Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:03:38 (4002789): wrapper (7.7.26015): starting
19:03:38 (4002789): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 19:03:38] Arguments: --nthreads 12
[2025-10-13 19:03:38] Threads: 12
[2025-10-13 19:03:38] Checking for CVMFS
[2025-10-13 19:03:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 19:03:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 19:03:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 19:03:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 19:03:38] 2.13.2.0 8705 34988 123304 151667 0 188 40614899 46080000 922 130560 0 63209549 99.997 1175043 793 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 19:03:38] CVMFS is ok
[2025-10-13 19:03:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 19:03:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 19:03:38] Further information can be found at the LHC@home message board.
[2025-10-13 19:03:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:03:38] Checking for apptainer binary...
[2025-10-13 19:03:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 19:03:38] Running /usr/bin/apptainer --version
[2025-10-13 19:03:38] apptainer version 1.4.2-1.el9
[2025-10-13 19:03:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:03:38] gpu01.farm.particle.cz
[2025-10-13 19:03:38] apptainer works
[2025-10-13 19:03:38] Set ATHENA_PROC_NUMBER=12
[2025-10-13 19:03:38] Set ATHENA_CORE_NUMBER=12
[2025-10-13 19:03:38] Starting ATLAS job with PandaID=6840969439
[2025-10-13 19:03:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 19:44:07]  *** The last 200 lines of the pilot log: ***
[2025-10-13 19:44:07]  protocol_id=None
[2025-10-13 19:44:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 19:44:07]  replicas=None
[2025-10-13 19:44:07]  scope=mc23_13p6TeV
[2025-10-13 19:44:07]  status=None
[2025-10-13 19:44:07]  status_code=0
[2025-10-13 19:44:07]  storage_token=
[2025-10-13 19:44:07]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6840969439/log.46676269._092285.job.log.tgz.1
[2025-10-13 19:44:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/af/log.46676269._092285.job.log.tgz.1
[2025-10-13 19:44:07]  workdir=None
[2025-10-13 19:44:07] ]
[2025-10-13 19:44:07] 2025-10-13 17:43:31,554 | INFO     | transferring file log.46676269._092285.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6840969439/log.46676269._092285.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 19:44:07] 2025-10-13 17:43:31,554 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6840969439/log.46676269._092285.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._092285.job
[2025-10-13 19:44:07] 2025-10-13 17:43:31,568 | INFO     | adding to output.list: log.46676269._092285.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/af/log.46676269._092285.job.log.tg
[2025-10-13 19:44:07] 2025-10-13 17:43:31,569 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 19:44:07] 2025-10-13 17:43:31,569 | INFO     | summary of transferred files:
[2025-10-13 19:44:07] 2025-10-13 17:43:31,569 | INFO     |  -- lfn=log.46676269._092285.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 19:44:07] 2025-10-13 17:43:31,569 | INFO     | stage-out finished correctly
[2025-10-13 19:44:07] 2025-10-13 17:43:31,621 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 19:44:07] 2025-10-13 17:43:32,064 | INFO     | time since job start (2386s) is within the limit (172800.0s)
[2025-10-13 19:44:07] 2025-10-13 17:43:32,466 | INFO     | job 6840969439 has state=finished
[2025-10-13 19:44:07] 2025-10-13 17:43:32,467 | INFO     | preparing for final server update for job 6840969439 in state='finished'
[2025-10-13 19:44:07] 2025-10-13 17:43:32,467 | INFO     | this job has now completed (state=finished)
[2025-10-13 19:44:07] 2025-10-13 17:43:32,467 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 19:44:07] 2025-10-13 17:43:32,467 | INFO     | log transfer has been attempted: DONE
[2025-10-13 19:44:07] 2025-10-13 17:43:32,467 | INFO     | job 6840969439 has finished - writing final server update
[2025-10-13 19:44:07] 2025-10-13 17:43:32,468 | INFO     | total number of processed events: 400 (read)
[2025-10-13 19:44:07] 2025-10-13 17:43:32,468 | INFO     | executing command: lscpu
[2025-10-13 19:44:07] 2025-10-13 17:43:32,495 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 19:44:07] 2025-10-13 17:43:32,593 | WARNING  | process 4014407 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 19:44:07] 2025-10-13 17:43:32,593 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6840969439/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 19:44:07] 2025-10-13 17:43:32,679 | INFO     | number of running child processes to parent process 4014407: 1
[2025-10-13 19:44:07] 2025-10-13 17:43:32,679 | INFO     | maximum number of monitored processes: 6
[2025-10-13 19:44:07] 2025-10-13 17:43:34,070 | INFO     | time since job start (2388s) is within the limit (172800.0s)
[2025-10-13 19:44:07] 2025-10-13 17:43:35,132 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 19:44:07] 2025-10-13 17:43:35,137 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3223.70125
[2025-10-13 19:44:07] 2025-10-13 17:43:35,143 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6840969439/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 19:44:07] 2025-10-13 17:43:35,143 | INFO     | extracted standard info from prmon json
[2025-10-13 19:44:07] 2025-10-13 17:43:35,143 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 19:44:07] 2025-10-13 17:43:35,143 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 19:44:07] 2025-10-13 17:43:35,143 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 19:44:07] 2025-10-13 17:43:35,144 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 19:44:07] 2025-10-13 17:43:35,145 | INFO     | fitting pss+swap vs Time
[2025-10-13 19:44:07] 2025-10-13 17:43:35,145 | INFO     | sum of square deviations: 10150888.0
[2025-10-13 19:44:07] 2025-10-13 17:43:35,145 | INFO     | sum of deviations: -869426015.5
[2025-10-13 19:44:07] 2025-10-13 17:43:35,145 | INFO     | mean x: 1760376298.5
[2025-10-13 19:44:07] 2025-10-13 17:43:35,145 | INFO     | mean y: 2754950.84375
[2025-10-13 19:44:07] 2025-10-13 17:43:35,145 | INFO     | -- intersect: 150779411238.00735
[2025-10-13 19:44:07] 2025-10-13 17:43:35,145 | INFO     | intersect: 150779411238.00735
[2025-10-13 19:44:07] 2025-10-13 17:43:35,145 | INFO     | chi2: 0.013387918650354274
[2025-10-13 19:44:07] 2025-10-13 17:43:35,145 | INFO     | -- intersect: 150779411238.00735
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | current memory leak: -85.65 B/s (using 32 data points, chi2=0.01)
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | could have reported an average CPU frequency of 3218 MHz (5 samples)
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | ..............................
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | . Timing measurements:
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | . get job = 0 s
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | . initial setup = 2 s
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | . payload setup = 3 s
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | . stage-in = 0 s
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | . payload execution = 2363 s
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | . stage-out = 0 s
[2025-10-13 19:44:07] 2025-10-13 17:43:35,146 | INFO     | . log creation = 0 s
[2025-10-13 19:44:07] 2025-10-13 17:43:35,147 | INFO     | ..............................
[2025-10-13 19:44:07] 2025-10-13 17:43:35,224 | INFO     | 
[2025-10-13 19:44:07] 2025-10-13 17:43:35,224 | INFO     | job summary report
[2025-10-13 19:44:07] 2025-10-13 17:43:35,224 | INFO     | --------------------------------------------------
[2025-10-13 19:44:07] 2025-10-13 17:43:35,224 | INFO     | PanDA job id: 6840969439
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | task id: 46676269
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | errors: (none)
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | pilot state: finished 
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | transexitcode: 0
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | exeerrorcode: 0
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | exeerrordiag: 
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | exitcode: 0
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | exitmsg: OK
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | cpuconsumptiontime: 25215 s
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | nevents: 400
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | neventsw: 0
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | pid: 4014407
[2025-10-13 19:44:07] 2025-10-13 17:43:35,225 | INFO     | pgrp: 4014407
[2025-10-13 19:44:07] 2025-10-13 17:43:35,226 | INFO     | corecount: 12
[2025-10-13 19:44:07] 2025-10-13 17:43:35,226 | INFO     | event service: False
[2025-10-13 19:44:07] 2025-10-13 17:43:35,226 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 2370: 2374353, 2371: 2383407, 2374: 2383577}
[2025-10-13 19:44:07] 2025-10-13 17:43:35,226 | INFO     | --------------------------------------------------
[2025-10-13 19:44:07] 2025-10-13 17:43:35,226 | INFO     | 
[2025-10-13 19:44:07] 2025-10-13 17:43:35,226 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 19:44:07] 2025-10-13 17:43:35,241 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,241 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,241 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,241 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,241 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,241 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,241 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,241 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,241 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | job 6840969439 has completed (purged errors)
[2025-10-13 19:44:07] 2025-10-13 17:43:35,242 | INFO     | overall cleanup function is called
[2025-10-13 19:44:07] 2025-10-13 17:43:36,251 | INFO     | --- collectZombieJob: --- 10, [4014407]
[2025-10-13 19:44:07] 2025-10-13 17:43:36,251 | INFO     | zombie collector waiting for pid 4014407
[2025-10-13 19:44:07] 2025-10-13 17:43:36,251 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 19:44:07] 2025-10-13 17:43:36,251 | INFO     | collected zombie processes
[2025-10-13 19:44:07] 2025-10-13 17:43:36,251 | INFO     | will attempt to kill all subprocesses of pid=4014407
[2025-10-13 19:44:07] 2025-10-13 17:43:36,340 | INFO     | process IDs to be killed: [4014407] (in reverse order)
[2025-10-13 19:44:07] 2025-10-13 17:43:36,379 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 19:44:07] 2025-10-13 17:43:36,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 19:44:07] 2025-10-13 17:43:36,383 | INFO     | did not find any defunct processes belonging to 4014407
[2025-10-13 19:44:07] 2025-10-13 17:43:36,385 | INFO     | did not find any defunct processes belonging to 4014407
[2025-10-13 19:44:07] 2025-10-13 17:43:36,386 | INFO     | ready for new job
[2025-10-13 19:44:07] 2025-10-13 17:43:36,386 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 19:44:07] 2025-10-13 17:43:36,387 | INFO     | ***************************************
[2025-10-13 19:44:07] 2025-10-13 17:43:36,387 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 19:44:07] 2025-10-13 17:43:36,387 | INFO     | ***************************************
[2025-10-13 19:44:07] 2025-10-13 17:43:36,387 | INFO     | 
[2025-10-13 19:44:07] 2025-10-13 17:43:36,388 | INFO     | architecture information:
[2025-10-13 19:44:07] 2025-10-13 17:43:36,388 | INFO     | executing command: cat /etc/os-release
[2025-10-13 19:44:07] 2025-10-13 17:43:36,400 | INFO     | cat /etc/os-release:
[2025-10-13 19:44:07] NAME="CentOS Linux"
[2025-10-13 19:44:07] VERSION="7 (Core)"
[2025-10-13 19:44:07] ID="centos"
[2025-10-13 19:44:07] ID_LIKE="rhel fedora"
[2025-10-13 19:44:07] VERSION_ID="7"
[2025-10-13 19:44:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 19:44:07] ANSI_COLOR="0;31"
[2025-10-13 19:44:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 19:44:07] HOME_URL="https://www.centos.org/"
[2025-10-13 19:44:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 19:44:07] 
[2025-10-13 19:44:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 19:44:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 19:44:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 19:44:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 19:44:07] 
[2025-10-13 19:44:07] 2025-10-13 17:43:36,400 | INFO     | ***************************************
[2025-10-13 19:44:07] 2025-10-13 17:43:36,903 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 19:44:07] 2025-10-13 17:43:36,915 | INFO     | sufficient remaining disk space (56703844352 B)
[2025-10-13 19:44:07] 2025-10-13 17:43:36,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 19:44:07] 2025-10-13 17:43:36,915 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 19:44:07] 2025-10-13 17:43:36,915 | INFO     | update_server=False
[2025-10-13 19:44:07] 2025-10-13 17:43:36,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 19:44:07] 2025-10-13 17:43:36,916 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:44:07] 2025-10-13 17:43:36,916 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:44:07] 2025-10-13 17:43:36,916 | INFO     | aborting loop
[2025-10-13 19:44:07] 2025-10-13 17:43:36,941 | INFO     | all data control threads have been joined
[2025-10-13 19:44:07] 2025-10-13 17:43:37,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 19:44:07] 2025-10-13 17:43:37,686 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 19:44:07] 2025-10-13 17:43:37,921 | INFO     | [job] retrieve thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:37,922 | INFO     | [job] queue monitor thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:37,922 | INFO     | [job] job monitor thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:37,947 | INFO     | [data] control thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:37,969 | INFO     | all payload control threads have been joined
[2025-10-13 19:44:07] 2025-10-13 17:43:38,098 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:38,289 | INFO     | all job control threads have been joined
[2025-10-13 19:44:07] 2025-10-13 17:43:38,423 | INFO     | [data] copytool_in thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:38,550 | INFO     | [payload] validate_post thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:38,752 | INFO     | [job] validate thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:38,943 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:38,974 | INFO     | [payload] control thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:39,028 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:39,134 | INFO     | [data] copytool_out thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:39,295 | INFO     | [job] control thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:39,406 | INFO     | [payload] failed_post thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:41,692 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:47,537 | INFO     | job.realtimelogging is not enabled
[2025-10-13 19:44:07] 2025-10-13 17:43:48,542 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 19:44:07] 2025-10-13 17:43:49,948 | INFO     | [monitor] cgroup control has ended
[2025-10-13 19:44:07] 2025-10-13 17:43:50,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140123087599424)>', '<ExcThread(monitor, started 140122737587968)>']
[2025-10-13 19:44:07] 2025-10-13 17:43:55,895 | INFO     | all workflow threads have been joined
[2025-10-13 19:44:07] 2025-10-13 17:43:55,896 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 19:44:07] 2025-10-13 17:43:55,896 | INFO     | traces error code: 0
[2025-10-13 19:44:07] 2025-10-13 17:43:55,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 19:44:07] 2025-10-13 17:44:07,248 | INFO     | PID=4006660 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 19:44:07] 2025-10-13 17:44:07,249 | INFO     | .. there are 2 such processes running
[2025-10-13 19:44:07] 2025-10-13 17:44:07,249 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 19:44:07] 2025-10-13 17:44:07,249 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 19:44:07] 2025-10-13 17:44:07,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 19:44:07] 2025-10-13 17:44:07,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 19:44:07] 2025-10-13 17:44:07,249 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 19:44:07] 2025-10-13 17:44:07,249 | INFO     | [monitor] control thread has ended
[2025-10-13 19:44:07] 2025-10-13 17:44:07,318 [wrapper] ==== pilot stdout END ====
[2025-10-13 19:44:07] 2025-10-13 17:44:07,320 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 19:44:07] 2025-10-13 17:44:07,322 [wrapper] pilotpid: 4006660
[2025-10-13 19:44:07] 2025-10-13 17:44:07,324 [wrapper] Pilot exit status: 0
[2025-10-13 19:44:07] 2025-10-13 17:44:07,331 [wrapper] pandaids: 6840969439
[2025-10-13 19:44:07] 2025-10-13 17:44:07,356 [wrapper] cleanup supervisor_pilot 4054223 4006661
[2025-10-13 19:44:07] 2025-10-13 17:44:07,358 [wrapper] Test setup, not cleaning
[2025-10-13 19:44:07] 2025-10-13 17:44:07,360 [wrapper] apfmon messages muted
[2025-10-13 19:44:07] 2025-10-13 17:44:07,361 [wrapper] ==== wrapper stdout END ====
[2025-10-13 19:44:07] 2025-10-13 17:44:07,363 [wrapper] ==== wrapper stderr END ====
[2025-10-13 19:44:07]  *** Error codes and diagnostics ***
[2025-10-13 19:44:07]     "exeErrorCode": 0,
[2025-10-13 19:44:07]     "exeErrorDiag": "",
[2025-10-13 19:44:07]     "pilotErrorCode": 0,
[2025-10-13 19:44:07]     "pilotErrorDiag": "",
[2025-10-13 19:44:07]  *** Listing of results directory ***
[2025-10-13 19:44:07] total 410100
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 19:44:07] -rwx------ 1 boinc boinc     36292 Oct 13 01:37 runpilot2-wrapper.sh
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:37 queuedata.json
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc       100 Oct 13 19:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 19:44:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 19:03 run_atlas
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc       105 Oct 13 19:03 job.xml
[2025-10-13 19:44:07] -rw-r--r-- 2 boinc boinc 219615921 Oct 13 19:03 EVNT.46676267._004660.pool.root.1
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc      9445 Oct 13 19:03 init_data.xml
[2025-10-13 19:44:07] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:03 start_atlas.sh
[2025-10-13 19:44:07] drwxrwx--x 2 boinc boinc      4096 Oct 13 19:03 shared
[2025-10-13 19:44:07] -rw-r--r-- 2 boinc boinc    569675 Oct 13 19:03 input.tar.gz
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:03 boinc_lockfile
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc      2550 Oct 13 19:03 pandaJob.out
[2025-10-13 19:44:07] -rw------- 1 boinc boinc    972783 Oct 13 19:03 agis_schedconf.cvmfs.json
[2025-10-13 19:44:07] -rw------- 1 boinc boinc   1560580 Oct 13 19:03 agis_ddmendpoints.agis.ALL.json
[2025-10-13 19:44:07] drwx------ 5 boinc boinc      4096 Oct 13 19:03 pilot3
[2025-10-13 19:44:07] -rw------- 1 boinc boinc 194927439 Oct 13 19:43 HITS.46676269._092285.pool.root.1
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc       529 Oct 13 19:43 boinc_task_state.xml
[2025-10-13 19:44:07] -rw------- 1 boinc boinc      1013 Oct 13 19:43 memory_monitor_summary.json
[2025-10-13 19:44:07] -rw------- 1 boinc boinc    361845 Oct 13 19:43 log.46676269._092285.job.log.tgz.1
[2025-10-13 19:44:07] -rw------- 1 boinc boinc      7769 Oct 13 19:43 heartbeat.json
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc      8192 Oct 13 19:44 boinc_mmap_file
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc        27 Oct 13 19:44 wrapper_checkpoint.txt
[2025-10-13 19:44:07] -rw------- 1 boinc boinc        95 Oct 13 19:44 pilot_heartbeat.json
[2025-10-13 19:44:07] -rw------- 1 boinc boinc       892 Oct 13 19:44 pilotlog.txt
[2025-10-13 19:44:07] -rw------- 1 boinc boinc    382140 Oct 13 19:44 log.46676269._092285.job.log.1
[2025-10-13 19:44:07] -rw------- 1 boinc boinc       357 Oct 13 19:44 output.list
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc       620 Oct 13 19:44 runtime_log
[2025-10-13 19:44:07] -rw------- 1 boinc boinc    768000 Oct 13 19:44 result.tar.gz
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc      8740 Oct 13 19:44 runtime_log.err
[2025-10-13 19:44:07] -rw------- 1 boinc boinc       658 Oct 13 19:44 cFJNDmrnKS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmuHVMDmkW7OKo.diag
[2025-10-13 19:44:07] -rw-r--r-- 1 boinc boinc     21715 Oct 13 19:44 stderr.txt
[2025-10-13 19:44:07] HITS file was successfully produced:
[2025-10-13 19:44:07] -rw------- 1 boinc boinc 194927439 Oct 13 19:43 shared/HITS.pool.root.1
[2025-10-13 19:44:07]  *** Contents of shared directory: ***
[2025-10-13 19:44:07] total 406168
[2025-10-13 19:44:07] -rw-r--r-- 2 boinc boinc 219615921 Oct 13 19:03 ATLAS.root_0
[2025-10-13 19:44:07] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:03 start_atlas.sh
[2025-10-13 19:44:07] -rw-r--r-- 2 boinc boinc    569675 Oct 13 19:03 input.tar.gz
[2025-10-13 19:44:07] -rw------- 1 boinc boinc 194927439 Oct 13 19:43 HITS.pool.root.1
[2025-10-13 19:44:07] -rw------- 1 boinc boinc    768000 Oct 13 19:44 result.tar.gz
19:44:08 (4002789): run_atlas exited; CPU time 25229.132542
19:44:08 (4002789): called boinc_finish(0)

</stderr_txt>
]]>

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