-13 03:20:04] 2025-10-13 07:19:32,018 | INFO     | --------------------------------------------------
[2025-10-13 03:20:04] 2025-10-13 07:19:32,018 | INFO     | PanDA job id: 6841068787
[2025-10-13 03:20:04] 2025-10-13 07:19:32,019 | INFO     | task id: 46676269
[2025-10-13 03:20:04] 2025-10-13 07:19:32,019 | INFO     | errors: (none)
[2025-10-13 03:20:04] 2025-10-13 07:19:32,019 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:20:04] 2025-10-13 07:19:32,019 | INFO     | pilot state: finished 
[2025-10-13 03:20:04] 2025-10-13 07:19:32,019 | INFO     | transexitcode: 0
[2025-10-13 03:20:04] 2025-10-13 07:19:32,019 | INFO     | exeerrorcode: 0
[2025-10-13 03:20:04] 2025-10-13 07:19:32,020 | INFO     | exeerrordiag: 
[2025-10-13 03:20:04] 2025-10-13 07:19:32,020 | INFO     | exitcode: 0
[2025-10-13 03:20:04] 2025-10-13 07:19:32,020 | INFO     | exitmsg: OK
[2025-10-13 03:20:04] 2025-10-13 07:19:32,020 | INFO     | cpuconsumptiontime: 37682 s
[2025-10-13 03:20:04] 2025-10-13 07:19:32,020 | INFO     | nevents: 400
[2025-10-13 03:20:04] 2025-10-13 07:19:32,021 | INFO     | neventsw: 0
[2025-10-13 03:20:04] 2025-10-13 07:19:32,021 | INFO     | pid: 1594933
[2025-10-13 03:20:04] 2025-10-13 07:19:32,021 | INFO     | pgrp: 1594933
[2025-10-13 03:20:04] 2025-10-13 07:19:32,021 | INFO     | corecount: 8
[2025-10-13 03:20:04] 2025-10-13 07:19:32,021 | INFO     | event service: False
[2025-10-13 03:20:04] 2025-10-13 07:19:32,021 | INFO     | sizes: {0: 2348029, 1: 2348885, 5: 2349147, 12: 2349203, 5060: 2375618, 5061: 2375617, 5063: 2384855, 5066: 2384993}
[2025-10-13 03:20:04] 2025-10-13 07:19:32,022 | INFO     | --------------------------------------------------
[2025-10-13 03:20:04] 2025-10-13 07:19:32,022 | INFO     | 
[2025-10-13 03:20:04] 2025-10-13 07:19:32,022 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 03:20:04] 2025-10-13 07:19:32,038 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,039 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,039 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,039 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,039 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,039 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,040 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,040 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,040 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,040 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,040 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,041 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,041 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:20:04] 2025-10-13 07:19:32,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,041 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:20:04] 2025-10-13 07:19:32,042 | INFO     | job 6841068787 has completed (purged errors)
[2025-10-13 03:20:04] 2025-10-13 07:19:32,042 | INFO     | overall cleanup function is called
[2025-10-13 03:20:04] 2025-10-13 07:19:32,206 | INFO     | PID=1586545 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 03:20:04] 2025-10-13 07:19:32,206 | INFO     | .. there are 4 such processes running
[2025-10-13 03:20:04] 2025-10-13 07:19:33,048 | INFO     | --- collectZombieJob: --- 10, [1594933]
[2025-10-13 03:20:04] 2025-10-13 07:19:33,048 | INFO     | zombie collector waiting for pid 1594933
[2025-10-13 03:20:04] 2025-10-13 07:19:33,048 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:20:04] 2025-10-13 07:19:33,048 | INFO     | collected zombie processes
[2025-10-13 03:20:04] 2025-10-13 07:19:33,048 | INFO     | will attempt to kill all subprocesses of pid=1594933
[2025-10-13 03:20:04] 2025-10-13 07:19:33,291 | INFO     | process IDs to be killed: [1594933] (in reverse order)
[2025-10-13 03:20:04] 2025-10-13 07:19:33,358 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:20:04] 2025-10-13 07:19:33,358 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:20:04] 2025-10-13 07:19:33,366 | INFO     | did not find any defunct processes belonging to 1594933
[2025-10-13 03:20:04] 2025-10-13 07:19:33,372 | INFO     | did not find any defunct processes belonging to 1594933
[2025-10-13 03:20:04] 2025-10-13 07:19:33,372 | INFO     | ready for new job
[2025-10-13 03:20:04] 2025-10-13 07:19:33,372 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:20:04] 2025-10-13 07:19:33,374 | INFO     | ***************************************
[2025-10-13 03:20:04] 2025-10-13 07:19:33,374 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:20:04] 2025-10-13 07:19:33,374 | INFO     | ***************************************
[2025-10-13 03:20:04] 2025-10-13 07:19:33,374 | INFO     | 
[2025-10-13 03:20:04] 2025-10-13 07:19:33,389 | INFO     | architecture information:
[2025-10-13 03:20:04] 2025-10-13 07:19:33,390 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:20:04] 2025-10-13 07:19:33,403 | INFO     | cat /etc/os-release:
[2025-10-13 03:20:04] NAME="CentOS Linux"
[2025-10-13 03:20:04] VERSION="7 (Core)"
[2025-10-13 03:20:04] ID="centos"
[2025-10-13 03:20:04] ID_LIKE="rhel fedora"
[2025-10-13 03:20:04] VERSION_ID="7"
[2025-10-13 03:20:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:20:04] ANSI_COLOR="0;31"
[2025-10-13 03:20:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:20:04] HOME_URL="https://www.centos.org/"
[2025-10-13 03:20:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:20:04] 
[2025-10-13 03:20:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:20:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:20:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:20:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:20:04] 
[2025-10-13 03:20:04] 2025-10-13 07:19:33,404 | INFO     | ***************************************
[2025-10-13 03:20:04] 2025-10-13 07:19:33,907 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 03:20:04] 2025-10-13 07:19:33,921 | INFO     | sufficient remaining disk space (74095525888 B)
[2025-10-13 03:20:04] 2025-10-13 07:19:33,921 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:20:04] 2025-10-13 07:19:33,922 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:20:04] 2025-10-13 07:19:33,922 | INFO     | update_server=False
[2025-10-13 03:20:04] 2025-10-13 07:19:33,922 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:20:04] 2025-10-13 07:19:33,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:20:04] 2025-10-13 07:19:34,265 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 03:20:04] 2025-10-13 07:19:34,265 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 03:20:04] 2025-10-13 07:19:34,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:20:04] 2025-10-13 07:19:34,265 | INFO     | will abort loop
[2025-10-13 03:20:04] 2025-10-13 07:19:34,328 | INFO     | all job control threads have been joined
[2025-10-13 03:20:04] 2025-10-13 07:19:34,331 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:20:04] 2025-10-13 07:19:34,879 | INFO     | all payload control threads have been joined
[2025-10-13 03:20:04] 2025-10-13 07:19:34,926 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:34,928 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:34,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:20:04] 2025-10-13 07:19:34,940 | INFO     | all data control threads have been joined
[2025-10-13 03:20:04] 2025-10-13 07:19:35,271 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:35,333 | INFO     | [job] control thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:35,341 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:35,458 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:35,798 | INFO     | [job] validate thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:35,882 | INFO     | [payload] control thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:35,935 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:35,945 | INFO     | [data] control thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:36,107 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:36,337 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:36,342 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:36,362 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:38,936 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:44,712 | INFO     | job.realtimelogging is not enabled
[2025-10-13 03:20:04] 2025-10-13 07:19:45,717 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:20:04] 2025-10-13 07:19:58,594 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:20:04] 2025-10-13 07:19:59,598 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280055969600)>', '<ExcThread(monitor, started 140279554217728)>']
[2025-10-13 03:20:04] 2025-10-13 07:20:04,590 | INFO     | PID=1586545 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:20:04] 2025-10-13 07:20:04,590 | INFO     | .. there are 4 such processes running
[2025-10-13 03:20:04] 2025-10-13 07:20:04,590 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:20:04] 2025-10-13 07:20:04,591 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:20:04] 2025-10-13 07:20:04,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:20:04] 2025-10-13 07:20:04,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:20:04] 2025-10-13 07:20:04,591 | INFO     | [monitor] control thread has ended
[2025-10-13 03:20:04] 2025-10-13 07:20:04,623 | INFO     | all workflow threads have been joined
[2025-10-13 03:20:04] 2025-10-13 07:20:04,623 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:20:04] 2025-10-13 07:20:04,623 | INFO     | traces error code: 0
[2025-10-13 03:20:04] 2025-10-13 07:20:04,624 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:20:04] 2025-10-13 07:20:04,735 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:20:04] 2025-10-13 07:20:04,737 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:20:04] 2025-10-13 07:20:04,740 [wrapper] pilotpid: 1586545
[2025-10-13 03:20:04] 2025-10-13 07:20:04,742 [wrapper] Pilot exit status: 0
[2025-10-13 03:20:04] 2025-10-13 07:20:04,750 [wrapper] pandaids: 6841068787
[2025-10-13 03:20:04] 2025-10-13 07:20:04,796 [wrapper] cleanup supervisor_pilot 1779013 1586546
[2025-10-13 03:20:04] 2025-10-13 07:20:04,798 [wrapper] Test setup, not cleaning
[2025-10-13 03:20:04] 2025-10-13 07:20:04,800 [wrapper] apfmon messages muted
[2025-10-13 03:20:04] 2025-10-13 07:20:04,802 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:20:04] 2025-10-13 07:20:04,805 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:20:04]  *** Error codes and diagnostics ***
[2025-10-13 03:20:04]     "exeErrorCode": 0,
[2025-10-13 03:20:04]     "exeErrorDiag": "",
[2025-10-13 03:20:04]     "pilotErrorCode": 0,
[2025-10-13 03:20:04]     "pilotErrorDiag": "",
[2025-10-13 03:20:04]  *** Listing of results directory ***
[2025-10-13 03:20:04] total 405520
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 20:11 pilot3.tar.gz
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 20:19 queuedata.json
[2025-10-13 03:20:04] -rwx------. 1 boincer umatlas     36292 Oct 12 20:20 runpilot2-wrapper.sh
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas       100 Oct 13 01:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:20:04] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 01:54 run_atlas
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas       105 Oct 13 01:54 job.xml
[2025-10-13 03:20:04] -rw-r--r--. 2 boincer umatlas 219318402 Oct 13 01:54 EVNT.46676267._004687.pool.root.1
[2025-10-13 03:20:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 01:54 start_atlas.sh
[2025-10-13 03:20:04] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 01:54 shared
[2025-10-13 03:20:04] -rw-r--r--. 2 boincer umatlas    569680 Oct 13 01:54 input.tar.gz
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas         0 Oct 13 01:54 boinc_lockfile
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 01:54 pandaJob.out
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas    973230 Oct 13 01:54 agis_schedconf.cvmfs.json
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas   1560580 Oct 13 01:54 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:20:04] drwx------. 5 boincer umatlas      4096 Oct 13 01:54 pilot3
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas      6661 Oct 13 03:11 init_data.xml
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas 189842720 Oct 13 03:18 HITS.46676269._093023.pool.root.1
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas       529 Oct 13 03:19 boinc_task_state.xml
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas        95 Oct 13 03:19 pilot_heartbeat.json
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas      1033 Oct 13 03:19 memory_monitor_summary.json
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas    345107 Oct 13 03:19 log.46676269._093023.job.log.tgz.1
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas      7810 Oct 13 03:19 heartbeat.json
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas        27 Oct 13 03:20 wrapper_checkpoint.txt
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 03:20 boinc_mmap_file
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas      5081 Oct 13 03:20 pilotlog.txt
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas    748163 Oct 13 03:20 log.46676269._093023.job.log.1
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas       357 Oct 13 03:20 output.list
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas       620 Oct 13 03:20 runtime_log
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas   1116160 Oct 13 03:20 result.tar.gz
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas       649 Oct 13 03:20 7cUKDmiTLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmWMVMDmBRaECn.diag
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas      8693 Oct 13 03:20 runtime_log.err
[2025-10-13 03:20:04] -rw-r--r--. 1 boincer umatlas     21980 Oct 13 03:20 stderr.txt
[2025-10-13 03:20:04] HITS file was successfully produced:
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas 189842720 Oct 13 03:18 shared/HITS.pool.root.1
[2025-10-13 03:20:04]  *** Contents of shared directory: ***
[2025-10-13 03:20:04] total 401248
[2025-10-13 03:20:04] -rw-r--r--. 2 boincer umatlas 219318402 Oct 13 01:54 ATLAS.root_0
[2025-10-13 03:20:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 01:54 start_atlas.sh
[2025-10-13 03:20:04] -rw-r--r--. 2 boincer umatlas    569680 Oct 13 01:54 input.tar.gz
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas 189842720 Oct 13 03:18 HITS.pool.root.1
[2025-10-13 03:20:04] -rw-------. 1 boincer umatlas   1116160 Oct 13 03:20 result.tar.gz
03:20:06 (1582852): run_atlas exited; CPU time 37823.995716
03:20:06 (1582852): called boinc_finish(0)

</stderr_txt>
]]>

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