Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 08:01:41 (52084): vboxwrapper version 26210
2025-10-13 08:01:41 (52084): BOINC client version: 8.2.4
2025-10-13 08:01:42 (52084): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-13 08:01:42 (52084): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 08:01:42 (52084): Create VM. (boinc_42cb0b900a2fbcec, slot#1)
2025-10-13 08:01:43 (52084): Setting Memory Size for VM. (4800MB)
2025-10-13 08:01:43 (52084): Setting CPU Count for VM. (8)
2025-10-13 08:01:43 (52084): Setting Chipset Options for VM.
2025-10-13 08:01:43 (52084): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 08:01:44 (52084): Setting Boot Options for VM.
2025-10-13 08:01:44 (52084): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 08:01:44 (52084): Enabling VM Network Access.
2025-10-13 08:01:45 (52084): Disabling USB Support for VM.
2025-10-13 08:01:45 (52084): Disabling COM Port Support for VM.
2025-10-13 08:01:45 (52084): Disabling LPT Port Support for VM.
2025-10-13 08:01:46 (52084): Disabling Audio Support for VM.
2025-10-13 08:01:46 (52084): Disabling Clipboard Support for VM.
2025-10-13 08:01:46 (52084): Disabling Drag and Drop Support for VM.
2025-10-13 08:01:46 (52084): Adding storage controller(s) to VM.
2025-10-13 08:01:47 (52084): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 08:01:49 (52084): Adding VirtualBox Guest Additions to VM.
2025-10-13 08:01:49 (52084): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 08:01:49 (52084): forwarding host port 59488 to guest port 80
2025-10-13 08:01:49 (52084): Enabling remote desktop for VM.
2025-10-13 08:01:50 (52084): Required extension pack not installed, remote desktop not enabled.
2025-10-13 08:01:50 (52084): Enabling shared directory for VM.
2025-10-13 08:01:50 (52084): Starting VM using VBoxManage interface. (boinc_42cb0b900a2fbcec, slot#1)
2025-10-13 08:01:55 (52084): Successfully started VM. (PID = '18012')
2025-10-13 08:01:55 (52084): Reporting VM Process ID to BOINC.
2025-10-13 08:01:55 (52084): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-13 08:01:55 (52084): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 08:01:55 (52084): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 08:01:55 (52084): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 08:01:55 (52084): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 08:01:56 (52084): Detected: Web Application Enabled (http://localhost:59488)
2025-10-13 08:01:56 (52084): Preference change detected
2025-10-13 08:01:56 (52084): Setting CPU throttle for VM. (80%)
2025-10-13 08:01:56 (52084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 08:01:58 (52084): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 08:01:58 (52084): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 08:02:01 (52084): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 08:02:01 (52084): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 08:02:01 (52084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 08:02:05 (52084): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 08:02:05 (52084): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 08:02:09 (52084): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 08:02:09 (52084): Guest Log: 00:00:00.000103 main     Log opened 2025-10-13T08:02:06.930576000Z
2025-10-13 08:02:09 (52084): Guest Log: 00:00:00.000171 main     OS Product: Linux
2025-10-13 08:02:09 (52084): Guest Log: 00:00:00.000227 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 08:02:09 (52084): Guest Log: 00:00:00.000251 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 08:02:09 (52084): Guest Log: 00:00:00.000275 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 08:02:09 (52084): Guest Log: 00:00:00.000276 main     Process ID: 1368
2025-10-13 08:02:09 (52084): Guest Log: 00:00:00.000277 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 08:02:09 (52084): Guest Log: 00:00:00.000722 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 08:02:09 (52084): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 08:02:09 (52084): Guest Log: [INFO] Mounting shared directory
2025-10-13 08:02:09 (52084): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 08:02:12 (52084): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 08:02:12 (52084): Guest Log: [INFO] Detected branch: prod
2025-10-13 08:02:12 (52084): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 08:02:12 (52084): Guest Log: Copying input files
2025-10-13 08:02:13 (52084): Guest Log: Copied input files into RunAtlas.
2025-10-13 08:02:13 (52084): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 08:02:13 (52084): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 08:02:13 (52084): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 08:02:13 (52084): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 08:02:19 (52084): Guest Log: 00:00:10.099367 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 634 281 000ns (GuestNow=1 760 360 538 566 547 000 ns GuestLast=1 760 342 526 932 266 000 ns fSetTimeLastLoop=true )
2025-10-13 08:02:21 (52084): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 08:02:21 (52084): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 08:02:21 (52084): Guest Log: 2.6.3.0 1646 0 32192 151661 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 08:02:22 (52084): Guest Log: copied the webapp to /var/www
2025-10-13 08:02:22 (52084): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-13 08:02:22 (52084): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-13 08:02:22 (52084): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 08:02:22 (52084): Guest Log:  *** Starting ATLAS job. (PandaID=6840750747 taskID=46676269) ***
2025-10-13 09:03:01 (52084): Guest Log:  *** Job finished ***
2025-10-13 09:03:01 (52084): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:02:40,292 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:02:49,634 [wrapper] supervise_pilot (15 min periods counter: 5)
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:02:53,465 | INFO     | [monitor] cgroup control has ended
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:02:54,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139697824122688)>', '<ExcThread(monitor, started 139696562763520)>']
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:02:55,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:02:55,542 | INFO     | [monitor] control thread has ended
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:02:59,998 | INFO     | all workflow threads have been joined
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:02:59,999 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:02:59,999 | INFO     | traces error code: 0
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:02:59,999 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:03:00,054 [wrapper] ==== pilot stdout END ====
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:03:00,058 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:03:00,062 [wrapper] pilotpid: 6060
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:03:00,065 [wrapper] Pilot exit status: 0
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:03:00,107 [wrapper] pandaids: 6840750747
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:03:00,130 [wrapper] cleanup supervisor_pilot 24821 6061
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:03:00,133 [wrapper] Test setup, not cleaning
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:03:00,136 [wrapper] apfmon messages muted
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:03:00,140 [wrapper] ==== wrapper stdout END ====
2025-10-13 09:03:01 (52084): Guest Log: 2025-10-13 14:03:00,144 [wrapper] ==== wrapper stderr END ====
2025-10-13 09:03:01 (52084): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 09:03:01 (52084): Guest Log:     "exeErrorCode": 0,
2025-10-13 09:03:01 (52084): Guest Log:     "exeErrorDiag": "",
2025-10-13 09:03:01 (52084): Guest Log:     "pilotErrorCode": 0,
2025-10-13 09:03:01 (52084): Guest Log:     "pilotErrorDiag": "",
2025-10-13 09:03:01 (52084): Guest Log:  *** Listing of results directory ***
2025-10-13 09:03:01 (52084): Guest Log: total 196596
2025-10-13 09:03:01 (52084): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 21:12 pilot3.tar.gz
2025-10-13 09:03:01 (52084): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 21:29 runpilot2-wrapper.sh
2025-10-13 09:03:01 (52084): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 21:29 queuedata.json
2025-10-13 09:03:01 (52084): Guest Log: -rwxr-xr-x. 1 atlas atlas      8710 Oct 13 13:02 init_data.xml
2025-10-13 09:03:01 (52084): Guest Log: -rwxr-xr-x. 1 atlas atlas    569679 Oct 13 13:02 input.tar.gz
2025-10-13 09:03:01 (52084): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 13:02 start_atlas.sh
2025-10-13 09:03:01 (52084): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 13:02 EVNT.46676267._004831.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 09:03:01 (52084): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 13 13:02 pandaJob.out
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas    972497 Oct 13 13:02 agis_schedconf.cvmfs.json
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 13:02 agis_ddmendpoints.agis.ALL.json
2025-10-13 09:03:01 (52084): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 13:02 pilot3
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas 195839508 Oct 13 14:01 HITS.46676269._089966.pool.root.1
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas      1030 Oct 13 14:01 memory_monitor_summary.json
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas    316656 Oct 13 14:01 log.46676269._089966.job.log.tgz.1
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas      7826 Oct 13 14:02 heartbeat.json
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 14:02 pilot_heartbeat.json
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 13 14:02 pilotlog.txt
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas    507442 Oct 13 14:03 log.46676269._089966.job.log.1
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 14:03 output.list
2025-10-13 09:03:01 (52084): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 14:03 runtime_log
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas    839680 Oct 13 14:03 result.tar.gz
2025-10-13 09:03:01 (52084): Guest Log: -rw-r--r--. 1 atlas atlas      8672 Oct 13 14:03 runtime_log.err
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas       664 Oct 13 14:03 3I1MDmeoIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUglNDmPrYBKo.diag
2025-10-13 09:03:01 (52084): Guest Log: Looking for outputfile HITS.46676269._089966.pool.root.1
2025-10-13 09:03:01 (52084): Guest Log: HITS file was successfully produced
2025-10-13 09:03:01 (52084): Guest Log: -rw-------. 1 atlas atlas 195839508 Oct 13 14:01 /home/atlas/RunAtlas/HITS.46676269._089966.pool.root.1
2025-10-13 09:03:02 (52084): Guest Log: Successfully finished the ATLAS job!
2025-10-13 09:03:02 (52084): Guest Log: Copying the results back to the shared directory!
2025-10-13 09:03:02 (52084): Guest Log:  *** Contents of shared directory: ***
2025-10-13 09:03:02 (52084): Guest Log: total 407612
2025-10-13 09:03:02 (52084): Guest Log: -rwxrwxrwx. 1 root root 220109318 Oct 13 13:01 ATLAS.root_0
2025-10-13 09:03:02 (52084): Guest Log: -rwxrwxrwx. 1 root root 195839508 Oct 13 14:03 HITS.pool.root.1
2025-10-13 09:03:02 (52084): Guest Log: -rwxrwxrwx. 1 root root      8710 Oct 13 13:01 init_data.xml
2025-10-13 09:03:02 (52084): Guest Log: -rwxrwxrwx. 1 root root    569679 Oct 13 04:50 input.tar.gz
2025-10-13 09:03:02 (52084): Guest Log: -rwxrwxrwx. 1 root root    839680 Oct 13 14:03 result.tar.gz
2025-10-13 09:03:02 (52084): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 13 04:50 start_atlas.sh
2025-10-13 09:03:02 (52084): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 09:03:02 (52084): VM Completion File Detected.
2025-10-13 09:03:02 (52084): Powering off VM.
2025-10-13 09:03:03 (52084): Successfully stopped VM.
2025-10-13 09:03:03 (52084): Deregistering VM. (boinc_42cb0b900a2fbcec, slot#1)
2025-10-13 09:03:03 (52084): Removing network bandwidth throttle group from VM.
2025-10-13 09:03:03 (52084): Removing VM from VirtualBox.
2025-10-13 09:03:08 (52084): called boinc_finish(0)

</stderr_txt>
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