Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:51:01 (3873495): wrapper (7.7.26015): starting
15:51:01 (3873495): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 15:51:01] Arguments: --nthreads 4
[2025-10-13 15:51:01] Threads: 4
[2025-10-13 15:51:01] Checking for CVMFS
[2025-10-13 15:51:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:51:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:51:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:51:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:51:01] 2.9.2.0 1854055 5827 99792 151662 2 57 29707417 36864001 0 130560 0 5239071 99.992 197655 905 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 15:51:01] CVMFS is ok
[2025-10-13 15:51:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:51:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:51:01] Further information can be found at the LHC@home message board.
[2025-10-13 15:51:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:51:01] Checking for apptainer binary...
[2025-10-13 15:51:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:51:01] Running /usr/bin/apptainer --version
[2025-10-13 15:51:01] apptainer version 1.4.1-1.1
[2025-10-13 15:51:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:51:01] thA332a
[2025-10-13 15:51:01] apptainer works
[2025-10-13 15:51:01] Set ATHENA_PROC_NUMBER=4
[2025-10-13 15:51:01] Set ATHENA_CORE_NUMBER=4
[2025-10-13 15:51:01] Starting ATLAS job with PandaID=6840849964
[2025-10-13 15:51:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:02:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:02:21] 2025-10-13 15:01:49,170 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:02:21] 2025-10-13 15:01:49,170 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:02:21] 2025-10-13 15:01:49,170 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:02:21] 2025-10-13 15:01:49,170 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:02:21] 2025-10-13 15:01:49,170 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:02:21] 2025-10-13 15:01:49,170 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:02:21] 2025-10-13 15:01:49,170 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:02:21] 2025-10-13 15:01:49,170 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:02:21] 2025-10-13 15:01:49,170 | INFO     | job 6840849964 has completed (purged errors)
[2025-10-13 17:02:21] 2025-10-13 15:01:49,171 | INFO     | overall cleanup function is called
[2025-10-13 17:02:21] 2025-10-13 15:01:50,177 | INFO     | --- collectZombieJob: --- 10, [3883844]
[2025-10-13 17:02:21] 2025-10-13 15:01:50,177 | INFO     | zombie collector waiting for pid 3883844
[2025-10-13 17:02:21] 2025-10-13 15:01:50,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:02:21] 2025-10-13 15:01:50,178 | INFO     | collected zombie processes
[2025-10-13 17:02:21] 2025-10-13 15:01:50,178 | INFO     | will attempt to kill all subprocesses of pid=3883844
[2025-10-13 17:02:21] 2025-10-13 15:01:50,222 | INFO     | process IDs to be killed: [3883844] (in reverse order)
[2025-10-13 17:02:21] 2025-10-13 15:01:50,255 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:02:21] 2025-10-13 15:01:50,256 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:02:21] 2025-10-13 15:01:50,257 | INFO     | did not find any defunct processes belonging to 3883844
[2025-10-13 17:02:21] 2025-10-13 15:01:50,259 | INFO     | did not find any defunct processes belonging to 3883844
[2025-10-13 17:02:21] 2025-10-13 15:01:50,259 | INFO     | ready for new job
[2025-10-13 17:02:21] 2025-10-13 15:01:50,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:02:21] 2025-10-13 15:01:50,259 | INFO     | ***************************************
[2025-10-13 17:02:21] 2025-10-13 15:01:50,259 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:02:21] 2025-10-13 15:01:50,259 | INFO     | ***************************************
[2025-10-13 17:02:21] 2025-10-13 15:01:50,260 | INFO     | 
[2025-10-13 17:02:21] 2025-10-13 15:01:50,260 | INFO     | architecture information:
[2025-10-13 17:02:21] 2025-10-13 15:01:50,260 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:02:21] 2025-10-13 15:01:50,275 | INFO     | cat /etc/os-release:
[2025-10-13 17:02:21] NAME="CentOS Linux"
[2025-10-13 17:02:21] VERSION="7 (Core)"
[2025-10-13 17:02:21] ID="centos"
[2025-10-13 17:02:21] ID_LIKE="rhel fedora"
[2025-10-13 17:02:21] VERSION_ID="7"
[2025-10-13 17:02:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:02:21] ANSI_COLOR="0;31"
[2025-10-13 17:02:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:02:21] HOME_URL="https://www.centos.org/"
[2025-10-13 17:02:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:02:21] 
[2025-10-13 17:02:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:02:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:02:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:02:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:02:21] 
[2025-10-13 17:02:21] 2025-10-13 15:01:50,275 | INFO     | ***************************************
[2025-10-13 17:02:21] 2025-10-13 15:01:50,778 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 17:02:21] 2025-10-13 15:01:50,797 | INFO     | sufficient remaining disk space (330764910592 B)
[2025-10-13 17:02:21] 2025-10-13 15:01:50,797 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:02:21] 2025-10-13 15:01:50,797 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:02:21] 2025-10-13 15:01:50,797 | INFO     | update_server=False
[2025-10-13 17:02:21] 2025-10-13 15:01:50,797 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:02:21] 2025-10-13 15:01:50,797 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 17:02:21] 2025-10-13 15:01:50,797 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:02:21] 2025-10-13 15:01:50,797 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:02:21] 2025-10-13 15:01:50,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:02:21] 2025-10-13 15:01:50,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:02:21] 2025-10-13 15:01:50,798 | INFO     | aborting loop
[2025-10-13 17:02:21] 2025-10-13 15:01:50,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:02:21] 2025-10-13 15:01:50,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:02:21] 2025-10-13 15:01:51,304 | INFO     | all data control threads have been joined
[2025-10-13 17:02:21] 2025-10-13 15:01:51,803 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:51,803 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:51,803 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:52,074 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:52,155 | INFO     | all job control threads have been joined
[2025-10-13 17:02:21] 2025-10-13 15:01:52,161 | INFO     | all payload control threads have been joined
[2025-10-13 17:02:21] 2025-10-13 15:01:52,266 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:02:21] 2025-10-13 15:01:52,310 | INFO     | [data] control thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:52,346 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:52,843 | INFO     | [job] validate thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:52,869 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:52,964 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:53,071 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:53,161 | INFO     | [job] control thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:53,167 | INFO     | [payload] control thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:53,239 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:54,273 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:01:54,805 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:02:01,112 | INFO     | job.realtimelogging is not enabled
[2025-10-13 17:02:21] 2025-10-13 15:02:02,118 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:02:21] 2025-10-13 15:02:14,433 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:02:21] 2025-10-13 15:02:15,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140308711040832)>', '<ExcThread(monitor, started 140307765118720)>']
[2025-10-13 17:02:21] 2025-10-13 15:02:15,931 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:02:21] 2025-10-13 15:02:15,931 | INFO     | [monitor] control thread has ended
[2025-10-13 17:02:21] 2025-10-13 15:02:20,893 | INFO     | all workflow threads have been joined
[2025-10-13 17:02:21] 2025-10-13 15:02:20,893 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:02:21] 2025-10-13 15:02:20,893 | INFO     | traces error code: 0
[2025-10-13 17:02:21] 2025-10-13 15:02:20,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:02:21] 2025-10-13 15:02:20,975 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:02:21] 2025-10-13 15:02:20,979 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:02:21] 2025-10-13 15:02:20,983 [wrapper] pilotpid: 3877284
[2025-10-13 17:02:21] 2025-10-13 15:02:20,987 [wrapper] Pilot exit status: 0
[2025-10-13 17:02:21] 2025-10-13 15:02:20,999 [wrapper] pandaids: 6840849964
[2025-10-13 17:02:21] 2025-10-13 15:02:21,022 [wrapper] cleanup supervisor_pilot 3894615 3877285
[2025-10-13 17:02:21] 2025-10-13 15:02:21,026 [wrapper] Test setup, not cleaning
[2025-10-13 17:02:21] 2025-10-13 15:02:21,029 [wrapper] apfmon messages muted
[2025-10-13 17:02:21] 2025-10-13 15:02:21,033 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:02:21] 2025-10-13 15:02:21,037 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:02:21]  *** Error codes and diagnostics ***
[2025-10-13 17:02:21]     "exeErrorCode": 0,
[2025-10-13 17:02:21]     "exeErrorDiag": "",
[2025-10-13 17:02:21]     "pilotErrorCode": 0,
[2025-10-13 17:02:21]     "pilotErrorDiag": "",
[2025-10-13 17:02:21]  *** Listing of results directory ***
[2025-10-13 17:02:21] total 409112
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc    557409 Oct 12 23:57 pilot3.tar.gz
[2025-10-13 17:02:21] -rwx------ 1 boinc boinc     36292 Oct 13 00:03 runpilot2-wrapper.sh
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc      5112 Oct 13 00:03 queuedata.json
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:02:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:51 run_atlas
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:51 job.xml
[2025-10-13 17:02:21] -rw-r--r-- 2 boinc boinc 223560042 Oct 13 15:51 EVNT.46676267._004054.pool.root.1
[2025-10-13 17:02:21] -rw-r--r-- 2 boinc boinc    569680 Oct 13 15:51 input.tar.gz
[2025-10-13 17:02:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:51 start_atlas.sh
[2025-10-13 17:02:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 15:51 shared
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:51 boinc_setup_complete
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc      6371 Oct 13 15:51 init_data.xml
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:51 boinc_lockfile
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc      2550 Oct 13 15:51 pandaJob.out
[2025-10-13 17:02:21] -rw------- 1 boinc boinc    972489 Oct 13 15:51 agis_schedconf.cvmfs.json
[2025-10-13 17:02:21] -rw------- 1 boinc boinc   1560580 Oct 13 15:51 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:02:21] drwx------ 5 boinc boinc      4096 Oct 13 15:51 pilot3
[2025-10-13 17:02:21] -rw------- 1 boinc boinc 189722541 Oct 13 17:01 HITS.46676269._090556.pool.root.1
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc       529 Oct 13 17:01 boinc_task_state.xml
[2025-10-13 17:02:21] -rw------- 1 boinc boinc        95 Oct 13 17:01 pilot_heartbeat.json
[2025-10-13 17:02:21] -rw------- 1 boinc boinc      1033 Oct 13 17:01 memory_monitor_summary.json
[2025-10-13 17:02:21] -rw------- 1 boinc boinc    249749 Oct 13 17:01 log.46676269._090556.job.log.tgz.1
[2025-10-13 17:02:21] -rw------- 1 boinc boinc      7759 Oct 13 17:01 heartbeat.json
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:01 boinc_mmap_file
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:01 wrapper_checkpoint.txt
[2025-10-13 17:02:21] -rw------- 1 boinc boinc      4628 Oct 13 17:02 pilotlog.txt
[2025-10-13 17:02:21] -rw------- 1 boinc boinc    629795 Oct 13 17:02 log.46676269._090556.job.log.1
[2025-10-13 17:02:21] -rw------- 1 boinc boinc       357 Oct 13 17:02 output.list
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:02 runtime_log
[2025-10-13 17:02:21] -rw------- 1 boinc boinc    901120 Oct 13 17:02 result.tar.gz
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc      8782 Oct 13 17:02 runtime_log.err
[2025-10-13 17:02:21] -rw------- 1 boinc boinc       659 Oct 13 17:02 PgtKDmYLJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmg7UMDmzCoITm.diag
[2025-10-13 17:02:21] -rw-r--r-- 1 boinc boinc     11636 Oct 13 17:02 stderr.txt
[2025-10-13 17:02:21] HITS file was successfully produced:
[2025-10-13 17:02:21] -rw------- 1 boinc boinc 189722541 Oct 13 17:01 shared/HITS.pool.root.1
[2025-10-13 17:02:21]  *** Contents of shared directory: ***
[2025-10-13 17:02:21] total 405064
[2025-10-13 17:02:21] -rw-r--r-- 2 boinc boinc 223560042 Oct 13 15:51 ATLAS.root_0
[2025-10-13 17:02:21] -rw-r--r-- 2 boinc boinc    569680 Oct 13 15:51 input.tar.gz
[2025-10-13 17:02:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:51 start_atlas.sh
[2025-10-13 17:02:21] -rw------- 1 boinc boinc 189722541 Oct 13 17:01 HITS.pool.root.1
[2025-10-13 17:02:21] -rw------- 1 boinc boinc    901120 Oct 13 17:02 result.tar.gz
17:02:22 (3873495): run_atlas exited; CPU time 15941.315180
17:02:22 (3873495): called boinc_finish(0)

</stderr_txt>
]]>

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