Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:44:58 (8894): wrapper (7.7.26015): starting
00:44:58 (8894): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:44:58] Arguments: --nthreads 12
[2025-10-13 00:44:58] Threads: 12
[2025-10-13 00:44:58] Checking for CVMFS
[2025-10-13 00:44:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:44:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:44:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:44:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:44:58] 2.11.2.0 3165 9479 82284 151649 3 59 12539496 20275200 1 130560 0 9296172 99.993 314704 43413 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 00:44:58] CVMFS is ok
[2025-10-13 00:44:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:44:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:44:58] Further information can be found at the LHC@home message board.
[2025-10-13 00:44:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:44:58] Checking for apptainer binary...
[2025-10-13 00:44:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:44:58] Running /usr/bin/apptainer --version
[2025-10-13 00:44:58] apptainer version 1.3.2-1.el7
[2025-10-13 00:44:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:45:00] c-115-40.aglt2.org
[2025-10-13 00:45:00] apptainer works
[2025-10-13 00:45:00] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:45:00] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:45:00] Starting ATLAS job with PandaID=6840970465
[2025-10-13 00:45:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:53:28]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:53:28]  protocol_id=None
[2025-10-13 01:53:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 01:53:28]  replicas=None
[2025-10-13 01:53:28]  scope=mc23_13p6TeV
[2025-10-13 01:53:28]  status=None
[2025-10-13 01:53:28]  status_code=0
[2025-10-13 01:53:28]  storage_token=
[2025-10-13 01:53:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840970465/log.46676269._092802.job.log.tgz.1
[2025-10-13 01:53:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/1a/log.46676269._092802.job.log.tgz.1
[2025-10-13 01:53:28]  workdir=None
[2025-10-13 01:53:28] ]
[2025-10-13 01:53:28] 2025-10-13 05:52:49,821 | INFO     | transferring file log.46676269._092802.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840970465/log.46676269._092802.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 01:53:28] 2025-10-13 05:52:49,821 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840970465/log.46676269._092802.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._092802.job
[2025-10-13 01:53:28] 2025-10-13 05:52:49,843 | INFO     | adding to output.list: log.46676269._092802.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/1a/log.46676269._092802.job.log.tg
[2025-10-13 01:53:28] 2025-10-13 05:52:49,844 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 01:53:28] 2025-10-13 05:52:49,844 | INFO     | summary of transferred files:
[2025-10-13 01:53:28] 2025-10-13 05:52:49,844 | INFO     |  -- lfn=log.46676269._092802.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 01:53:28] 2025-10-13 05:52:49,845 | INFO     | stage-out finished correctly
[2025-10-13 01:53:28] 2025-10-13 05:52:51,014 | INFO     | time since job start (4057s) is within the limit (172800.0s)
[2025-10-13 01:53:28] 2025-10-13 05:52:51,223 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 01:53:28] 2025-10-13 05:52:52,115 | INFO     | job 6840970465 has state=finished
[2025-10-13 01:53:28] 2025-10-13 05:52:52,115 | INFO     | preparing for final server update for job 6840970465 in state='finished'
[2025-10-13 01:53:28] 2025-10-13 05:52:52,116 | INFO     | this job has now completed (state=finished)
[2025-10-13 01:53:28] 2025-10-13 05:52:52,116 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 01:53:28] 2025-10-13 05:52:52,116 | INFO     | log transfer has been attempted: DONE
[2025-10-13 01:53:28] 2025-10-13 05:52:52,117 | INFO     | job 6840970465 has finished - writing final server update
[2025-10-13 01:53:28] 2025-10-13 05:52:52,117 | INFO     | total number of processed events: 400 (read)
[2025-10-13 01:53:28] 2025-10-13 05:52:52,118 | INFO     | executing command: lscpu
[2025-10-13 01:53:28] 2025-10-13 05:52:52,133 | INFO     | PID=12747 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:53:28] 2025-10-13 05:52:52,142 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 01:53:28] 2025-10-13 05:52:52,146 | INFO     | monitor loop #305: job 0:6840970465 is in state 'finished'
[2025-10-13 01:53:28] 2025-10-13 05:52:52,147 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:53:28] 2025-10-13 05:52:53,134 | INFO     | time since job start (4059s) is within the limit (172800.0s)
[2025-10-13 01:53:28] 2025-10-13 05:52:54,647 | INFO     | monitor loop #306: job 0:6840970465 is in state 'finished'
[2025-10-13 01:53:28] 2025-10-13 05:52:54,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:53:28] 2025-10-13 05:52:55,139 | INFO     | time since job start (4061s) is within the limit (172800.0s)
[2025-10-13 01:53:28] 2025-10-13 05:52:56,649 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 01:53:28] 2025-10-13 05:52:56,652 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.4166666666667
[2025-10-13 01:53:28] 2025-10-13 05:52:56,654 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840970465/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:53:28] 2025-10-13 05:52:56,655 | INFO     | extracted standard info from prmon json
[2025-10-13 01:53:28] 2025-10-13 05:52:56,655 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:53:28] 2025-10-13 05:52:56,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:53:28] 2025-10-13 05:52:56,655 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:53:28] 2025-10-13 05:52:56,655 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:53:28] 2025-10-13 05:52:56,656 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:53:28] 2025-10-13 05:52:56,657 | INFO     | sum of square deviations: 63666310.0
[2025-10-13 01:53:28] 2025-10-13 05:52:56,657 | INFO     | sum of deviations: -5218110556.0
[2025-10-13 01:53:28] 2025-10-13 05:52:56,657 | INFO     | mean x: 1760332817.0
[2025-10-13 01:53:28] 2025-10-13 05:52:56,657 | INFO     | mean y: 2815147.1016949154
[2025-10-13 01:53:28] 2025-10-13 05:52:56,657 | INFO     | -- intersect: 144280239965.0457
[2025-10-13 01:53:28] 2025-10-13 05:52:56,657 | INFO     | intersect: 144280239965.0457
[2025-10-13 01:53:28] 2025-10-13 05:52:56,658 | INFO     | chi2: 0.08528543745997884
[2025-10-13 01:53:28] 2025-10-13 05:52:56,658 | INFO     | -- intersect: 144280239965.0457
[2025-10-13 01:53:28] 2025-10-13 05:52:56,658 | INFO     | current memory leak: -81.96 B/s (using 59 data points, chi2=0.09)
[2025-10-13 01:53:28] 2025-10-13 05:52:56,658 | INFO     | could have reported an average CPU frequency of 2157 MHz (6 samples)
[2025-10-13 01:53:28] 2025-10-13 05:52:56,658 | INFO     | ..............................
[2025-10-13 01:53:28] 2025-10-13 05:52:56,658 | INFO     | . Timing measurements:
[2025-10-13 01:53:28] 2025-10-13 05:52:56,658 | INFO     | . get job = 0 s
[2025-10-13 01:53:28] 2025-10-13 05:52:56,658 | INFO     | . initial setup = 2 s
[2025-10-13 01:53:28] 2025-10-13 05:52:56,659 | INFO     | . payload setup = 7 s
[2025-10-13 01:53:28] 2025-10-13 05:52:56,659 | INFO     | . stage-in = 0 s
[2025-10-13 01:53:28] 2025-10-13 05:52:56,659 | INFO     | . payload execution = 4028 s
[2025-10-13 01:53:28] 2025-10-13 05:52:56,659 | INFO     | . stage-out = 0 s
[2025-10-13 01:53:28] 2025-10-13 05:52:56,659 | INFO     | . log creation = 0 s
[2025-10-13 01:53:28] 2025-10-13 05:52:56,659 | INFO     | ..............................
[2025-10-13 01:53:28] 2025-10-13 05:52:57,091 | INFO     | 
[2025-10-13 01:53:28] 2025-10-13 05:52:57,091 | INFO     | job summary report
[2025-10-13 01:53:28] 2025-10-13 05:52:57,091 | INFO     | --------------------------------------------------
[2025-10-13 01:53:28] 2025-10-13 05:52:57,092 | INFO     | PanDA job id: 6840970465
[2025-10-13 01:53:28] 2025-10-13 05:52:57,092 | INFO     | task id: 46676269
[2025-10-13 01:53:28] 2025-10-13 05:52:57,092 | INFO     | errors: (none)
[2025-10-13 01:53:28] 2025-10-13 05:52:57,092 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:53:28] 2025-10-13 05:52:57,092 | INFO     | pilot state: finished 
[2025-10-13 01:53:28] 2025-10-13 05:52:57,092 | INFO     | transexitcode: 0
[2025-10-13 01:53:28] 2025-10-13 05:52:57,093 | INFO     | exeerrorcode: 0
[2025-10-13 01:53:28] 2025-10-13 05:52:57,093 | INFO     | exeerrordiag: 
[2025-10-13 01:53:28] 2025-10-13 05:52:57,093 | INFO     | exitcode: 0
[2025-10-13 01:53:28] 2025-10-13 05:52:57,093 | INFO     | exitmsg: OK
[2025-10-13 01:53:28] 2025-10-13 05:52:57,093 | INFO     | cpuconsumptiontime: 42989 s
[2025-10-13 01:53:28] 2025-10-13 05:52:57,093 | INFO     | nevents: 400
[2025-10-13 01:53:28] 2025-10-13 05:52:57,094 | INFO     | neventsw: 0
[2025-10-13 01:53:28] 2025-10-13 05:52:57,094 | INFO     | pid: 19286
[2025-10-13 01:53:28] 2025-10-13 05:52:57,094 | INFO     | pgrp: 19286
[2025-10-13 01:53:28] 2025-10-13 05:52:57,094 | INFO     | corecount: 12
[2025-10-13 01:53:28] 2025-10-13 05:52:57,094 | INFO     | event service: False
[2025-10-13 01:53:28] 2025-10-13 05:52:57,094 | INFO     | sizes: {0: 2348579, 1: 2348834, 6: 2349096, 12: 2349124, 4038: 2374965, 4039: 2383963, 4041: 2384147, 4046: 2384341}
[2025-10-13 01:53:28] 2025-10-13 05:52:57,094 | INFO     | --------------------------------------------------
[2025-10-13 01:53:28] 2025-10-13 05:52:57,095 | INFO     | 
[2025-10-13 01:53:28] 2025-10-13 05:52:57,095 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 01:53:28] 2025-10-13 05:52:57,119 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,119 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,119 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,119 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,120 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,120 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,120 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,120 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,120 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,120 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,121 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,121 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,121 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,121 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,121 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,121 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,122 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:53:28] 2025-10-13 05:52:57,122 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,122 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:53:28] 2025-10-13 05:52:57,122 | INFO     | job 6840970465 has completed (purged errors)
[2025-10-13 01:53:28] 2025-10-13 05:52:57,122 | INFO     | overall cleanup function is called
[2025-10-13 01:53:28] 2025-10-13 05:52:58,130 | INFO     | --- collectZombieJob: --- 10, [19286]
[2025-10-13 01:53:28] 2025-10-13 05:52:58,130 | INFO     | zombie collector waiting for pid 19286
[2025-10-13 01:53:28] 2025-10-13 05:52:58,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:53:28] 2025-10-13 05:52:58,130 | INFO     | collected zombie processes
[2025-10-13 01:53:28] 2025-10-13 05:52:58,130 | INFO     | will attempt to kill all subprocesses of pid=19286
[2025-10-13 01:53:28] 2025-10-13 05:52:58,217 | INFO     | process IDs to be killed: [19286] (in reverse order)
[2025-10-13 01:53:28] 2025-10-13 05:52:58,268 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:53:28] 2025-10-13 05:52:58,268 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:53:28] 2025-10-13 05:52:58,272 | INFO     | did not find any defunct processes belonging to 19286
[2025-10-13 01:53:28] 2025-10-13 05:52:58,274 | INFO     | did not find any defunct processes belonging to 19286
[2025-10-13 01:53:28] 2025-10-13 05:52:58,275 | INFO     | ready for new job
[2025-10-13 01:53:28] 2025-10-13 05:52:58,275 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:53:28] 2025-10-13 05:52:58,276 | INFO     | ***************************************
[2025-10-13 01:53:28] 2025-10-13 05:52:58,276 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:53:28] 2025-10-13 05:52:58,276 | INFO     | ***************************************
[2025-10-13 01:53:28] 2025-10-13 05:52:58,276 | INFO     | 
[2025-10-13 01:53:28] 2025-10-13 05:52:58,276 | INFO     | architecture information:
[2025-10-13 01:53:28] 2025-10-13 05:52:58,277 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:53:28] 2025-10-13 05:52:58,291 | INFO     | cat /etc/os-release:
[2025-10-13 01:53:28] NAME="CentOS Linux"
[2025-10-13 01:53:28] VERSION="7 (Core)"
[2025-10-13 01:53:28] ID="centos"
[2025-10-13 01:53:28] ID_LIKE="rhel fedora"
[2025-10-13 01:53:28] VERSION_ID="7"
[2025-10-13 01:53:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:53:28] ANSI_COLOR="0;31"
[2025-10-13 01:53:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:53:28] HOME_URL="https://www.centos.org/"
[2025-10-13 01:53:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:53:28] 
[2025-10-13 01:53:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:53:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:53:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:53:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:53:28] 
[2025-10-13 01:53:28] 2025-10-13 05:52:58,292 | INFO     | ***************************************
[2025-10-13 01:53:28] 2025-10-13 05:52:58,794 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 01:53:28] 2025-10-13 05:52:58,811 | INFO     | sufficient remaining disk space (18706595840 B)
[2025-10-13 01:53:28] 2025-10-13 05:52:58,811 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:53:28] 2025-10-13 05:52:58,811 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:53:28] 2025-10-13 05:52:58,812 | INFO     | update_server=False
[2025-10-13 01:53:28] 2025-10-13 05:52:58,812 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:53:28] 2025-10-13 05:52:58,812 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:53:28] 2025-10-13 05:52:58,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:53:28] 2025-10-13 05:52:58,813 | INFO     | aborting loop
[2025-10-13 01:53:28] 2025-10-13 05:52:59,160 | INFO     | all data control threads have been joined
[2025-10-13 01:53:28] 2025-10-13 05:52:59,308 | INFO     | all payload control threads have been joined
[2025-10-13 01:53:28] 2025-10-13 05:52:59,817 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:52:59,818 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:00,017 | INFO     | all job control threads have been joined
[2025-10-13 01:53:28] 2025-10-13 05:53:00,149 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:00,161 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:00,165 | INFO     | [data] control thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:00,313 | INFO     | [payload] control thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:00,405 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:00,589 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:00,601 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:00,818 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:01,023 | INFO     | [job] control thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:01,138 | INFO     | [job] validate thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:01,371 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:01,740 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:53:28] 2025-10-13 05:53:01,806 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:53:28] 2025-10-13 05:53:02,745 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:05,812 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:09,000 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:53:28] 2025-10-13 05:53:10,005 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:53:28] 2025-10-13 05:53:20,896 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:53:28] 2025-10-13 05:53:22,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140687382804288)>', '<ExcThread(monitor, started 140686217180928)>']
[2025-10-13 01:53:28] 2025-10-13 05:53:27,396 | INFO     | all workflow threads have been joined
[2025-10-13 01:53:28] 2025-10-13 05:53:27,396 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:53:28] 2025-10-13 05:53:27,397 | INFO     | traces error code: 0
[2025-10-13 01:53:28] 2025-10-13 05:53:27,397 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:53:28] 2025-10-13 05:53:28,337 | INFO     | PID=12747 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:53:28] 2025-10-13 05:53:28,338 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:53:28] 2025-10-13 05:53:28,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:53:28] 2025-10-13 05:53:28,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:53:28] 2025-10-13 05:53:28,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:53:28] 2025-10-13 05:53:28,338 | INFO     | [monitor] control thread has ended
[2025-10-13 01:53:28] 2025-10-13 05:53:28,417 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:53:28] 2025-10-13 05:53:28,420 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:53:28] 2025-10-13 05:53:28,424 [wrapper] pilotpid: 12747
[2025-10-13 01:53:28] 2025-10-13 05:53:28,428 [wrapper] Pilot exit status: 0
[2025-10-13 01:53:28] 2025-10-13 05:53:28,443 [wrapper] pandaids: 6840970465
[2025-10-13 01:53:28] 2025-10-13 05:53:28,482 [wrapper] cleanup supervisor_pilot 16535 12748
[2025-10-13 01:53:28] 2025-10-13 05:53:28,485 [wrapper] Test setup, not cleaning
[2025-10-13 01:53:28] 2025-10-13 05:53:28,488 [wrapper] apfmon messages muted
[2025-10-13 01:53:28] 2025-10-13 05:53:28,492 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:53:28] 2025-10-13 05:53:28,496 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:53:28]  *** Error codes and diagnostics ***
[2025-10-13 01:53:28]     "exeErrorCode": 0,
[2025-10-13 01:53:28]     "exeErrorDiag": "",
[2025-10-13 01:53:28]     "pilotErrorCode": 0,
[2025-10-13 01:53:28]     "pilotErrorDiag": "",
[2025-10-13 01:53:28]  *** Listing of results directory ***
[2025-10-13 01:53:28] total 411628
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:02 pilot3.tar.gz
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 20:06 queuedata.json
[2025-10-13 01:53:28] -rwx------ 1 boincer umatlas     36292 Oct 12 20:09 runpilot2-wrapper.sh
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas       100 Oct 13 00:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:53:28] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 00:44 run_atlas
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas       105 Oct 13 00:44 job.xml
[2025-10-13 01:53:28] -rw-r--r-- 2 boincer umatlas 218298937 Oct 13 00:44 EVNT.46676267._004681.pool.root.1
[2025-10-13 01:53:28] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 00:44 start_atlas.sh
[2025-10-13 01:53:28] drwxrwx--x 2 boincer umatlas      4096 Oct 13 00:44 shared
[2025-10-13 01:53:28] -rw-r--r-- 2 boincer umatlas    569682 Oct 13 00:44 input.tar.gz
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas         0 Oct 13 00:44 boinc_lockfile
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 00:45 pandaJob.out
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas    974365 Oct 13 00:45 agis_schedconf.cvmfs.json
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas   1560580 Oct 13 00:45 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:53:28] drwx------ 5 boincer umatlas      4096 Oct 13 00:45 pilot3
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 01:46 init_data.xml
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas 197369570 Oct 13 01:52 HITS.46676269._092802.pool.root.1
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas       529 Oct 13 01:52 boinc_task_state.xml
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas      1049 Oct 13 01:52 memory_monitor_summary.json
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas    374686 Oct 13 01:52 log.46676269._092802.job.log.tgz.1
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas      7854 Oct 13 01:52 heartbeat.json
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 01:53 boinc_mmap_file
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas        27 Oct 13 01:53 wrapper_checkpoint.txt
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas       745 Oct 13 01:53 pilotlog.txt
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas        95 Oct 13 01:53 pilot_heartbeat.json
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas    596508 Oct 13 01:53 log.46676269._092802.job.log.1
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas       357 Oct 13 01:53 output.list
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas       620 Oct 13 01:53 runtime_log
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas    993280 Oct 13 01:53 result.tar.gz
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 01:53 runtime_log.err
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas       659 Oct 13 01:53 A9iNDm2ILS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm9KVMDmUTqIEm.diag
[2025-10-13 01:53:28] -rw-r--r-- 1 boincer umatlas     21855 Oct 13 01:53 stderr.txt
[2025-10-13 01:53:28] HITS file was successfully produced:
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas 197369570 Oct 13 01:52 shared/HITS.pool.root.1
[2025-10-13 01:53:28]  *** Contents of shared directory: ***
[2025-10-13 01:53:28] total 407480
[2025-10-13 01:53:28] -rw-r--r-- 2 boincer umatlas 218298937 Oct 13 00:44 ATLAS.root_0
[2025-10-13 01:53:28] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 00:44 start_atlas.sh
[2025-10-13 01:53:28] -rw-r--r-- 2 boincer umatlas    569682 Oct 13 00:44 input.tar.gz
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas 197369570 Oct 13 01:52 HITS.pool.root.1
[2025-10-13 01:53:28] -rw------- 1 boincer umatlas    993280 Oct 13 01:53 result.tar.gz
01:53:30 (8894): run_atlas exited; CPU time 42982.369316
01:53:30 (8894): called boinc_finish(0)

</stderr_txt>
]]>

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