Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
02:27:42 (41570): wrapper (7.7.26015): starting
02:27:42 (41570): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 02:27:42] Arguments: --nthreads 4
[2025-10-13 02:27:42] Threads: 4
[2025-10-13 02:27:42] Checking for CVMFS
[2025-10-13 02:27:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:27:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:27:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:27:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:27:43] 2.11.5.0 39292 0 27516 151650 3 5 3228445 4096000 88 130560 0 5066 99.980 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 02:27:43] CVMFS is ok
[2025-10-13 02:27:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:27:43] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 02:27:43] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 02:27:43] Further information can be found at the LHC@home message board.
[2025-10-13 02:27:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:27:43] Checking for apptainer binary...
[2025-10-13 02:27:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:27:43] Running /usr/bin/apptainer --version
[2025-10-13 02:27:43] apptainer version 1.4.3
[2025-10-13 02:27:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:27:43] x32-linux3
[2025-10-13 02:27:43] apptainer works
[2025-10-13 02:27:43] Set ATHENA_PROC_NUMBER=4
[2025-10-13 02:27:43] Set ATHENA_CORE_NUMBER=4
[2025-10-13 02:27:43] Starting ATLAS job with PandaID=6841068697
[2025-10-13 02:27:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:33:09]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | intersect: -39686866470.66832
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | chi2: 1.074988569082604
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | sum of square deviations: 496597218.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | sum of deviations: 11968588753.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | mean x: 1760340431.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | mean y: 2298190.5555555555
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | -- intersect: -42424018188.68315
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | intersect: -42424018188.68315
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | chi2: 1.0763995159302002
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | current chi2=1.0763995159302002 (change=-0.13125226520318653 %)
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | right removable region: 116
[2025-10-13 04:33:09] 2025-10-13 08:32:11,575 | INFO     | sum of square deviations: 496597218.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | sum of deviations: 1757322953.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | mean x: 1760340736.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | mean y: 2324268.769230769
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | -- intersect: -6227044459.739661
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | intersect: -6227044459.739661
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | chi2: 0.0012480658471032584
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | current chi2=0.0012480658471032584 (change=99.88389961688911 %)
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | sum of square deviations: 435610028.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | sum of deviations: 1892341542.5000002
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | mean x: 1760340888.5
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | mean y: 2323928.151785714
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | -- intersect: -7644805334.606854
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | intersect: -7644805334.606854
[2025-10-13 04:33:09] 2025-10-13 08:32:11,576 | INFO     | chi2: 0.000812701335905834
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | current chi2=0.000812701335905834 (change=34.8831363511708 %)
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | sum of square deviations: 379832238.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | sum of deviations: 1803041599.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | mean x: 1760341041.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | mean y: 2324194.523364486
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | -- intersect: -8353912606.392846
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | intersect: -8353912606.392846
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | chi2: 0.00019610597221839893
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | current chi2=0.00019610597221839893 (change=75.86985974376185 %)
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | sum of square deviations: 329031285.5
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | sum of deviations: 1477876188.5
[2025-10-13 04:33:09] 2025-10-13 08:32:11,577 | INFO     | mean x: 1760341193.5
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | mean y: 2325170.5784313725
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | -- intersect: -7904419410.12595
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | intersect: -7904419410.12595
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | chi2: 0.00016577045502882485
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | current chi2=0.00016577045502882485 (change=15.468941025309563 %)
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | left removable region: 40
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | sum of square deviations: 136095575.0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | sum of deviations: 596556850.5000001
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | mean x: 1760341620.5
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | mean y: 2326979.539473684
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | -- intersect: -7713896365.191216
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | intersect: -7713896365.191216
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | chi2: 0.00010856329866302961
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | -- intersect: -7713896365.191216
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | current memory leak: 4.38 B/s (using 76 data points, chi2=0.00)
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | could have reported an average CPU frequency of 3298 MHz (8 samples)
[2025-10-13 04:33:09] 2025-10-13 08:32:11,578 | INFO     | ..............................
[2025-10-13 04:33:09] 2025-10-13 08:32:11,579 | INFO     | . Timing measurements:
[2025-10-13 04:33:09] 2025-10-13 08:32:11,579 | INFO     | . get job = 0 s
[2025-10-13 04:33:09] 2025-10-13 08:32:11,579 | INFO     | . initial setup = 2 s
[2025-10-13 04:33:09] 2025-10-13 08:32:11,579 | INFO     | . payload setup = 4 s
[2025-10-13 04:33:09] 2025-10-13 08:32:11,579 | INFO     | . stage-in = 0 s
[2025-10-13 04:33:09] 2025-10-13 08:32:11,579 | INFO     | . payload execution = 7431 s
[2025-10-13 04:33:09] 2025-10-13 08:32:11,579 | INFO     | . stage-out = 0 s
[2025-10-13 04:33:09] 2025-10-13 08:32:11,579 | INFO     | . log creation = 0 s
[2025-10-13 04:33:09] 2025-10-13 08:32:11,579 | INFO     | ..............................
[2025-10-13 04:33:09] 2025-10-13 08:32:11,626 | INFO     | 
[2025-10-13 04:33:09] 2025-10-13 08:32:11,626 | INFO     | job summary report
[2025-10-13 04:33:09] 2025-10-13 08:32:11,626 | INFO     | --------------------------------------------------
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | PanDA job id: 6841068697
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | task id: 46676269
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | errors: (none)
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | pilot state: finished 
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | transexitcode: 0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | exeerrorcode: 0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | exeerrordiag: 
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | exitcode: 0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | exitmsg: OK
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | cpuconsumptiontime: 28818 s
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | nevents: 400
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | neventsw: 0
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | pid: 124649
[2025-10-13 04:33:09] 2025-10-13 08:32:11,627 | INFO     | pgrp: 124649
[2025-10-13 04:33:09] 2025-10-13 08:32:11,628 | INFO     | corecount: 4
[2025-10-13 04:33:09] 2025-10-13 08:32:11,628 | INFO     | event service: False
[2025-10-13 04:33:09] 2025-10-13 08:32:11,628 | INFO     | sizes: {0: 2348864, 3: 2349126, 11: 2349154, 7439: 2385630, 7440: 2385630, 7446: 2385824}
[2025-10-13 04:33:09] 2025-10-13 08:32:11,628 | INFO     | --------------------------------------------------
[2025-10-13 04:33:09] 2025-10-13 08:32:11,628 | INFO     | 
[2025-10-13 04:33:09] 2025-10-13 08:32:11,628 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,644 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,644 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:33:09] 2025-10-13 08:32:11,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,644 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:33:09] 2025-10-13 08:32:11,644 | INFO     | job 6841068697 has completed (purged errors)
[2025-10-13 04:33:09] 2025-10-13 08:32:11,644 | INFO     | overall cleanup function is called
[2025-10-13 04:33:09] 2025-10-13 08:32:12,649 | INFO     | --- collectZombieJob: --- 10, [124649]
[2025-10-13 04:33:09] 2025-10-13 08:32:12,649 | INFO     | zombie collector waiting for pid 124649
[2025-10-13 04:33:09] 2025-10-13 08:32:12,649 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:33:09] 2025-10-13 08:32:12,649 | INFO     | collected zombie processes
[2025-10-13 04:33:09] 2025-10-13 08:32:12,649 | INFO     | will attempt to kill all subprocesses of pid=124649
[2025-10-13 04:33:09] 2025-10-13 08:32:12,730 | INFO     | process IDs to be killed: [124649] (in reverse order)
[2025-10-13 04:33:09] 2025-10-13 08:32:12,771 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:33:09] 2025-10-13 08:32:12,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:33:09] 2025-10-13 08:32:12,776 | INFO     | did not find any defunct processes belonging to 124649
[2025-10-13 04:33:09] 2025-10-13 08:32:12,780 | INFO     | did not find any defunct processes belonging to 124649
[2025-10-13 04:33:09] 2025-10-13 08:32:12,780 | INFO     | ready for new job
[2025-10-13 04:33:09] 2025-10-13 08:32:12,780 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:33:09] 2025-10-13 08:32:12,781 | INFO     | ***************************************
[2025-10-13 04:33:09] 2025-10-13 08:32:12,781 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:33:09] 2025-10-13 08:32:12,781 | INFO     | ***************************************
[2025-10-13 04:33:09] 2025-10-13 08:32:12,781 | INFO     | 
[2025-10-13 04:33:09] 2025-10-13 08:32:12,803 | INFO     | architecture information:
[2025-10-13 04:33:09] 2025-10-13 08:32:12,803 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:33:09] 2025-10-13 08:32:12,815 | INFO     | cat /etc/os-release:
[2025-10-13 04:33:09] NAME="CentOS Linux"
[2025-10-13 04:33:09] VERSION="7 (Core)"
[2025-10-13 04:33:09] ID="centos"
[2025-10-13 04:33:09] ID_LIKE="rhel fedora"
[2025-10-13 04:33:09] VERSION_ID="7"
[2025-10-13 04:33:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:33:09] ANSI_COLOR="0;31"
[2025-10-13 04:33:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:33:09] HOME_URL="https://www.centos.org/"
[2025-10-13 04:33:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:33:09] 
[2025-10-13 04:33:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:33:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:33:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:33:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:33:09] 
[2025-10-13 04:33:09] 2025-10-13 08:32:12,815 | INFO     | ***************************************
[2025-10-13 04:33:09] 2025-10-13 08:32:13,318 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-10-13 04:33:09] 2025-10-13 08:32:13,332 | INFO     | sufficient remaining disk space (396732923904 B)
[2025-10-13 04:33:09] 2025-10-13 08:32:13,332 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:33:09] 2025-10-13 08:32:13,332 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:33:09] 2025-10-13 08:32:13,332 | INFO     | update_server=False
[2025-10-13 04:33:09] 2025-10-13 08:32:13,332 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:33:09] 2025-10-13 08:32:13,332 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:33:09] 2025-10-13 08:32:13,332 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:33:09] 2025-10-13 08:32:13,333 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:33:09] 2025-10-13 08:32:13,333 | INFO     | aborting loop
[2025-10-13 04:33:09] 2025-10-13 08:32:13,766 | INFO     | all payload control threads have been joined
[2025-10-13 04:33:09] 2025-10-13 08:32:14,106 | INFO     | all data control threads have been joined
[2025-10-13 04:33:09] 2025-10-13 08:32:14,337 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:14,338 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:14,338 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:14,452 | INFO     | all job control threads have been joined
[2025-10-13 04:33:09] 2025-10-13 08:32:14,575 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:14,755 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:14,772 | INFO     | [payload] control thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:14,857 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:14,867 | INFO     | [job] validate thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:14,966 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:15,111 | INFO     | [data] control thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:15,220 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:15,338 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:15,457 | INFO     | [job] control thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:15,825 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:16,321 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:33:09] 2025-10-13 08:32:20,327 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:24,121 | INFO     | job.realtimelogging is not enabled
[2025-10-13 04:33:09] 2025-10-13 08:32:25,126 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:33:09] 2025-10-13 08:32:44,283 | INFO     | PID=66382 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 04:33:09] 2025-10-13 08:32:44,283 | INFO     | .. there are 5 such processes running
[2025-10-13 04:33:09] 2025-10-13 08:32:44,283 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:33:09] 2025-10-13 08:32:44,283 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:33:09] 2025-10-13 08:32:44,283 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:33:09] 2025-10-13 08:33:03,561 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:33:09] 2025-10-13 08:33:04,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474316613440)>', '<ExcThread(monitor, started 140474097710848)>']
[2025-10-13 04:33:09] 2025-10-13 08:33:05,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:33:09] 2025-10-13 08:33:05,380 | INFO     | [monitor] control thread has ended
[2025-10-13 04:33:09] 2025-10-13 08:33:09,730 | INFO     | all workflow threads have been joined
[2025-10-13 04:33:09] 2025-10-13 08:33:09,731 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:33:09] 2025-10-13 08:33:09,731 | INFO     | traces error code: 0
[2025-10-13 04:33:09] 2025-10-13 08:33:09,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:33:09] 2025-10-13 08:33:09,777 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:33:09] 2025-10-13 08:33:09,780 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:33:09] 2025-10-13 08:33:09,783 [wrapper] pilotpid: 66382
[2025-10-13 04:33:09] 2025-10-13 08:33:09,786 [wrapper] Pilot exit status: 0
[2025-10-13 04:33:09] 2025-10-13 08:33:09,796 [wrapper] pandaids: 6841068697
[2025-10-13 04:33:09] 2025-10-13 08:33:09,826 [wrapper] cleanup supervisor_pilot  249192 66383
[2025-10-13 04:33:09] 2025-10-13 08:33:09,828 [wrapper] Test setup, not cleaning
[2025-10-13 04:33:09] 2025-10-13 08:33:09,830 [wrapper] apfmon messages muted
[2025-10-13 04:33:09] 2025-10-13 08:33:09,833 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:33:09] 2025-10-13 08:33:09,835 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:33:09]  *** Error codes and diagnostics ***
[2025-10-13 04:33:09]     "exeErrorCode": 0,
[2025-10-13 04:33:09]     "exeErrorDiag": "",
[2025-10-13 04:33:09]     "pilotErrorCode": 0,
[2025-10-13 04:33:09]     "pilotErrorDiag": "",
[2025-10-13 04:33:09]  *** Listing of results directory ***
[2025-10-13 04:33:09] total 416688
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:11 pilot3.tar.gz
[2025-10-13 04:33:09] -rwx------ 1 boinc boinc     36292 Oct 12 20:15 runpilot2-wrapper.sh
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:15 queuedata.json
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:33:09] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:27 run_atlas
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:27 job.xml
[2025-10-13 04:33:09] -rw-r--r-- 2 boinc boinc 222763076 Oct 13 02:27 EVNT.46676267._004684.pool.root.1
[2025-10-13 04:33:09] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:27 start_atlas.sh
[2025-10-13 04:33:09] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:27 shared
[2025-10-13 04:33:09] -rw-r--r-- 2 boinc boinc    569677 Oct 13 02:27 input.tar.gz
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc      9157 Oct 13 02:27 init_data.xml
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:27 boinc_setup_complete
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:27 boinc_lockfile
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc      2550 Oct 13 02:27 pandaJob.out
[2025-10-13 04:33:09] -rw------- 1 boinc boinc    973230 Oct 13 02:27 agis_schedconf.cvmfs.json
[2025-10-13 04:33:09] -rw------- 1 boinc boinc   1560580 Oct 13 02:27 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:33:09] drwx------ 5 boinc boinc      4096 Oct 13 02:27 pilot3
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc       529 Oct 13 04:31 boinc_task_state.xml
[2025-10-13 04:33:09] -rw------- 1 boinc boinc 197270577 Oct 13 04:31 HITS.46676269._092933.pool.root.1
[2025-10-13 04:33:09] -rw------- 1 boinc boinc        95 Oct 13 04:32 pilot_heartbeat.json
[2025-10-13 04:33:09] -rw------- 1 boinc boinc      1015 Oct 13 04:32 memory_monitor_summary.json
[2025-10-13 04:33:09] -rw------- 1 boinc boinc    295730 Oct 13 04:32 log.46676269._092933.job.log.tgz.1
[2025-10-13 04:33:09] -rw------- 1 boinc boinc      7735 Oct 13 04:32 heartbeat.json
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc        27 Oct 13 04:33 wrapper_checkpoint.txt
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc      8192 Oct 13 04:33 boinc_mmap_file
[2025-10-13 04:33:09] -rw------- 1 boinc boinc      4901 Oct 13 04:33 pilotlog.txt
[2025-10-13 04:33:09] -rw------- 1 boinc boinc   1077495 Oct 13 04:33 log.46676269._092933.job.log.1
[2025-10-13 04:33:09] -rw------- 1 boinc boinc       357 Oct 13 04:33 output.list
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc       620 Oct 13 04:33 runtime_log
[2025-10-13 04:33:09] -rw------- 1 boinc boinc   1392640 Oct 13 04:33 result.tar.gz
[2025-10-13 04:33:09] -rw------- 1 boinc boinc       644 Oct 13 04:33 Sg7NDmeOLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3AmNDmggGTOn.diag
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc      8764 Oct 13 04:33 runtime_log.err
[2025-10-13 04:33:09] -rw-r--r-- 1 boinc boinc     20914 Oct 13 04:33 stderr.txt
[2025-10-13 04:33:09] HITS file was successfully produced:
[2025-10-13 04:33:09] -rw------- 1 boinc boinc 197270577 Oct 13 04:31 shared/HITS.pool.root.1
[2025-10-13 04:33:09]  *** Contents of shared directory: ***
[2025-10-13 04:33:09] total 412136
[2025-10-13 04:33:09] -rw-r--r-- 2 boinc boinc 222763076 Oct 13 02:27 ATLAS.root_0
[2025-10-13 04:33:09] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:27 start_atlas.sh
[2025-10-13 04:33:09] -rw-r--r-- 2 boinc boinc    569677 Oct 13 02:27 input.tar.gz
[2025-10-13 04:33:09] -rw------- 1 boinc boinc 197270577 Oct 13 04:31 HITS.pool.root.1
[2025-10-13 04:33:09] -rw------- 1 boinc boinc   1392640 Oct 13 04:33 result.tar.gz
04:33:11 (41570): run_atlas exited; CPU time 28917.761176
04:33:11 (41570): called boinc_finish(0)

</stderr_txt>
]]>

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