Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
02:34:51 (632802): wrapper (7.7.26015): starting
02:34:51 (632802): wrapper: running run_atlas (--nthreads 4)
[2025-10-14 02:34:51] Arguments: --nthreads 4
[2025-10-14 02:34:51] Threads: 4
[2025-10-14 02:34:51] Checking for CVMFS
[2025-10-14 02:34:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 02:34:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 02:34:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 02:34:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 02:34:51] 2.12.7.0 3347374 8244 65204 151678 1 57 3761031 6144001 0 130560 3 16151523 99.996 282571 391 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2025-10-14 02:34:51] CVMFS is ok
[2025-10-14 02:34:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 02:34:51] Checking for apptainer binary...
[2025-10-14 02:34:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 02:34:51] Running /usr/bin/apptainer --version
[2025-10-14 02:34:51] apptainer version 1.4.2
[2025-10-14 02:34:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 02:34:51] Ryzen8
[2025-10-14 02:34:51] apptainer works
[2025-10-14 02:34:51] Set ATHENA_PROC_NUMBER=4
[2025-10-14 02:34:51] Set ATHENA_CORE_NUMBER=4
[2025-10-14 02:34:51] Starting ATLAS job with PandaID=6840970184
[2025-10-14 02:34:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 03:54:29]  *** The last 200 lines of the pilot log: ***
[2025-10-14 03:54:29] 2025-10-14 01:53:31,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:31,937 | INFO     | time since job start (4715s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:33,877 | INFO     | monitor loop #362: job 0:6840970184 is in state 'finished'
[2025-10-14 03:54:29] 2025-10-14 01:53:33,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:33,940 | INFO     | time since job start (4717s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:35,944 | INFO     | time since job start (4719s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:36,380 | INFO     | monitor loop #363: job 0:6840970184 is in state 'finished'
[2025-10-14 03:54:29] 2025-10-14 01:53:36,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:37,947 | INFO     | time since job start (4721s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:38,883 | INFO     | monitor loop #364: job 0:6840970184 is in state 'finished'
[2025-10-14 03:54:29] 2025-10-14 01:53:38,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:39,950 | INFO     | time since job start (4723s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:41,386 | INFO     | monitor loop #365: job 0:6840970184 is in state 'finished'
[2025-10-14 03:54:29] 2025-10-14 01:53:41,386 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:41,954 | INFO     | time since job start (4725s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:43,889 | INFO     | monitor loop #366: job 0:6840970184 is in state 'finished'
[2025-10-14 03:54:29] 2025-10-14 01:53:43,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:43,957 | INFO     | time since job start (4727s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:45,008 | INFO     | PID=636515 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 03:54:29] 2025-10-14 01:53:46,009 | INFO     | time since job start (4730s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:46,393 | INFO     | monitor loop #367: job 0:6840970184 is in state 'finished'
[2025-10-14 03:54:29] 2025-10-14 01:53:46,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:48,014 | INFO     | time since job start (4732s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:48,896 | INFO     | monitor loop #368: job 0:6840970184 is in state 'finished'
[2025-10-14 03:54:29] 2025-10-14 01:53:48,896 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:50,017 | INFO     | time since job start (4734s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:51,399 | INFO     | monitor loop #369: job 0:6840970184 is in state 'finished'
[2025-10-14 03:54:29] 2025-10-14 01:53:51,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:52,020 | INFO     | time since job start (4736s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:53,902 | INFO     | monitor loop #370: job 0:6840970184 is in state 'finished'
[2025-10-14 03:54:29] 2025-10-14 01:53:53,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:54,024 | INFO     | time since job start (4738s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:56,027 | INFO     | time since job start (4740s) is within the limit (172800.0s)
[2025-10-14 03:54:29] 2025-10-14 01:53:56,406 | INFO     | monitor loop #371: job 0:6840970184 is in state 'finished'
[2025-10-14 03:54:29] 2025-10-14 01:53:56,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 03:54:29] 2025-10-14 01:53:57,228 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-14 03:54:29] 2025-10-14 01:53:57,229 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4339.591583333333
[2025-10-14 03:54:29] 2025-10-14 01:53:57,230 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840970184/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 03:54:29] 2025-10-14 01:53:57,231 | INFO     | extracted standard info from prmon json
[2025-10-14 03:54:29] 2025-10-14 01:53:57,231 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 03:54:29] 2025-10-14 01:53:57,231 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 03:54:29] 2025-10-14 01:53:57,231 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 03:54:29] 2025-10-14 01:53:57,231 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 03:54:29] 2025-10-14 01:53:57,232 | INFO     | fitting pss+swap vs Time
[2025-10-14 03:54:29] 2025-10-14 01:53:57,232 | INFO     | sum of square deviations: 106336877.5
[2025-10-14 03:54:29] 2025-10-14 01:53:57,232 | INFO     | sum of deviations: -14096604893.5
[2025-10-14 03:54:29] 2025-10-14 01:53:57,232 | INFO     | mean x: 1760404524.5
[2025-10-14 03:54:29] 2025-10-14 01:53:57,232 | INFO     | mean y: 2563353.1
[2025-10-14 03:54:29] 2025-10-14 01:53:57,232 | INFO     | -- intersect: 233371528269.39862
[2025-10-14 03:54:29] 2025-10-14 01:53:57,232 | INFO     | intersect: 233371528269.39862
[2025-10-14 03:54:29] 2025-10-14 01:53:57,232 | INFO     | chi2: 0.08139717703444584
[2025-10-14 03:54:29] 2025-10-14 01:53:57,232 | INFO     | -- intersect: 233371528269.39862
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | current memory leak: -132.57 B/s (using 70 data points, chi2=0.08)
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | could have reported an average CPU frequency of 4336 MHz (6 samples)
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | ..............................
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | . Timing measurements:
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | . get job = 0 s
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | . initial setup = 0 s
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | . payload setup = 2 s
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | . stage-in = 0 s
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | . payload execution = 4670 s
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | . stage-out = 0 s
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | . log creation = 0 s
[2025-10-14 03:54:29] 2025-10-14 01:53:57,233 | INFO     | ..............................
[2025-10-14 03:54:29] 2025-10-14 01:53:57,275 | INFO     | 
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | job summary report
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | --------------------------------------------------
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | PanDA job id: 6840970184
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | task id: 46676269
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | errors: (none)
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | pilot state: finished 
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | transexitcode: 0
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | exeerrorcode: 0
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | exeerrordiag: 
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | exitcode: 0
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | exitmsg: OK
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | cpuconsumptiontime: 18198 s
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | nevents: 400
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | neventsw: 0
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | pid: 642948
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | pgrp: 642948
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | corecount: 4
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | event service: False
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 4676: 2375443, 4677: 2384441, 4680: 2384497, 4727: 2384819}
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | --------------------------------------------------
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | 
[2025-10-14 03:54:29] 2025-10-14 01:53:57,276 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,290 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 03:54:29] 2025-10-14 01:53:57,290 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,290 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 03:54:29] 2025-10-14 01:53:57,290 | INFO     | job 6840970184 has completed (purged errors)
[2025-10-14 03:54:29] 2025-10-14 01:53:57,290 | INFO     | overall cleanup function is called
[2025-10-14 03:54:29] 2025-10-14 01:53:58,294 | INFO     | --- collectZombieJob: --- 10, [642948]
[2025-10-14 03:54:29] 2025-10-14 01:53:58,294 | INFO     | zombie collector waiting for pid 642948
[2025-10-14 03:54:29] 2025-10-14 01:53:58,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 03:54:29] 2025-10-14 01:53:58,294 | INFO     | collected zombie processes
[2025-10-14 03:54:29] 2025-10-14 01:53:58,294 | INFO     | will attempt to kill all subprocesses of pid=642948
[2025-10-14 03:54:29] 2025-10-14 01:53:58,334 | INFO     | process IDs to be killed: [642948] (in reverse order)
[2025-10-14 03:54:29] 2025-10-14 01:53:58,360 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 03:54:29] 2025-10-14 01:53:58,361 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 03:54:29] 2025-10-14 01:53:58,362 | INFO     | did not find any defunct processes belonging to 642948
[2025-10-14 03:54:29] 2025-10-14 01:53:58,363 | INFO     | did not find any defunct processes belonging to 642948
[2025-10-14 03:54:29] 2025-10-14 01:53:58,363 | INFO     | ready for new job
[2025-10-14 03:54:29] 2025-10-14 01:53:58,363 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 03:54:29] 2025-10-14 01:53:58,364 | INFO     | ***************************************
[2025-10-14 03:54:29] 2025-10-14 01:53:58,364 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 03:54:29] 2025-10-14 01:53:58,364 | INFO     | ***************************************
[2025-10-14 03:54:29] 2025-10-14 01:53:58,364 | INFO     | 
[2025-10-14 03:54:29] 2025-10-14 01:53:58,364 | INFO     | architecture information:
[2025-10-14 03:54:29] 2025-10-14 01:53:58,365 | INFO     | executing command: cat /etc/os-release
[2025-10-14 03:54:29] 2025-10-14 01:53:58,371 | INFO     | cat /etc/os-release:
[2025-10-14 03:54:29] NAME="CentOS Linux"
[2025-10-14 03:54:29] VERSION="7 (Core)"
[2025-10-14 03:54:29] ID="centos"
[2025-10-14 03:54:29] ID_LIKE="rhel fedora"
[2025-10-14 03:54:29] VERSION_ID="7"
[2025-10-14 03:54:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 03:54:29] ANSI_COLOR="0;31"
[2025-10-14 03:54:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 03:54:29] HOME_URL="https://www.centos.org/"
[2025-10-14 03:54:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 03:54:29] 
[2025-10-14 03:54:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 03:54:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 03:54:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 03:54:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 03:54:29] 
[2025-10-14 03:54:29] 2025-10-14 01:53:58,371 | INFO     | ***************************************
[2025-10-14 03:54:29] 2025-10-14 01:53:58,874 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-14 03:54:29] 2025-10-14 01:53:58,887 | INFO     | sufficient remaining disk space (101445533696 B)
[2025-10-14 03:54:29] 2025-10-14 01:53:58,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 03:54:29] 2025-10-14 01:53:58,887 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 03:54:29] 2025-10-14 01:53:58,887 | INFO     | update_server=False
[2025-10-14 03:54:29] 2025-10-14 01:53:58,888 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 03:54:29] 2025-10-14 01:53:58,888 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 03:54:29] 2025-10-14 01:53:58,907 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-14 03:54:29] 2025-10-14 01:53:58,907 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-14 03:54:29] 2025-10-14 01:53:58,907 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 03:54:29] 2025-10-14 01:53:58,907 | INFO     | will abort loop
[2025-10-14 03:54:29] 2025-10-14 01:53:58,950 | INFO     | all payload control threads have been joined
[2025-10-14 03:54:29] 2025-10-14 01:53:59,364 | INFO     | all job control threads have been joined
[2025-10-14 03:54:29] 2025-10-14 01:53:59,580 | INFO     | all data control threads have been joined
[2025-10-14 03:54:29] 2025-10-14 01:53:59,807 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 03:54:29] 2025-10-14 01:53:59,890 | INFO     | [job] retrieve thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:53:59,891 | INFO     | [job] queue monitor thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:53:59,910 | INFO     | [job] job monitor thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:53:59,954 | INFO     | [payload] control thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:00,140 | INFO     | [payload] validate_post thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:00,284 | INFO     | [payload] failed_post thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:00,369 | INFO     | [job] control thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:00,474 | INFO     | [job] validate thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:00,574 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:00,584 | INFO     | [data] control thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:00,610 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:01,194 | INFO     | [data] copytool_in thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:01,266 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 03:54:29] 2025-10-14 01:54:01,297 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:01,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:01,812 | INFO     | [data] copytool_out thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:04,200 | INFO     | [monitor] cgroup control has ended
[2025-10-14 03:54:29] 2025-10-14 01:54:05,270 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 03:54:29] 2025-10-14 01:54:07,314 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139730315253568)>', '<ExcThread(monitor, started 139729806796544)>']
[2025-10-14 03:54:29] 2025-10-14 01:54:12,337 | INFO     | all workflow threads have been joined
[2025-10-14 03:54:29] 2025-10-14 01:54:12,337 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 03:54:29] 2025-10-14 01:54:12,337 | INFO     | traces error code: 0
[2025-10-14 03:54:29] 2025-10-14 01:54:12,337 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 03:54:29] 2025-10-14 01:54:29,105 | INFO     | PID=636515 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 03:54:29] 2025-10-14 01:54:29,105 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 03:54:29] 2025-10-14 01:54:29,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 03:54:29] 2025-10-14 01:54:29,106 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 03:54:29] 2025-10-14 01:54:29,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 03:54:29] 2025-10-14 01:54:29,106 | INFO     | [monitor] control thread has ended
[2025-10-14 03:54:29] 2025-10-14 01:54:29,192 [wrapper] ==== pilot stdout END ====
[2025-10-14 03:54:29] 2025-10-14 01:54:29,193 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 03:54:29] 2025-10-14 01:54:29,195 [wrapper] pilotpid: 636515
[2025-10-14 03:54:29] 2025-10-14 01:54:29,196 [wrapper] Pilot exit status: 0
[2025-10-14 03:54:29] 2025-10-14 01:54:29,201 [wrapper] pandaids: 6840970184
[2025-10-14 03:54:29] 2025-10-14 01:54:29,218 [wrapper] cleanup supervisor_pilot  654575 636516
[2025-10-14 03:54:29] 2025-10-14 01:54:29,219 [wrapper] Test setup, not cleaning
[2025-10-14 03:54:29] 2025-10-14 01:54:29,220 [wrapper] apfmon messages muted
[2025-10-14 03:54:29] 2025-10-14 01:54:29,222 [wrapper] ==== wrapper stdout END ====
[2025-10-14 03:54:29] 2025-10-14 01:54:29,223 [wrapper] ==== wrapper stderr END ====
[2025-10-14 03:54:29]  *** Error codes and diagnostics ***
[2025-10-14 03:54:29]     "exeErrorCode": 0,
[2025-10-14 03:54:29]     "exeErrorDiag": "",
[2025-10-14 03:54:29]     "pilotErrorCode": 0,
[2025-10-14 03:54:29]     "pilotErrorDiag": "",
[2025-10-14 03:54:29]  *** Listing of results directory ***
[2025-10-14 03:54:29] insgesamt 412904
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc    557409 13. Okt 01:51 pilot3.tar.gz
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc      5112 13. Okt 01:57 queuedata.json
[2025-10-14 03:54:29] -rwx------ 1 boinc boinc     36292 13. Okt 01:59 runpilot2-wrapper.sh
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc       100 14. Okt 02:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 03:54:29] -rwxr-xr-x 1 boinc boinc      7986 14. Okt 02:34 run_atlas
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc       105 14. Okt 02:34 job.xml
[2025-10-14 03:54:29] -rw-r--r-- 2 boinc boinc     15120 14. Okt 02:34 start_atlas.sh
[2025-10-14 03:54:29] drwxrwx--x 2 boinc boinc      4096 14. Okt 02:34 shared
[2025-10-14 03:54:29] -rw-r--r-- 2 boinc boinc    569683 14. Okt 02:34 input.tar.gz
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc      9623 14. Okt 02:34 init_data.xml
[2025-10-14 03:54:29] -rw-r--r-- 2 boinc boinc 220686994 14. Okt 02:34 EVNT.46676267._004673.pool.root.1
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc         0 14. Okt 02:34 boinc_lockfile
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc      2550 14. Okt 02:34 pandaJob.out
[2025-10-14 03:54:29] -rw------- 1 boinc boinc    972807 14. Okt 02:34 agis_schedconf.cvmfs.json
[2025-10-14 03:54:29] -rw------- 1 boinc boinc   1560580 14. Okt 02:34 agis_ddmendpoints.agis.ALL.json
[2025-10-14 03:54:29] drwx------ 5 boinc boinc      4096 14. Okt 02:34 pilot3
[2025-10-14 03:54:29] -rw------- 1 boinc boinc 196316605 14. Okt 03:52 HITS.46676269._092604.pool.root.1
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc       529 14. Okt 03:52 boinc_task_state.xml
[2025-10-14 03:54:29] -rw------- 1 boinc boinc      1030 14. Okt 03:53 memory_monitor_summary.json
[2025-10-14 03:54:29] -rw------- 1 boinc boinc    261315 14. Okt 03:53 log.46676269._092604.job.log.tgz.1
[2025-10-14 03:54:29] -rw------- 1 boinc boinc      7762 14. Okt 03:53 heartbeat.json
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc      8192 14. Okt 03:54 boinc_mmap_file
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc        27 14. Okt 03:54 wrapper_checkpoint.txt
[2025-10-14 03:54:29] -rw------- 1 boinc boinc       746 14. Okt 03:54 pilotlog.txt
[2025-10-14 03:54:29] -rw------- 1 boinc boinc        95 14. Okt 03:54 pilot_heartbeat.json
[2025-10-14 03:54:29] -rw------- 1 boinc boinc    693007 14. Okt 03:54 log.46676269._092604.job.log.1
[2025-10-14 03:54:29] -rw------- 1 boinc boinc       357 14. Okt 03:54 output.list
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc       620 14. Okt 03:54 runtime_log
[2025-10-14 03:54:29] -rw------- 1 boinc boinc    972800 14. Okt 03:54 result.tar.gz
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc      8663 14. Okt 03:54 runtime_log.err
[2025-10-14 03:54:29] -rw------- 1 boinc boinc       640 14. Okt 03:54 mivLDm78KS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmi7lNDmQcXx9m.diag
[2025-10-14 03:54:29] -rw-r--r-- 1 boinc boinc     21988 14. Okt 03:54 stderr.txt
[2025-10-14 03:54:29] HITS file was successfully produced:
[2025-10-14 03:54:29] -rw------- 1 boinc boinc 196316605 14. Okt 03:52 shared/HITS.pool.root.1
[2025-10-14 03:54:29]  *** Contents of shared directory: ***
[2025-10-14 03:54:29] insgesamt 408768
[2025-10-14 03:54:29] -rw-r--r-- 2 boinc boinc     15120 14. Okt 02:34 start_atlas.sh
[2025-10-14 03:54:29] -rw-r--r-- 2 boinc boinc    569683 14. Okt 02:34 input.tar.gz
[2025-10-14 03:54:29] -rw-r--r-- 2 boinc boinc 220686994 14. Okt 02:34 ATLAS.root_0
[2025-10-14 03:54:29] -rw------- 1 boinc boinc 196316605 14. Okt 03:52 HITS.pool.root.1
[2025-10-14 03:54:29] -rw------- 1 boinc boinc    972800 14. Okt 03:54 result.tar.gz
03:54:30 (632802): run_atlas exited; CPU time 18220.290833
03:54:30 (632802): called boinc_finish(0)

</stderr_txt>
]]>

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